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The map label for this gene is yafV [H]

Identifier: 84623683

GI number: 84623683

Start: 2241358

End: 2242161

Strand: Direct

Name: yafV [H]

Synonym: XOO_2026

Alternate gene names: 84623683

Gene position: 2241358-2242161 (Clockwise)

Preceding gene: 84623682

Following gene: 84623686

Centisome position: 45.37

GC content: 64.05

Gene sequence:

>804_bases
ATGACCGACCTGCGCATCTCCCTGATTCAAGGCGACACCCGTTGGCATGATCCTGCCGGTAACCGTGCTTACTACGGTGG
GCTGCTGGAGCCGTTGGCCGGGCAGACCGATCTGGTGATTTTGCCGGAGACCTTTACCAGCGGGTTTTCCAACGATGCCA
TCGACAAGGCCGAGGGCATGGACGGGCCGACGGTGGAGTGGGTGCGTGCACACGCCGCACGGCTAGGCGCGGCGGTGACC
GGCAGCGTGCAATTGCGCACCGATGCCGGGGTGTTCAATCGGCTGCTGTGGGCCACGCCGGATGGAGCGCTGCAGTATTA
CGACAAGCGCCACCTGTTCCGCTTCGGCAACGAGCATCTGCGTTATGCGGCCGGGCGCGAGCGGCTGACGGTGGAATGGA
AGGGCTGGCGGATCAATCCGCAGGTCTGCTACGACTTGCGGTTTCCGGTGTTCTGCCGCAACCGCTTCGATGTGGAACGC
TCCGGGCAGCTGGATTTCGATCTGCAATTGTTCGTCGCCAACTGGCCGTCCGCCCGTGCCTATGCCTGGAAGACGCTGCT
GCGCGCCCGCGCGATCGAAAACCTGTGCTTCGTGGCGGCGGTCAACCGCATTGGCGTGGACGGCAACCAGCTGCATTACG
CCGGCGACAGTGCGGTGATCGATTTCCTCGGCCAGCCGCAGGTGGAAATCCGCGAACGCGACCAGGTGGTCACCACCACC
ATCAGCGCCACTGCACTGGCCGAACACCGCGCCCGCTTCCCGGCAATGCTCGATGCCGATCGGTTCGAGATTGGGGATTC
GTGA

Upstream 100 bases:

>100_bases
GGCGGTTGGTCGTTTGTTGACGAGTTTGCAGAGTGCCCGATGACAGAAAGCTGCCCGAGCCCCGCCCTTCGAATTCCCAC
TCCCGAATCCCGAGCCTTCA

Downstream 100 bases:

>100_bases
TTGGAGATGGGTACACCTGATTAGCACGCACTTTCAGCGGTGAACATGGTGACATCACGCAGGGCCCGCTCGGACCACGG
CTTGCTGGCGGCTGCGGCGG

Product: hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 267; Mature: 266

Protein sequence:

>267_residues
MTDLRISLIQGDTRWHDPAGNRAYYGGLLEPLAGQTDLVILPETFTSGFSNDAIDKAEGMDGPTVEWVRAHAARLGAAVT
GSVQLRTDAGVFNRLLWATPDGALQYYDKRHLFRFGNEHLRYAAGRERLTVEWKGWRINPQVCYDLRFPVFCRNRFDVER
SGQLDFDLQLFVANWPSARAYAWKTLLRARAIENLCFVAAVNRIGVDGNQLHYAGDSAVIDFLGQPQVEIRERDQVVTTT
ISATALAEHRARFPAMLDADRFEIGDS

Sequences:

>Translated_267_residues
MTDLRISLIQGDTRWHDPAGNRAYYGGLLEPLAGQTDLVILPETFTSGFSNDAIDKAEGMDGPTVEWVRAHAARLGAAVT
GSVQLRTDAGVFNRLLWATPDGALQYYDKRHLFRFGNEHLRYAAGRERLTVEWKGWRINPQVCYDLRFPVFCRNRFDVER
SGQLDFDLQLFVANWPSARAYAWKTLLRARAIENLCFVAAVNRIGVDGNQLHYAGDSAVIDFLGQPQVEIRERDQVVTTT
ISATALAEHRARFPAMLDADRFEIGDS
>Mature_266_residues
TDLRISLIQGDTRWHDPAGNRAYYGGLLEPLAGQTDLVILPETFTSGFSNDAIDKAEGMDGPTVEWVRAHAARLGAAVTG
SVQLRTDAGVFNRLLWATPDGALQYYDKRHLFRFGNEHLRYAAGRERLTVEWKGWRINPQVCYDLRFPVFCRNRFDVERS
GQLDFDLQLFVANWPSARAYAWKTLLRARAIENLCFVAAVNRIGVDGNQLHYAGDSAVIDFLGQPQVEIRERDQVVTTTI
SATALAEHRARFPAMLDADRFEIGDS

Specific function: Unknown

COG id: COG0388

COG function: function code R; Predicted amidohydrolase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CN hydrolase domain [H]

Homologues:

Organism=Escherichia coli, GI1786412, Length=269, Percent_Identity=45.3531598513011, Blast_Score=225, Evalue=2e-60,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003010
- InterPro:   IPR001110 [H]

Pfam domain/function: PF00795 CN_hydrolase [H]

EC number: 3.5.-.- [C]

Molecular weight: Translated: 30077; Mature: 29946

Theoretical pI: Translated: 6.25; Mature: 6.25

Prosite motif: PS50263 CN_HYDROLASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDLRISLIQGDTRWHDPAGNRAYYGGLLEPLAGQTDLVILPETFTSGFSNDAIDKAEGM
CCCEEEEEEECCCCCCCCCCCCEEECCCHHHCCCCCCEEEECCHHCCCCCCCCCHHHCCC
DGPTVEWVRAHAARLGAAVTGSVQLRTDAGVFNRLLWATPDGALQYYDKRHLFRFGNEHL
CCCHHHHHHHHHHHHCEEEECCEEEEECCHHHHHHEEECCCHHHHHHHHHHHHHHCCHHH
RYAAGRERLTVEWKGWRINPQVCYDLRFPVFCRNRFDVERSGQLDFDLQLFVANWPSARA
EEECCCCEEEEEECCEEECCEEEEEECCCEEECCCCCCCCCCCCCEEEEEEEECCCCCHH
YAWKTLLRARAIENLCFVAAVNRIGVDGNQLHYAGDSAVIDFLGQPQVEIRERDQVVTTT
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHCCCCCEEECCCCEEEEEE
ISATALAEHRARFPAMLDADRFEIGDS
HHHHHHHHHHHCCCCEECCCCCCCCCC
>Mature Secondary Structure 
TDLRISLIQGDTRWHDPAGNRAYYGGLLEPLAGQTDLVILPETFTSGFSNDAIDKAEGM
CCEEEEEEECCCCCCCCCCCCEEECCCHHHCCCCCCEEEECCHHCCCCCCCCCHHHCCC
DGPTVEWVRAHAARLGAAVTGSVQLRTDAGVFNRLLWATPDGALQYYDKRHLFRFGNEHL
CCCHHHHHHHHHHHHCEEEECCEEEEECCHHHHHHEEECCCHHHHHHHHHHHHHHCCHHH
RYAAGRERLTVEWKGWRINPQVCYDLRFPVFCRNRFDVERSGQLDFDLQLFVANWPSARA
EEECCCCEEEEEECCEEECCEEEEEECCCEEECCCCCCCCCCCCCEEEEEEEECCCCCHH
YAWKTLLRARAIENLCFVAAVNRIGVDGNQLHYAGDSAVIDFLGQPQVEIRERDQVVTTT
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHCCCCCEEECCCCEEEEEE
ISATALAEHRARFPAMLDADRFEIGDS
HHHHHHHHHHHCCCCEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]