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The map label for this gene is yoaA [C]

Identifier: 84623299

GI number: 84623299

Start: 1790982

End: 1793009

Strand: Direct

Name: yoaA [C]

Synonym: XOO_1642

Alternate gene names: 84623299

Gene position: 1790982-1793009 (Clockwise)

Preceding gene: 84623298

Following gene: 84623300

Centisome position: 36.25

GC content: 66.22

Gene sequence:

>2028_bases
ATGTCCCAACTTGCCACTGTCAGCATCGAAGCGCTCAGCGAGGGTGGGGCGCTTGCGCGTCAGCTCGACGCCTTCGCGCC
ACGTGCTGCGCAGTTGCGCCTGACCGGAGCGATTGCCGAGGCATTCGAGCAGCGCGATGTGTTGCTGGCAGAGGCCGGCA
CCGGCACCGGCAAGACCTACGCCTATCTGGTGCCGGCGCTGCTGTCCGGGCTCAAGACCATCGTTTCCACCGGCACGCGC
GCGCTGCAGGATCAGCTGTTCCATCGCGATCTGCCGCGCGTGCGCGCCGCGCTGGGCGTGGGCCTGCGTAGCGCGTTGCT
GAAGGGCCGCGCCAACTATCTGTGCAAGTACCGCACCCAGCAGGCGCGCGGTGAGCCGCGCTTTGCCACGCCCGAACAGG
TCTCGCAGTTCCAGCGCATCGTGGCCTGGAGCGGGCGCACCCAGTCCGGCGACATGGCCGAACTCGAAGCCTTGCCCGAC
GACTCGCCGCTGCTGCCGATGGTGACCTCCACCGTCGACAACTGCCTGGGCACCGAATGCCCGTTCTATAGCGAGTGCTT
CGTGGTGCAAGCGCGCCAGCGTGCGCAAGCGGCCGATCTGGTGGTGGTCAATCACCATCTGCTGCTGGCCGATCTGGCGC
TCAAGCAGGAAGGCTTCGGCGAAATCCTGCCTGGCGCGCAGGCCTTCGTCATCGACGAAGCGCATCAATTGCCGGAGCTG
GCGGCCAATTTCTTCGGCGAAAGTTTCGGCATGCGGCCGTGGCAGGAGCTGGCGCGCGACTGCATGGTCGAAGCGCGCCT
GGTGGCCGGCGCGCAAGCCAGCCTGCAGGCGCCGATCCTGGCTCTGGACGACGCCTTGCGCAGCCTGCGCGCCGGCATGG
AGGGGTTGCCGGCGCGTGGCACGCAATGGCGTGCGCTGGCCAAGCCGCAGGTGCGCGAAGGGTTCGACGCGGTGCTGTCG
TCATTGGCACGGTTGGGCCAATCCCTGCTGCCTTTGCGTGAGGCCTCGCCTGGCTTCGATGGCTGCACCGCACGTGCGCA
AGAAGCCTTGAATCGCCTGTCGCGCTGGTTGGGCGAAGACGTGTCAGTAGCTGATTTCGCGCAGGATCCGCCAGAAGAGA
CCGTCGACAACGATGTGCTCTGGTACGAACTCAGCCCGCGCGGCTTCCGCTGCCAGCGCACGCCGCTGGATGTATCCGGC
CCGTTGCGCGAGCATCGCGAAAAATCGCATGCAGCCTGGGTATTCACCTCGGCCACGCTGGCGGTGGGCGGCGAGTTCGA
CCACATTGCGCAGCGTCTGGGTTTGAATGATCCGGTGACCTTGCTGCAACCCAGCCCGTTCGATTGGGCGCGTCAGGCCT
TGTGCTATCTGCCGCCGAACCTGCCCGATCCGGCCGCACGCGGGTTTGGCACTGCGCTGATCGGTGCGCTGACGCCGGTG
CTGGAAGCCTCCAAAGGCCGTGCGTTTCTATTGTTCGCCTCGCACCGCGCGCTGCGCGAAGCGGCCGAAGCCTTGCGCGG
TGCGCCGTGGCCGTTATTCGTGCAGGGTGAGGCGCCGCGCGCGACCTTGCTACAGCGCTTCCGCGATTCCGGTAACGGTG
TGCTGCTGGGCTCGGCCAGTTTCCGCGAGGGCGTGGACGTGGTCGGCGATGCCTTGAGCGTGGTGGTGATCGACAAGCTG
CCGTTCGCCGCGCCCGACGACCCGGTGTTCGAAGCGCGCCTGGATGCGATTCGCCGCGAGGGCGGCAACCCGTTCCGCGA
CGAGCAGCTGCCGCAGGCGGTGATCGCGCTCAAGCAGGGCGTGGGTCGACTCATTCGCAGCGAAACCGACCGTGGCGTGC
TGGTGCTGTGCGACCCGCGGCTGGTCAACAAAAGCTATGGACGCACCTTCATGAAATCGCTGCCGCCATTTGCGCGCACC
CACGCCATAGCCGATGTGCAAGCGTTTTTTGGTGTTGCAGAGGCGGTGGGCGACAATGGCGTACTCGCGTTGCCGTTCGG
CGATGATCGATCTTCTTATTTTTTCTGA

Upstream 100 bases:

>100_bases
AGCGTGCCTGCGCCTGGCTGCACTCCGTCACGTACACCCAGCCGCATCACTGCGCACGCGCTAGGCTGTCGCGCTTCCTC
TGCGCTTTCCGTTTGGTCTC

Downstream 100 bases:

>100_bases
CTGCGGCCCTGCCATGAACGTCCTCGCCTTCGAGACCTCCACCGAAGCCTGTTCCGTCGCCGTGCACGTCGACGGTCGCG
TGATCGAGCGCTTCGAACTG

Product: ATP-dependent helicase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 675; Mature: 674

Protein sequence:

>675_residues
MSQLATVSIEALSEGGALARQLDAFAPRAAQLRLTGAIAEAFEQRDVLLAEAGTGTGKTYAYLVPALLSGLKTIVSTGTR
ALQDQLFHRDLPRVRAALGVGLRSALLKGRANYLCKYRTQQARGEPRFATPEQVSQFQRIVAWSGRTQSGDMAELEALPD
DSPLLPMVTSTVDNCLGTECPFYSECFVVQARQRAQAADLVVVNHHLLLADLALKQEGFGEILPGAQAFVIDEAHQLPEL
AANFFGESFGMRPWQELARDCMVEARLVAGAQASLQAPILALDDALRSLRAGMEGLPARGTQWRALAKPQVREGFDAVLS
SLARLGQSLLPLREASPGFDGCTARAQEALNRLSRWLGEDVSVADFAQDPPEETVDNDVLWYELSPRGFRCQRTPLDVSG
PLREHREKSHAAWVFTSATLAVGGEFDHIAQRLGLNDPVTLLQPSPFDWARQALCYLPPNLPDPAARGFGTALIGALTPV
LEASKGRAFLLFASHRALREAAEALRGAPWPLFVQGEAPRATLLQRFRDSGNGVLLGSASFREGVDVVGDALSVVVIDKL
PFAAPDDPVFEARLDAIRREGGNPFRDEQLPQAVIALKQGVGRLIRSETDRGVLVLCDPRLVNKSYGRTFMKSLPPFART
HAIADVQAFFGVAEAVGDNGVLALPFGDDRSSYFF

Sequences:

>Translated_675_residues
MSQLATVSIEALSEGGALARQLDAFAPRAAQLRLTGAIAEAFEQRDVLLAEAGTGTGKTYAYLVPALLSGLKTIVSTGTR
ALQDQLFHRDLPRVRAALGVGLRSALLKGRANYLCKYRTQQARGEPRFATPEQVSQFQRIVAWSGRTQSGDMAELEALPD
DSPLLPMVTSTVDNCLGTECPFYSECFVVQARQRAQAADLVVVNHHLLLADLALKQEGFGEILPGAQAFVIDEAHQLPEL
AANFFGESFGMRPWQELARDCMVEARLVAGAQASLQAPILALDDALRSLRAGMEGLPARGTQWRALAKPQVREGFDAVLS
SLARLGQSLLPLREASPGFDGCTARAQEALNRLSRWLGEDVSVADFAQDPPEETVDNDVLWYELSPRGFRCQRTPLDVSG
PLREHREKSHAAWVFTSATLAVGGEFDHIAQRLGLNDPVTLLQPSPFDWARQALCYLPPNLPDPAARGFGTALIGALTPV
LEASKGRAFLLFASHRALREAAEALRGAPWPLFVQGEAPRATLLQRFRDSGNGVLLGSASFREGVDVVGDALSVVVIDKL
PFAAPDDPVFEARLDAIRREGGNPFRDEQLPQAVIALKQGVGRLIRSETDRGVLVLCDPRLVNKSYGRTFMKSLPPFART
HAIADVQAFFGVAEAVGDNGVLALPFGDDRSSYFF
>Mature_674_residues
SQLATVSIEALSEGGALARQLDAFAPRAAQLRLTGAIAEAFEQRDVLLAEAGTGTGKTYAYLVPALLSGLKTIVSTGTRA
LQDQLFHRDLPRVRAALGVGLRSALLKGRANYLCKYRTQQARGEPRFATPEQVSQFQRIVAWSGRTQSGDMAELEALPDD
SPLLPMVTSTVDNCLGTECPFYSECFVVQARQRAQAADLVVVNHHLLLADLALKQEGFGEILPGAQAFVIDEAHQLPELA
ANFFGESFGMRPWQELARDCMVEARLVAGAQASLQAPILALDDALRSLRAGMEGLPARGTQWRALAKPQVREGFDAVLSS
LARLGQSLLPLREASPGFDGCTARAQEALNRLSRWLGEDVSVADFAQDPPEETVDNDVLWYELSPRGFRCQRTPLDVSGP
LREHREKSHAAWVFTSATLAVGGEFDHIAQRLGLNDPVTLLQPSPFDWARQALCYLPPNLPDPAARGFGTALIGALTPVL
EASKGRAFLLFASHRALREAAEALRGAPWPLFVQGEAPRATLLQRFRDSGNGVLLGSASFREGVDVVGDALSVVVIDKLP
FAAPDDPVFEARLDAIRREGGNPFRDEQLPQAVIALKQGVGRLIRSETDRGVLVLCDPRLVNKSYGRTFMKSLPPFARTH
AIADVQAFFGVAEAVGDNGVLALPFGDDRSSYFF

Specific function: Unknown

COG id: COG1199

COG function: function code KL; Rad3-related DNA helicases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 helicase C-terminal domain [H]

Homologues:

Organism=Escherichia coli, GI1788110, Length=643, Percent_Identity=43.0793157076205, Blast_Score=497, Evalue=1e-141,
Organism=Escherichia coli, GI1787018, Length=699, Percent_Identity=28.1831187410587, Blast_Score=165, Evalue=1e-41,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014001
- InterPro:   IPR014013
- InterPro:   IPR006555
- InterPro:   IPR001650
- InterPro:   IPR006935 [H]

Pfam domain/function: PF04851 ResIII [H]

EC number: =3.6.4.12 [H]

Molecular weight: Translated: 73180; Mature: 73049

Theoretical pI: Translated: 5.60; Mature: 5.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQLATVSIEALSEGGALARQLDAFAPRAAQLRLTGAIAEAFEQRDVLLAEAGTGTGKTY
CCCCCEEEHHHHHCCCHHHHHHHHHCCCHHHEEHHHHHHHHHHHCCEEEEECCCCCCCHH
AYLVPALLSGLKTIVSTGTRALQDQLFHRDLPRVRAALGVGLRSALLKGRANYLCKYRTQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QARGEPRFATPEQVSQFQRIVAWSGRTQSGDMAELEALPDDSPLLPMVTSTVDNCLGTEC
HHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHCCCC
PFYSECFVVQARQRAQAADLVVVNHHLLLADLALKQEGFGEILPGAQAFVIDEAHQLPEL
CCHHHHHHHHHHHHHHHHCEEEECCHHHHHHHHHHHCCCCCCCCCCCEEEEHHHHHHHHH
AANFFGESFGMRPWQELARDCMVEARLVAGAQASLQAPILALDDALRSLRAGMEGLPARG
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHCCCCCCCCC
TQWRALAKPQVREGFDAVLSSLARLGQSLLPLREASPGFDGCTARAQEALNRLSRWLGED
CCCHHCCCCHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCHHHHHHHHHHHHHHHHHCCC
VSVADFAQDPPEETVDNDVLWYELSPRGFRCQRTPLDVSGPLREHREKSHAAWVFTSATL
CCHHHHCCCCCHHHCCCCEEEEEECCCCCEEECCCCCCCCCHHHHHHHCCEEEEEEEEHE
AVGGEFDHIAQRLGLNDPVTLLQPSPFDWARQALCYLPPNLPDPAARGFGTALIGALTPV
EECCCHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
LEASKGRAFLLFASHRALREAAEALRGAPWPLFVQGEAPRATLLQRFRDSGNGVLLGSAS
HHCCCCCEEEEEHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHCCCCEEEEECCH
FREGVDVVGDALSVVVIDKLPFAAPDDPVFEARLDAIRREGGNPFRDEQLPQAVIALKQG
HHCCHHHHHHHHEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
VGRLIRSETDRGVLVLCDPRLVNKSYGRTFMKSLPPFARTHAIADVQAFFGVAEAVGDNG
HHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCC
VLALPFGDDRSSYFF
EEEEECCCCCCCCCC
>Mature Secondary Structure 
SQLATVSIEALSEGGALARQLDAFAPRAAQLRLTGAIAEAFEQRDVLLAEAGTGTGKTY
CCCCEEEHHHHHCCCHHHHHHHHHCCCHHHEEHHHHHHHHHHHCCEEEEECCCCCCCHH
AYLVPALLSGLKTIVSTGTRALQDQLFHRDLPRVRAALGVGLRSALLKGRANYLCKYRTQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QARGEPRFATPEQVSQFQRIVAWSGRTQSGDMAELEALPDDSPLLPMVTSTVDNCLGTEC
HHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHCCCC
PFYSECFVVQARQRAQAADLVVVNHHLLLADLALKQEGFGEILPGAQAFVIDEAHQLPEL
CCHHHHHHHHHHHHHHHHCEEEECCHHHHHHHHHHHCCCCCCCCCCCEEEEHHHHHHHHH
AANFFGESFGMRPWQELARDCMVEARLVAGAQASLQAPILALDDALRSLRAGMEGLPARG
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHCCCCCCCCC
TQWRALAKPQVREGFDAVLSSLARLGQSLLPLREASPGFDGCTARAQEALNRLSRWLGED
CCCHHCCCCHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCHHHHHHHHHHHHHHHHHCCC
VSVADFAQDPPEETVDNDVLWYELSPRGFRCQRTPLDVSGPLREHREKSHAAWVFTSATL
CCHHHHCCCCCHHHCCCCEEEEEECCCCCEEECCCCCCCCCHHHHHHHCCEEEEEEEEHE
AVGGEFDHIAQRLGLNDPVTLLQPSPFDWARQALCYLPPNLPDPAARGFGTALIGALTPV
EECCCHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
LEASKGRAFLLFASHRALREAAEALRGAPWPLFVQGEAPRATLLQRFRDSGNGVLLGSAS
HHCCCCCEEEEEHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHCCCCEEEEECCH
FREGVDVVGDALSVVVIDKLPFAAPDDPVFEARLDAIRREGGNPFRDEQLPQAVIALKQG
HHCCHHHHHHHHEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
VGRLIRSETDRGVLVLCDPRLVNKSYGRTFMKSLPPFARTHAIADVQAFFGVAEAVGDNG
HHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCC
VLALPFGDDRSSYFF
EEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]