| Definition | Xanthomonas oryzae pv. oryzae MAFF 311018, complete genome. |
|---|---|
| Accession | NC_007705 |
| Length | 4,940,217 |
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The map label for this gene is mchE [H]
Identifier: 84623334
GI number: 84623334
Start: 1834718
End: 1835962
Strand: Direct
Name: mchE [H]
Synonym: XOO_1677
Alternate gene names: 84623334
Gene position: 1834718-1835962 (Clockwise)
Preceding gene: 84623333
Following gene: 84623335
Centisome position: 37.14
GC content: 64.26
Gene sequence:
>1245_bases ATGACCCTGTTCCGCGAGGAGGTCATGCAAGCACGCCGCAACAGTTGGCTGGGCGGCATCTCCCTGGCGCAGCCTGTGCG GGCATGGGTGCTCGCCAGCGCCGCCGGGATCGTGGCGGCATCTGTCGTGGTCTTCCTGTGCATGGGCACCTATGCCCACC GCTCCACGGTGACCGGACAACTCGTACCGATCAAGGGCCTGGCCACGGTGATGGCGCCGGCCACCGGCGTCGTGAGCCGG CTGGACGTCAGCGAAGGGCAACCGGTCAAGGCCGGGCAGATGCTCGCCGTGGTCGCGGTTCCGCGCGCGACCCTGGACAG CGGCGACACGCAGGCGGCACTGCAACACCAATTGCGCAAGCGCGGCGAAGGCGTGAAATCATCCGAGCAAGCGCAGTTGC AGCAACTGGATGCGCAAGAACAGGGCTTGCGTGCGCAGTTGGCCAATCTGCGCCAGGAATTGATGCAGGTGGACGCAGAA ATCGCCACCCGTCGCAACCAGATCGCGCTTGCCAATGAGGTGTTGCAACGCTGGCGCCAATTGCAGGACGACAAATACGT CAGCGTGCTGCAGATCAAGCAGCAGGAATCCACCGCTCTGGAATACACCAGCCAGATGCAGGCCTTGCAGCGGCAGGCGA CCGAGATGCGACGCAGCGCGGCGCAGATCGAACAGCAACTACGCGTGTTGCCGGGGCAGCGCGGGGGCGTGCAGGCCGAT TATCGACGGGATGCGGCGGCGGTGGAGCAGGAACAGGTGCAAACCCAGGTCAATGGCGCCTTGGTGGTGACGGCGCCCGT GGCAGGCGTGGTGGCCACGCAGATGGCAAAACCGGGGCAAGCGATCCAGCTCGGGCAGCCGCTGCTGAGCGTGGTGCCGG GCGATGGACGCCTGGAAGCCGAATTGCTGGTCCCCAGCCGCGCTATCGGCTTTATCGCCCCAGGCGATACCGTGTTGCTG CGCTATCAAGCCTTCCCGTACCAGAAGTTTGGTCACCAGCAAGGCCGCCTGAGCCGGATCAGCCGCAGTGCGCTGAGTTC GAGTGAGTTGGGTGCGTTGATCGGCAATGTCCAGCAGGGCGAACCGTATTACCGGGTAACCGTCGGGCTGGGGCGGCAAA GTGTCATGGCCTACGGCAAGCCCGAAATGCTCAAGCCGGGGATGCTGTTGCAGGCCGACATCATCGGCGAGCGGAGAAAG TTGATCGAATGGGTGTTTGAACCATTGTTGTCGCTTGGGAGGTGA
Upstream 100 bases:
>100_bases TGCCGATCCTGGAGGCAGTGTTGATCGGCACATTCACCATGTGCGCGATGGTGGTGTCCGCTCGCCATGTAACCCGCCGT ACCGGTCCAGAACACACGCC
Downstream 100 bases:
>100_bases TCGGTTTGGATGCATCGACGGAAGCGACGCCTGTAATCAAGATGTTCAAGAGTGCTTTGCGAGTGAGATCGCCAGCCAAT CGCTGACACCTACGGTGCAA
Product: colicin V secretion protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 414; Mature: 413
Protein sequence:
>414_residues MTLFREEVMQARRNSWLGGISLAQPVRAWVLASAAGIVAASVVVFLCMGTYAHRSTVTGQLVPIKGLATVMAPATGVVSR LDVSEGQPVKAGQMLAVVAVPRATLDSGDTQAALQHQLRKRGEGVKSSEQAQLQQLDAQEQGLRAQLANLRQELMQVDAE IATRRNQIALANEVLQRWRQLQDDKYVSVLQIKQQESTALEYTSQMQALQRQATEMRRSAAQIEQQLRVLPGQRGGVQAD YRRDAAAVEQEQVQTQVNGALVVTAPVAGVVATQMAKPGQAIQLGQPLLSVVPGDGRLEAELLVPSRAIGFIAPGDTVLL RYQAFPYQKFGHQQGRLSRISRSALSSSELGALIGNVQQGEPYYRVTVGLGRQSVMAYGKPEMLKPGMLLQADIIGERRK LIEWVFEPLLSLGR
Sequences:
>Translated_414_residues MTLFREEVMQARRNSWLGGISLAQPVRAWVLASAAGIVAASVVVFLCMGTYAHRSTVTGQLVPIKGLATVMAPATGVVSR LDVSEGQPVKAGQMLAVVAVPRATLDSGDTQAALQHQLRKRGEGVKSSEQAQLQQLDAQEQGLRAQLANLRQELMQVDAE IATRRNQIALANEVLQRWRQLQDDKYVSVLQIKQQESTALEYTSQMQALQRQATEMRRSAAQIEQQLRVLPGQRGGVQAD YRRDAAAVEQEQVQTQVNGALVVTAPVAGVVATQMAKPGQAIQLGQPLLSVVPGDGRLEAELLVPSRAIGFIAPGDTVLL RYQAFPYQKFGHQQGRLSRISRSALSSSELGALIGNVQQGEPYYRVTVGLGRQSVMAYGKPEMLKPGMLLQADIIGERRK LIEWVFEPLLSLGR >Mature_413_residues TLFREEVMQARRNSWLGGISLAQPVRAWVLASAAGIVAASVVVFLCMGTYAHRSTVTGQLVPIKGLATVMAPATGVVSRL DVSEGQPVKAGQMLAVVAVPRATLDSGDTQAALQHQLRKRGEGVKSSEQAQLQQLDAQEQGLRAQLANLRQELMQVDAEI ATRRNQIALANEVLQRWRQLQDDKYVSVLQIKQQESTALEYTSQMQALQRQATEMRRSAAQIEQQLRVLPGQRGGVQADY RRDAAAVEQEQVQTQVNGALVVTAPVAGVVATQMAKPGQAIQLGQPLLSVVPGDGRLEAELLVPSRAIGFIAPGDTVLLR YQAFPYQKFGHQQGRLSRISRSALSSSELGALIGNVQQGEPYYRVTVGLGRQSVMAYGKPEMLKPGMLLQADIIGERRKL IEWVFEPLLSLGR
Specific function: Probably involved, in conjunction with mchF, in the secretion of microcin H47 [H]
COG id: COG0845
COG function: function code M; Membrane-fusion protein
Gene ontology:
Cell location: Cell inner membrane; Single-pass membrane protein [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003997 - InterPro: IPR006143 - InterPro: IPR006144 - InterPro: IPR011053 [H]
Pfam domain/function: PF00529 HlyD [H]
EC number: NA
Molecular weight: Translated: 45102; Mature: 44970
Theoretical pI: Translated: 10.16; Mature: 10.16
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTLFREEVMQARRNSWLGGISLAQPVRAWVLASAAGIVAASVVVFLCMGTYAHRSTVTGQ CCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCE LVPIKGLATVMAPATGVVSRLDVSEGQPVKAGQMLAVVAVPRATLDSGDTQAALQHQLRK EEEHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCEEEEEEECCHHCCCCCHHHHHHHHHHH RGEGVKSSEQAQLQQLDAQEQGLRAQLANLRQELMQVDAEIATRRNQIALANEVLQRWRQ HCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH LQDDKYVSVLQIKQQESTALEYTSQMQALQRQATEMRRSAAQIEQQLRVLPGQRGGVQAD HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCH YRRDAAAVEQEQVQTQVNGALVVTAPVAGVVATQMAKPGQAIQLGQPLLSVVPGDGRLEA HHHHHHHHHHHHHHHHHCCEEEEECCHHHHHHHHHCCCCCCCHHCCHHHHHCCCCCCEEE ELLVPSRAIGFIAPGDTVLLRYQAFPYQKFGHQQGRLSRISRSALSSSELGALIGNVQQG EEECCCCCCEEECCCCEEEEEEECCCHHHHCCCCHHHHHHHHHHHCHHHHHHHHCCCCCC EPYYRVTVGLGRQSVMAYGKPEMLKPGMLLQADIIGERRKLIEWVFEPLLSLGR CCEEEEEEECCCHHHHHCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure TLFREEVMQARRNSWLGGISLAQPVRAWVLASAAGIVAASVVVFLCMGTYAHRSTVTGQ CCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCE LVPIKGLATVMAPATGVVSRLDVSEGQPVKAGQMLAVVAVPRATLDSGDTQAALQHQLRK EEEHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCEEEEEEECCHHCCCCCHHHHHHHHHHH RGEGVKSSEQAQLQQLDAQEQGLRAQLANLRQELMQVDAEIATRRNQIALANEVLQRWRQ HCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH LQDDKYVSVLQIKQQESTALEYTSQMQALQRQATEMRRSAAQIEQQLRVLPGQRGGVQAD HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCH YRRDAAAVEQEQVQTQVNGALVVTAPVAGVVATQMAKPGQAIQLGQPLLSVVPGDGRLEA HHHHHHHHHHHHHHHHHCCEEEEECCHHHHHHHHHCCCCCCCHHCCHHHHHCCCCCCEEE ELLVPSRAIGFIAPGDTVLLRYQAFPYQKFGHQQGRLSRISRSALSSSELGALIGNVQQG EEECCCCCCEEECCCCEEEEEEECCCHHHHCCCCHHHHHHHHHHHCHHHHHHHHCCCCCC EPYYRVTVGLGRQSVMAYGKPEMLKPGMLLQADIIGERRKLIEWVFEPLLSLGR CCEEEEEEECCCHHHHHCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11181394 [H]