| Definition | Xanthomonas oryzae pv. oryzae MAFF 311018, complete genome. |
|---|---|
| Accession | NC_007705 |
| Length | 4,940,217 |
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The map label for this gene is 84623335
Identifier: 84623335
GI number: 84623335
Start: 1836657
End: 1837775
Strand: Direct
Name: 84623335
Synonym: XOO_1678
Alternate gene names: NA
Gene position: 1836657-1837775 (Clockwise)
Preceding gene: 84623334
Following gene: 84623336
Centisome position: 37.18
GC content: 52.01
Gene sequence:
>1119_bases ATGGGACCAGCGCACATCATCGTGGGGAATTCTGAAGATATCCATGCTGTGGCCGTAGCATGGGCGCTTGAGCGGGCGGG TGCAGGCGTTGTGTTATGGGATGGAATCGGTGTACCTGATAGTTCAGTCGTTACACACTTCCCTACTAGTGCGGGTTCCG ATTTGCGCATGGGGAAAGAGAGGATCAACGACGTACGTTCACTGTGGTTCAGGCGCCCAGTACCTTATCAGCCGCTGGCT GGACTAGATCCGGTGTCTCTGAAATTCACGCGCAACGAACTTCAGAGCGCGCATGGATCGCTAGCTGCGGTTCTTCGCTC CAAGGCTTCATTCATAGTTGGGGATTGGCATCCAATCGATGCAGGCATGAAAGGGCTCCAGCTCGATGCTGCAGTCGCAT GTGGATTTCGCATTCCAGATACGGTGATCACGAACGATCCTGCTGTCGTTGCTGATTTCCGCGCAAGACAGGAAAATCTC TTAGTGAAGCACTTCACTCCACACTTTTGGTCGAGCGAGCAGAATCGAAAGTGCTGGCAGTGTGGGCCTGTGGTGATCCC ACGAGATCGAAAAATTGACGATGCCAGTATCCGTGCATGCCCAGCGATCTACCAGACTTTGGTGAATAAAGCGTTTGATC TTCGAATCACCGTGATTGGACATCGTATTTTCTCTGCGAGAATTGTGGGGCATAATGGAACTGCGCTACTGGATTGGAGG CCAAGCTCAGTAAAGCCAGGTGAATTACGCATCGATTGGTACAACGTCGACGCACGAACACGCACCTCAATCAATGCGCT GATGGAGAAGCTTGACCTGCGATATGGCTGCATCGACCTTGCGGTCGACTTGCAGGGAAACATATTTTTCTTCGAGGTCA ACACTGGCGGTCAATTTCTATTTATTGATGACCACATCCCCGAGATGAACCTCCTTGGCGAGATGGCCGGTTTACTACTT GCCGGATCATCGGACTACCAGGCATTGCCATGGAATGTGGCAAACTTGCCTGACTTTGAGAGTAGCGATCGGTACGTCGA GTTTCGCGCTGCAACACAGCGCTTCCGACAGAACGACCGCGTGATTACCCGTGTAGACCAAGATATGGTGGCAATATGA
Upstream 100 bases:
>100_bases TTCAGCAACTATTGATTGGTAATATCTTCTTAACATATTGGCAAAAGCCCTCCCTCCGCCTTCCGGCGGAGGGAGTTAAA CGGATCAGGGAGCTAACCCT
Downstream 100 bases:
>100_bases GACTTTTTAGCGCACTGGTACTAGCGTCCCTGCTCTTCATAGATTCGTGCGGGGCGGTTGATCTGAGTCAAGCAATGGAT GCGTGCCCCGGCGCAGCGAA
Product: hypothetical protein
Products: NA
Alternate protein names: RimK Domain Protein ATP-Grasp; RimK-Like Protein; Rimk Domain Protein ATP-Grasp
Number of amino acids: Translated: 372; Mature: 371
Protein sequence:
>372_residues MGPAHIIVGNSEDIHAVAVAWALERAGAGVVLWDGIGVPDSSVVTHFPTSAGSDLRMGKERINDVRSLWFRRPVPYQPLA GLDPVSLKFTRNELQSAHGSLAAVLRSKASFIVGDWHPIDAGMKGLQLDAAVACGFRIPDTVITNDPAVVADFRARQENL LVKHFTPHFWSSEQNRKCWQCGPVVIPRDRKIDDASIRACPAIYQTLVNKAFDLRITVIGHRIFSARIVGHNGTALLDWR PSSVKPGELRIDWYNVDARTRTSINALMEKLDLRYGCIDLAVDLQGNIFFFEVNTGGQFLFIDDHIPEMNLLGEMAGLLL AGSSDYQALPWNVANLPDFESSDRYVEFRAATQRFRQNDRVITRVDQDMVAI
Sequences:
>Translated_372_residues MGPAHIIVGNSEDIHAVAVAWALERAGAGVVLWDGIGVPDSSVVTHFPTSAGSDLRMGKERINDVRSLWFRRPVPYQPLA GLDPVSLKFTRNELQSAHGSLAAVLRSKASFIVGDWHPIDAGMKGLQLDAAVACGFRIPDTVITNDPAVVADFRARQENL LVKHFTPHFWSSEQNRKCWQCGPVVIPRDRKIDDASIRACPAIYQTLVNKAFDLRITVIGHRIFSARIVGHNGTALLDWR PSSVKPGELRIDWYNVDARTRTSINALMEKLDLRYGCIDLAVDLQGNIFFFEVNTGGQFLFIDDHIPEMNLLGEMAGLLL AGSSDYQALPWNVANLPDFESSDRYVEFRAATQRFRQNDRVITRVDQDMVAI >Mature_371_residues GPAHIIVGNSEDIHAVAVAWALERAGAGVVLWDGIGVPDSSVVTHFPTSAGSDLRMGKERINDVRSLWFRRPVPYQPLAG LDPVSLKFTRNELQSAHGSLAAVLRSKASFIVGDWHPIDAGMKGLQLDAAVACGFRIPDTVITNDPAVVADFRARQENLL VKHFTPHFWSSEQNRKCWQCGPVVIPRDRKIDDASIRACPAIYQTLVNKAFDLRITVIGHRIFSARIVGHNGTALLDWRP SSVKPGELRIDWYNVDARTRTSINALMEKLDLRYGCIDLAVDLQGNIFFFEVNTGGQFLFIDDHIPEMNLLGEMAGLLLA GSSDYQALPWNVANLPDFESSDRYVEFRAATQRFRQNDRVITRVDQDMVAI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 41403; Mature: 41271
Theoretical pI: Translated: 6.68; Mature: 6.68
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGPAHIIVGNSEDIHAVAVAWALERAGAGVVLWDGIGVPDSSVVTHFPTSAGSDLRMGKE CCCCEEEECCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCEEEECCCCCCCHHHHHHH RINDVRSLWFRRPVPYQPLAGLDPVSLKFTRNELQSAHGSLAAVLRSKASFIVGDWHPID HHHHHHHHHHCCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHCCCCEEEECCEECC AGMKGLQLDAAVACGFRIPDTVITNDPAVVADFRARQENLLVKHFTPHFWSSEQNRKCWQ CCCCCEEEEEEEEECCCCCCCEEECCCCEEEHHHHHHHCEEEEECCCCCCCCCCCCCCEE CGPVVIPRDRKIDDASIRACPAIYQTLVNKAFDLRITVIGHRIFSARIVGHNGTALLDWR CCCEEECCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEEEEEEEEEEEECCCCCEEEEEC PSSVKPGELRIDWYNVDARTRTSINALMEKLDLRYGCIDLAVDLQGNIFFFEVNTGGQFL CCCCCCCEEEEEEEECCCCHHHHHHHHHHHHCCCCCEEEEEEEECCCEEEEEECCCCEEE FIDDHIPEMNLLGEMAGLLLAGSSDYQALPWNVANLPDFESSDRYVEFRAATQRFRQNDR EEECCCCCHHHHHHHHHEEEECCCCCEECCCCCCCCCCCCCCCCEEEEHHHHHHHHCCCC VITRVDQDMVAI EEEEECCHHHCC >Mature Secondary Structure GPAHIIVGNSEDIHAVAVAWALERAGAGVVLWDGIGVPDSSVVTHFPTSAGSDLRMGKE CCCEEEECCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCEEEECCCCCCCHHHHHHH RINDVRSLWFRRPVPYQPLAGLDPVSLKFTRNELQSAHGSLAAVLRSKASFIVGDWHPID HHHHHHHHHHCCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHCCCCEEEECCEECC AGMKGLQLDAAVACGFRIPDTVITNDPAVVADFRARQENLLVKHFTPHFWSSEQNRKCWQ CCCCCEEEEEEEEECCCCCCCEEECCCCEEEHHHHHHHCEEEEECCCCCCCCCCCCCCEE CGPVVIPRDRKIDDASIRACPAIYQTLVNKAFDLRITVIGHRIFSARIVGHNGTALLDWR CCCEEECCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEEEEEEEEEEEECCCCCEEEEEC PSSVKPGELRIDWYNVDARTRTSINALMEKLDLRYGCIDLAVDLQGNIFFFEVNTGGQFL CCCCCCCEEEEEEEECCCCHHHHHHHHHHHHCCCCCEEEEEEEECCCEEEEEECCCCEEE FIDDHIPEMNLLGEMAGLLLAGSSDYQALPWNVANLPDFESSDRYVEFRAATQRFRQNDR EEECCCCCHHHHHHHHHEEEECCCCCEECCCCCCCCCCCCCCCCEEEEHHHHHHHHCCCC VITRVDQDMVAI EEEEECCHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA