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The map label for this gene is glcD [H]

Identifier: 84623670

GI number: 84623670

Start: 2228974

End: 2230392

Strand: Direct

Name: glcD [H]

Synonym: XOO_2013

Alternate gene names: 84623670

Gene position: 2228974-2230392 (Clockwise)

Preceding gene: 84623668

Following gene: 84623671

Centisome position: 45.12

GC content: 63.28

Gene sequence:

>1419_bases
ATGACCGATCCCCGCATCCTTTCGTTGCAACACGCCATGCCTGCGTTACGTTTGAAGACCGAGCCGGCCGACCTGGAGCA
TTACGGCCGCGACTGGACACGGCGCTGGACGCCGAATCCGCTCGCCATCGCCTTGCCCGGCTCGGTGGAGGAAGTGCAGG
CGGTCATGCGTTGGGCAAATGTGCAAGGCGTGGCGGTGGTGCCGTCGGGCGGGCGCACGGGATTATCGGGCGGCGCAGTG
GCGGCCAATGGCGAACTGGTGCTGAGCCTGGAACGCTTGAACAAGCCGCTCGACTTCAACGCGGTGGATCGCACGCTCAC
CGTGCAGGCCGGCATGCCGCTGGAAGCGGTGCATAACGCCGCGCGCGAGCATGGCTTGGTGTATCCGGTGGATTTTGCGG
CGCGGGGTTCGTGTTCGATCGGCGGCAATATCGCCACCAATGCCGGTGGCATCCGGGTGATCCGCTACGGCAATACGCGC
GAATGGGTGGCCGGCTTGAAGGTGGTTACCGGCGGCGGCGAGCTGCTCGAACTCAACAACGCGCTGGTGAAGAATTCCAG
CGGCTACGACTTCCGTCATTTGATGATTGGCTCCGAAGGCACGCTGGGCATCGTGGTCGAAGCCACGCTGCGGCTGACCG
ACCCGCCGCCGCCCAGCAACGTGATGTTGCTGGCGCTGCCTTCGTTCGAGGTGTTGATGCAGGTGTTCGCTGCGTTTCGC
GCGCAGCTGCGCCTGGAGGCCTTCGAATTCTTCACCGATCGCGCGCTGGAGCATGTGCTTGCGCATGGCGCGCAGGCGCC
GTTCGCCGAGGTTCACCCGTATTACGTGGTCACCGAATTCGCTGCAGGCGACGAGGTGCAGGAGGCGGCCGCGATGGCGG
CCTTCGAGACCTGCATTGAGCAGGACTGGGTCAGCGATGGCGTGATCAGCCAGAGCGACGCACAGGCCGCGCAACTGTGG
CGGCTACGCGAGGGCATCACCGAAGCGGTGGCACGTTATACGCCGTACAAGAACGATGTGTCGGTGCGCATTTCGGCGAT
GCCCGCATTTCTGGCCGAAACCCAGGCCTTGCTCAGCGAGGCGTATCCGCACTTCGATGTGGTGTGGTTCGGCCATATCG
GTGACGGCAATCTGCACATCAATGTGCTCAAACCCGATGACACCAGTCAGGCCGATTTCGTTGCGGCCTGCGATCAGGTG
ACCAAGTTGCTGGCGCAGGCCCTGCAGCGTTTCGACGGCAGTATCTCTGCCGAACACGGCATCGGTCTGGTCAAGAAGGC
CTACTTGTGGAGTACGCGCTCTGCCGAGGAAATCGCCTTGATGCGCGGCATCAAACATGTGCTCGATCCCCATCTTTTGC
TGAATCCCGGCAAGCTGTTCGAGATCGGCAAGGCGCCTGCTGCCACGCCCGCCGGTTAG

Upstream 100 bases:

>100_bases
TTCAGCTGAATCCAACGCTGCGTCGGCTGTGAGTGCGCCGGCTAGACGGGGCAGGCTGTCGCTGGCACGCTGTGCGGTCC
CTACTGCAGCGTCGCGTGCC

Downstream 100 bases:

>100_bases
TCTTTCAGCACCTTCACGCGGAATAGATCGGCCCATGATGCGCTCCCTCGTGTTTTTCGCTTTGCCACTGCTGCCGCTGG
CAGCAGTGGCATCCAGTGTG

Product: oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 472; Mature: 471

Protein sequence:

>472_residues
MTDPRILSLQHAMPALRLKTEPADLEHYGRDWTRRWTPNPLAIALPGSVEEVQAVMRWANVQGVAVVPSGGRTGLSGGAV
AANGELVLSLERLNKPLDFNAVDRTLTVQAGMPLEAVHNAAREHGLVYPVDFAARGSCSIGGNIATNAGGIRVIRYGNTR
EWVAGLKVVTGGGELLELNNALVKNSSGYDFRHLMIGSEGTLGIVVEATLRLTDPPPPSNVMLLALPSFEVLMQVFAAFR
AQLRLEAFEFFTDRALEHVLAHGAQAPFAEVHPYYVVTEFAAGDEVQEAAAMAAFETCIEQDWVSDGVISQSDAQAAQLW
RLREGITEAVARYTPYKNDVSVRISAMPAFLAETQALLSEAYPHFDVVWFGHIGDGNLHINVLKPDDTSQADFVAACDQV
TKLLAQALQRFDGSISAEHGIGLVKKAYLWSTRSAEEIALMRGIKHVLDPHLLLNPGKLFEIGKAPAATPAG

Sequences:

>Translated_472_residues
MTDPRILSLQHAMPALRLKTEPADLEHYGRDWTRRWTPNPLAIALPGSVEEVQAVMRWANVQGVAVVPSGGRTGLSGGAV
AANGELVLSLERLNKPLDFNAVDRTLTVQAGMPLEAVHNAAREHGLVYPVDFAARGSCSIGGNIATNAGGIRVIRYGNTR
EWVAGLKVVTGGGELLELNNALVKNSSGYDFRHLMIGSEGTLGIVVEATLRLTDPPPPSNVMLLALPSFEVLMQVFAAFR
AQLRLEAFEFFTDRALEHVLAHGAQAPFAEVHPYYVVTEFAAGDEVQEAAAMAAFETCIEQDWVSDGVISQSDAQAAQLW
RLREGITEAVARYTPYKNDVSVRISAMPAFLAETQALLSEAYPHFDVVWFGHIGDGNLHINVLKPDDTSQADFVAACDQV
TKLLAQALQRFDGSISAEHGIGLVKKAYLWSTRSAEEIALMRGIKHVLDPHLLLNPGKLFEIGKAPAATPAG
>Mature_471_residues
TDPRILSLQHAMPALRLKTEPADLEHYGRDWTRRWTPNPLAIALPGSVEEVQAVMRWANVQGVAVVPSGGRTGLSGGAVA
ANGELVLSLERLNKPLDFNAVDRTLTVQAGMPLEAVHNAAREHGLVYPVDFAARGSCSIGGNIATNAGGIRVIRYGNTRE
WVAGLKVVTGGGELLELNNALVKNSSGYDFRHLMIGSEGTLGIVVEATLRLTDPPPPSNVMLLALPSFEVLMQVFAAFRA
QLRLEAFEFFTDRALEHVLAHGAQAPFAEVHPYYVVTEFAAGDEVQEAAAMAAFETCIEQDWVSDGVISQSDAQAAQLWR
LREGITEAVARYTPYKNDVSVRISAMPAFLAETQALLSEAYPHFDVVWFGHIGDGNLHINVLKPDDTSQADFVAACDQVT
KLLAQALQRFDGSISAEHGIGLVKKAYLWSTRSAEEIALMRGIKHVLDPHLLLNPGKLFEIGKAPAATPAG

Specific function: Unknown

COG id: COG0277

COG function: function code C; FAD/FMN-containing dehydrogenases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 FAD-binding PCMH-type domain [H]

Homologues:

Organism=Homo sapiens, GI119964728, Length=444, Percent_Identity=35.5855855855856, Blast_Score=259, Evalue=4e-69,
Organism=Homo sapiens, GI37595756, Length=446, Percent_Identity=30.4932735426009, Blast_Score=179, Evalue=4e-45,
Organism=Homo sapiens, GI37595754, Length=469, Percent_Identity=28.997867803838, Blast_Score=170, Evalue=3e-42,
Organism=Homo sapiens, GI4501993, Length=270, Percent_Identity=25.9259259259259, Blast_Score=80, Evalue=6e-15,
Organism=Escherichia coli, GI1789351, Length=460, Percent_Identity=31.304347826087, Blast_Score=177, Evalue=1e-45,
Organism=Escherichia coli, GI1787977, Length=498, Percent_Identity=24.0963855421687, Blast_Score=98, Evalue=1e-21,
Organism=Escherichia coli, GI48994907, Length=485, Percent_Identity=22.8865979381443, Blast_Score=95, Evalue=1e-20,
Organism=Escherichia coli, GI48994914, Length=162, Percent_Identity=28.3950617283951, Blast_Score=71, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17534361, Length=450, Percent_Identity=33.1111111111111, Blast_Score=239, Evalue=3e-63,
Organism=Caenorhabditis elegans, GI71992373, Length=462, Percent_Identity=28.7878787878788, Blast_Score=176, Evalue=2e-44,
Organism=Caenorhabditis elegans, GI71992381, Length=462, Percent_Identity=27.7056277056277, Blast_Score=159, Evalue=3e-39,
Organism=Caenorhabditis elegans, GI71992392, Length=368, Percent_Identity=29.8913043478261, Blast_Score=139, Evalue=4e-33,
Organism=Caenorhabditis elegans, GI17556096, Length=201, Percent_Identity=24.8756218905473, Blast_Score=72, Evalue=6e-13,
Organism=Saccharomyces cerevisiae, GI6320023, Length=476, Percent_Identity=36.5546218487395, Blast_Score=297, Evalue=3e-81,
Organism=Saccharomyces cerevisiae, GI6320764, Length=450, Percent_Identity=32.2222222222222, Blast_Score=261, Evalue=1e-70,
Organism=Saccharomyces cerevisiae, GI6320027, Length=443, Percent_Identity=25.9593679458239, Blast_Score=149, Evalue=8e-37,
Organism=Drosophila melanogaster, GI18921117, Length=468, Percent_Identity=33.7606837606838, Blast_Score=254, Evalue=9e-68,
Organism=Drosophila melanogaster, GI24639277, Length=468, Percent_Identity=33.7606837606838, Blast_Score=254, Evalue=9e-68,
Organism=Drosophila melanogaster, GI24639275, Length=468, Percent_Identity=33.7606837606838, Blast_Score=254, Evalue=9e-68,
Organism=Drosophila melanogaster, GI24653753, Length=218, Percent_Identity=29.8165137614679, Blast_Score=94, Evalue=2e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016166
- InterPro:   IPR016167
- InterPro:   IPR016164
- InterPro:   IPR016168
- InterPro:   IPR004113
- InterPro:   IPR004490
- InterPro:   IPR006094
- InterPro:   IPR016171 [H]

Pfam domain/function: PF02913 FAD-oxidase_C; PF01565 FAD_binding_4 [H]

EC number: NA

Molecular weight: Translated: 51027; Mature: 50895

Theoretical pI: Translated: 5.42; Mature: 5.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDPRILSLQHAMPALRLKTEPADLEHYGRDWTRRWTPNPLAIALPGSVEEVQAVMRWAN
CCCCCEEEHHHCCCHHEEECCCCCHHHHCCCHHCCCCCCCEEEECCCCHHHHHHHHHHHC
VQGVAVVPSGGRTGLSGGAVAANGELVLSLERLNKPLDFNAVDRTLTVQAGMPLEAVHNA
CCEEEEECCCCCCCCCCCEEEECCCEEEEHHHCCCCCCCCCCCCEEEEECCCCHHHHHHH
AREHGLVYPVDFAARGSCSIGGNIATNAGGIRVIRYGNTREWVAGLKVVTGGGELLELNN
HHHCCCEEEECCCCCCCCCCCCCEEECCCCEEEEEECCCHHHHCCEEEEECCCCEEEECH
ALVKNSSGYDFRHLMIGSEGTLGIVVEATLRLTDPPPPSNVMLLALPSFEVLMQVFAAFR
HHEECCCCCCEEEEEECCCCCEEEEEEEEEEECCCCCCCCEEEEEECCHHHHHHHHHHHH
AQLRLEAFEFFTDRALEHVLAHGAQAPFAEVHPYYVVTEFAAGDEVQEAAAMAAFETCIE
HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCEEEEEEECCCCHHHHHHHHHHHHHHHH
QDWVSDGVISQSDAQAAQLWRLREGITEAVARYTPYKNDVSVRISAMPAFLAETQALLSE
HHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECHHHHHHHHHHHHHH
AYPHFDVVWFGHIGDGNLHINVLKPDDTSQADFVAACDQVTKLLAQALQRFDGSISAEHG
CCCCEEEEEEEEECCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
IGLVKKAYLWSTRSAEEIALMRGIKHVLDPHLLLNPGKLFEIGKAPAATPAG
CCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCEEECCCCEEEECCCCCCCCCC
>Mature Secondary Structure 
TDPRILSLQHAMPALRLKTEPADLEHYGRDWTRRWTPNPLAIALPGSVEEVQAVMRWAN
CCCCEEEHHHCCCHHEEECCCCCHHHHCCCHHCCCCCCCEEEECCCCHHHHHHHHHHHC
VQGVAVVPSGGRTGLSGGAVAANGELVLSLERLNKPLDFNAVDRTLTVQAGMPLEAVHNA
CCEEEEECCCCCCCCCCCEEEECCCEEEEHHHCCCCCCCCCCCCEEEEECCCCHHHHHHH
AREHGLVYPVDFAARGSCSIGGNIATNAGGIRVIRYGNTREWVAGLKVVTGGGELLELNN
HHHCCCEEEECCCCCCCCCCCCCEEECCCCEEEEEECCCHHHHCCEEEEECCCCEEEECH
ALVKNSSGYDFRHLMIGSEGTLGIVVEATLRLTDPPPPSNVMLLALPSFEVLMQVFAAFR
HHEECCCCCCEEEEEECCCCCEEEEEEEEEEECCCCCCCCEEEEEECCHHHHHHHHHHHH
AQLRLEAFEFFTDRALEHVLAHGAQAPFAEVHPYYVVTEFAAGDEVQEAAAMAAFETCIE
HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCEEEEEEECCCCHHHHHHHHHHHHHHHH
QDWVSDGVISQSDAQAAQLWRLREGITEAVARYTPYKNDVSVRISAMPAFLAETQALLSE
HHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECHHHHHHHHHHHHHH
AYPHFDVVWFGHIGDGNLHINVLKPDDTSQADFVAACDQVTKLLAQALQRFDGSISAEHG
CCCCEEEEEEEEECCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
IGLVKKAYLWSTRSAEEIALMRGIKHVLDPHLLLNPGKLFEIGKAPAATPAG
CCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCEEECCCCEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]