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The map label for this gene is ygcF [C]

Identifier: 84623212

GI number: 84623212

Start: 1711033

End: 1711716

Strand: Direct

Name: ygcF [C]

Synonym: XOO_1555

Alternate gene names: 84623212

Gene position: 1711033-1711716 (Clockwise)

Preceding gene: 84623211

Following gene: 84623213

Centisome position: 34.63

GC content: 62.57

Gene sequence:

>684_bases
ATGAACGCTGCCACCGTCCCTAGCGAGATTATTCAATCGCCCTTGCCGCGATTGAAGATCACCGAAATCTTTTTGTCCTT
GCAAGGCGAAGCCGAAGCCGCTGGCTGGCCGACGGTGTTCGTGCGTCTGACCGGCTGCCCACTGCGCTGCGTGTATTGCG
ACACCGCCTACGCCTTCCATGGCGGCGAGTGGCATGACATCGACGACGTCCTCGCCGAAGTCGCCACGCATGGCGTGCGC
CATGTCTGCGTGACCGGCGGGGAGCCATTGGCGCAGAAGCGTTGTCTGGTGTTGCTGCAGAAACTCTGCGATGCCGGTTA
CGACGTGTCGCTGGAGACGTCCGGTGCGCTGGACGTGTCCGCTGTCGATCCACGCGTCTCGCGCGTGGTCGACATCAAGA
CACCCGCATCCGGCGAAGAAGCACGCAACCGCTGGGAAAACCTGCTGCTGCTGACCGCGCGCGACCAGATCAAGTTCGTG
ATCTGCAGCCGTGCCGATTACGAATGGTCGCGTGAGATCGTCGCCGCGCACGCGCTGGATCGCCGCTGCACGGTGTGGTT
TTCGCCGAGCAAAAGTGAAGTCGGCCCGCGACAGCTGGCCGACTGGATCGTGGCCGACCGCTTGCCGGTGCGCTTCCAGA
TGCAGTTGCATAAGCTGCTTTGGAATGATGAGCCTGGGCGCTGA

Upstream 100 bases:

>100_bases
GGCACGCGTCGCTCAGGAACGCCTGCAGTCCATCCGCCTCGGCCAGCAACTGCGCTGAGCCCGCGCGTCTGTGCTTGTCG
GCACGGCGCATACTTTGCCC

Downstream 100 bases:

>100_bases
GGATCAAGCGCGTAGCGCAGCGGATTGGCCTAGTGTCTGACGCTGGTAAACAGATCTAGACGGTGTGTTGCTCTGCTCAG
GCAGCGGGTGACCCCAGAAA

Product: radical activating enzyme

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 227; Mature: 227

Protein sequence:

>227_residues
MNAATVPSEIIQSPLPRLKITEIFLSLQGEAEAAGWPTVFVRLTGCPLRCVYCDTAYAFHGGEWHDIDDVLAEVATHGVR
HVCVTGGEPLAQKRCLVLLQKLCDAGYDVSLETSGALDVSAVDPRVSRVVDIKTPASGEEARNRWENLLLLTARDQIKFV
ICSRADYEWSREIVAAHALDRRCTVWFSPSKSEVGPRQLADWIVADRLPVRFQMQLHKLLWNDEPGR

Sequences:

>Translated_227_residues
MNAATVPSEIIQSPLPRLKITEIFLSLQGEAEAAGWPTVFVRLTGCPLRCVYCDTAYAFHGGEWHDIDDVLAEVATHGVR
HVCVTGGEPLAQKRCLVLLQKLCDAGYDVSLETSGALDVSAVDPRVSRVVDIKTPASGEEARNRWENLLLLTARDQIKFV
ICSRADYEWSREIVAAHALDRRCTVWFSPSKSEVGPRQLADWIVADRLPVRFQMQLHKLLWNDEPGR
>Mature_227_residues
MNAATVPSEIIQSPLPRLKITEIFLSLQGEAEAAGWPTVFVRLTGCPLRCVYCDTAYAFHGGEWHDIDDVLAEVATHGVR
HVCVTGGEPLAQKRCLVLLQKLCDAGYDVSLETSGALDVSAVDPRVSRVVDIKTPASGEEARNRWENLLLLTARDQIKFV
ICSRADYEWSREIVAAHALDRRCTVWFSPSKSEVGPRQLADWIVADRLPVRFQMQLHKLLWNDEPGR

Specific function: Unknown

COG id: COG0602

COG function: function code O; Organic radical activating enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the radical SAM superfamily [H]

Homologues:

Organism=Escherichia coli, GI1789139, Length=225, Percent_Identity=28.8888888888889, Blast_Score=69, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 25364; Mature: 25364

Theoretical pI: Translated: 5.95; Mature: 5.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.5 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
3.5 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNAATVPSEIIQSPLPRLKITEIFLSLQGEAEAAGWPTVFVRLTGCPLRCVYCDTAYAFH
CCCCCCCHHHHHCCCCCCEEEHHEEECCCCCCCCCCCEEEEEECCCCEEEEEECCEEEEC
GGEWHDIDDVLAEVATHGVRHVCVTGGEPLAQKRCLVLLQKLCDAGYDVSLETSGALDVS
CCCCCCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCEEEECCCCEEEE
AVDPRVSRVVDIKTPASGEEARNRWENLLLLTARDQIKFVICSRADYEWSREIVAAHALD
ECCCHHHEEEEECCCCCCHHHHHHHHHEEEEEECCCEEEEEECCCCCHHHHHHHHHHHCC
RRCTVWFSPSKSEVGPRQLADWIVADRLPVRFQMQLHKLLWNDEPGR
CEEEEEECCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MNAATVPSEIIQSPLPRLKITEIFLSLQGEAEAAGWPTVFVRLTGCPLRCVYCDTAYAFH
CCCCCCCHHHHHCCCCCCEEEHHEEECCCCCCCCCCCEEEEEECCCCEEEEEECCEEEEC
GGEWHDIDDVLAEVATHGVRHVCVTGGEPLAQKRCLVLLQKLCDAGYDVSLETSGALDVS
CCCCCCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCEEEECCCCEEEE
AVDPRVSRVVDIKTPASGEEARNRWENLLLLTARDQIKFVICSRADYEWSREIVAAHALD
ECCCHHHEEEEECCCCCCHHHHHHHHHEEEEEECCCEEEEEECCCCCHHHHHHHHHHHCC
RRCTVWFSPSKSEVGPRQLADWIVADRLPVRFQMQLHKLLWNDEPGR
CEEEEEECCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]