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The map label for this gene is yagA [C]

Identifier: 84621991

GI number: 84621991

Start: 362659

End: 363204

Strand: Direct

Name: yagA [C]

Synonym: XOO_0334

Alternate gene names: 84621991

Gene position: 362659-363204 (Clockwise)

Preceding gene: 84621990

Following gene: 84621992

Centisome position: 7.34

GC content: 62.27

Gene sequence:

>546_bases
GTGCCGGTAGGCGAGCGTGCACCGTTGCTGCGGCCCACCAAGGCCAACCCGGTGTGGTCGATGGACGTCGTGTTCGACCG
CACCGCCGAAGGTCGGGCGATCAAGTCTCTGGTGATCGTGGACGACGCGACACACCAGGCAGTCGTCATCGACGTGGAAC
GCGCCATCTCCGGCCACGGGGTAGCACGCGTGCTGGATCGGTTGGCACACAGTCGTGGCCTGCCGAAGATGATCCGCACG
GACAATGGCAAGGAGTTCTGTGACAAGGCCATGGTCGCCTGGGCGCATGCCAATCGTGTGCAGCTACGCCAGATCCAGCC
TGGCAAGCCGAACCAGAATGCCTACGTCGAATCCTTCAACGGCCGGCTACGCGACGAATGCCTCAACGAACACTGGTTCC
CAACGCTGCTGCATGCGCGCACCGAGATCGAACGCTGGCGCCGCGAATACAACGAACACCGCCCCAAAAAAACAATCGGC
GGAATGACGCCGGCGGCCTATGCCCAGCAGTTGGCCAATAGCGAGATCATCAACCCCGGACTCTAA

Upstream 100 bases:

>100_bases
CTCTCAAGCTGCGGGCAGGAAGGGCGTCTCGTGAACTATAAGCGGGTAGAGCGGCTGTATTGCGAGCAGCAGCTGCAGGT
CCGCCGCCGCACGTAAAAAG

Downstream 100 bases:

>100_bases
TTCTACTGTGTTACTAAATACGAATCCGTTGGTACGGTGAGACCCCGCAACACGGGCAGTGTGGGAGGCTTCTGGCGATA
AGCCTAGTCAGTCCGAAGGC

Product: ISXoo3 transposase orfB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 181; Mature: 180

Protein sequence:

>181_residues
MPVGERAPLLRPTKANPVWSMDVVFDRTAEGRAIKSLVIVDDATHQAVVIDVERAISGHGVARVLDRLAHSRGLPKMIRT
DNGKEFCDKAMVAWAHANRVQLRQIQPGKPNQNAYVESFNGRLRDECLNEHWFPTLLHARTEIERWRREYNEHRPKKTIG
GMTPAAYAQQLANSEIINPGL

Sequences:

>Translated_181_residues
MPVGERAPLLRPTKANPVWSMDVVFDRTAEGRAIKSLVIVDDATHQAVVIDVERAISGHGVARVLDRLAHSRGLPKMIRT
DNGKEFCDKAMVAWAHANRVQLRQIQPGKPNQNAYVESFNGRLRDECLNEHWFPTLLHARTEIERWRREYNEHRPKKTIG
GMTPAAYAQQLANSEIINPGL
>Mature_180_residues
PVGERAPLLRPTKANPVWSMDVVFDRTAEGRAIKSLVIVDDATHQAVVIDVERAISGHGVARVLDRLAHSRGLPKMIRTD
NGKEFCDKAMVAWAHANRVQLRQIQPGKPNQNAYVESFNGRLRDECLNEHWFPTLLHARTEIERWRREYNEHRPKKTIGG
MTPAAYAQQLANSEIINPGL

Specific function: Unknown

COG id: COG2801

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001584
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 20492; Mature: 20360

Theoretical pI: Translated: 9.91; Mature: 9.91

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPVGERAPLLRPTKANPVWSMDVVFDRTAEGRAIKSLVIVDDATHQAVVIDVERAISGHG
CCCCCCCCCCCCCCCCCCEEEHEEEECCCCCCEEEEEEEEECCCCCEEEEEHHHHHCCCC
VARVLDRLAHSRGLPKMIRTDNGKEFCDKAMVAWAHANRVQLRQIQPGKPNQNAYVESFN
HHHHHHHHHHHCCCCHHHHCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHC
GRLRDECLNEHWFPTLLHARTEIERWRREYNEHRPKKTIGGMTPAAYAQQLANSEIINPG
CHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHCCCCCCCC
L
C
>Mature Secondary Structure 
PVGERAPLLRPTKANPVWSMDVVFDRTAEGRAIKSLVIVDDATHQAVVIDVERAISGHG
CCCCCCCCCCCCCCCCCEEEHEEEECCCCCCEEEEEEEEECCCCCEEEEEHHHHHCCCC
VARVLDRLAHSRGLPKMIRTDNGKEFCDKAMVAWAHANRVQLRQIQPGKPNQNAYVESFN
HHHHHHHHHHHCCCCHHHHCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHC
GRLRDECLNEHWFPTLLHARTEIERWRREYNEHRPKKTIGGMTPAAYAQQLANSEIINPG
CHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHCCCCCCCC
L
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2152895 [H]