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The map label for this gene is ybgF [C]

Identifier: 84623211

GI number: 84623211

Start: 1710172

End: 1710990

Strand: Direct

Name: ybgF [C]

Synonym: XOO_1554

Alternate gene names: 84623211

Gene position: 1710172-1710990 (Clockwise)

Preceding gene: 84623210

Following gene: 84623212

Centisome position: 34.62

GC content: 62.15

Gene sequence:

>819_bases
ATGCGCTTTCGAGTGACATCCCTGTTCGTCGCGGCGGCCCTTGTGGTCGCCGCGCCGGCATACGCACAGCGAGCCAGTCT
CGCTGATCGTGTGGCCGTGCTCGAGCAGCAGCAGGCCAATAGTCAGGCCAACAACGATCTCCTCAATCAGCTGCAGCAGG
CGCGTTCGGACCTGCAGGCATTGCGGTCGACCGTCGAACAGCTTCAGCACGACAATGAGCAACTCAAGCAGCAGTCCAAG
GACCAATATCTGGACCTGGATGGACGCTTGAACCGGTTGGAAGGCGCAGGTGGCGCAACGCCGTCATTGCCCCCAGCGAC
CGGCAGCGTGACTCCGGCCCCGGCACCCGCTGCGCGGCCCCCAACGGCGGCAACTTCCGAGAAGCCGCCTACCGTCCATG
GCGACCCAGGCACCTTGGCCGTCAGCAACGACGAACGTACTGCCTACAACGTGGCCTTCGATGCGTTGAAGAACGGCAAG
TACGACGATGCCTCTCAGCTGTTCCTGAGCTTTCTGGAGCTCTATCCCAACGGCGTCTATACCCCCAATGCCTTGTATTG
GCTGGGTGAGAGTTATTACGCCACCCGCAATTTCCAGCTTGCCGAGGCGCAGTTTCGCGATCTCGTCAGCCGTTATCCCA
CACACGACAAGGCCGCTGGTGGCCTGTTGAAGCTCGGCCTTTCGCAGTACGGTGAAGGCAAGAACAACGAAGCCCAGCGG
ACCTTGCAGCATGTCGCCTCGCAGTATCCCGGCTCCGATGCGGCACGCGTCGCTCAGGAACGCCTGCAGTCCATCCGCCT
CGGCCAGCAACTGCGCTGA

Upstream 100 bases:

>100_bases
CAGCTACGGCGAAGAGCGTCCGGTCTGCACCGAGTCGAACGAGTCCTGCTGGTCGCAGAACCGCAGGGTCGAAATCGTGT
ACACGGCTCAGTAAGAAGCG

Downstream 100 bases:

>100_bases
GCCCGCGCGTCTGTGCTTGTCGGCACGGCGCATACTTTGCCCATGAACGCTGCCACCGTCCCTAGCGAGATTATTCAATC
GCCCTTGCCGCGATTGAAGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 272; Mature: 272

Protein sequence:

>272_residues
MRFRVTSLFVAAALVVAAPAYAQRASLADRVAVLEQQQANSQANNDLLNQLQQARSDLQALRSTVEQLQHDNEQLKQQSK
DQYLDLDGRLNRLEGAGGATPSLPPATGSVTPAPAPAARPPTAATSEKPPTVHGDPGTLAVSNDERTAYNVAFDALKNGK
YDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNNEAQR
TLQHVASQYPGSDAARVAQERLQSIRLGQQLR

Sequences:

>Translated_272_residues
MRFRVTSLFVAAALVVAAPAYAQRASLADRVAVLEQQQANSQANNDLLNQLQQARSDLQALRSTVEQLQHDNEQLKQQSK
DQYLDLDGRLNRLEGAGGATPSLPPATGSVTPAPAPAARPPTAATSEKPPTVHGDPGTLAVSNDERTAYNVAFDALKNGK
YDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNNEAQR
TLQHVASQYPGSDAARVAQERLQSIRLGQQLR
>Mature_272_residues
MRFRVTSLFVAAALVVAAPAYAQRASLADRVAVLEQQQANSQANNDLLNQLQQARSDLQALRSTVEQLQHDNEQLKQQSK
DQYLDLDGRLNRLEGAGGATPSLPPATGSVTPAPAPAARPPTAATSEKPPTVHGDPGTLAVSNDERTAYNVAFDALKNGK
YDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNNEAQR
TLQHVASQYPGSDAARVAQERLQSIRLGQQLR

Specific function: Unknown

COG id: COG1729

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli ybgF [H]

Homologues:

Organism=Escherichia coli, GI1786963, Length=242, Percent_Identity=30.9917355371901, Blast_Score=92, Evalue=3e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014162
- InterPro:   IPR013026
- InterPro:   IPR011990 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29640; Mature: 29640

Theoretical pI: Translated: 6.97; Mature: 6.97

Prosite motif: PS50005 TPR L=RR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.4 %Met     (Translated Protein)
0.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
0.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRFRVTSLFVAAALVVAAPAYAQRASLADRVAVLEQQQANSQANNDLLNQLQQARSDLQA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
LRSTVEQLQHDNEQLKQQSKDQYLDLDGRLNRLEGAGGATPSLPPATGSVTPAPAPAARP
HHHHHHHHHCCHHHHHHHHHHCEECCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
PTAATSEKPPTVHGDPGTLAVSNDERTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVY
CCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCC
TPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNNEAQR
CCCHHEEECCCHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHH
TLQHVASQYPGSDAARVAQERLQSIRLGQQLR
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MRFRVTSLFVAAALVVAAPAYAQRASLADRVAVLEQQQANSQANNDLLNQLQQARSDLQA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
LRSTVEQLQHDNEQLKQQSKDQYLDLDGRLNRLEGAGGATPSLPPATGSVTPAPAPAARP
HHHHHHHHHCCHHHHHHHHHHCEECCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
PTAATSEKPPTVHGDPGTLAVSNDERTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVY
CCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCC
TPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNNEAQR
CCCHHEEECCCHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHH
TLQHVASQYPGSDAARVAQERLQSIRLGQQLR
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12534463 [H]