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The map label for this gene is IS1086 [H]

Identifier: 84621817

GI number: 84621817

Start: 169760

End: 170209

Strand: Direct

Name: IS1086 [H]

Synonym: XOO_0160

Alternate gene names: 84621817

Gene position: 169760-170209 (Clockwise)

Preceding gene: 84621816

Following gene: 84621819

Centisome position: 3.44

GC content: 59.56

Gene sequence:

>450_bases
ATGCATATGTCAAAAAGCTATCAACACCTCAGTGCGGAAGAGCGCGCAATGCTCCAGATCGAGAGGGCGCGCGGTCAAAG
TGTGCGCGCGATTTCCAGGATTTTAGGCAGGAGCCCGTCGACATTGAGTCGGGAATTGGCCAAGCAGGACAGTACCACCT
ATTGCGCGCGCAGTGCGGGCAAGCGCTACCGCGCACGGCGTCAGCTTAGCGTCCGGCAGCGGCGACTGACGCCAGGAACG
CCGTTATTCCAGCTGGTGCGAGATCATCTGGTGCTATGGCGCTGGTCGCCCCAGCAGATTGCTGCCAAGCTCTCGCATAT
GTATCCGGATGATCCTGCCCAGCGCGTCAGCCACGAAACCATTTACGCTAACATCTACGCGCATCCGCGTGGGGGCTTGA
AGAAGGAACTGGTCCAGGCCCTGGGTCAGCACAAGCCCAAACGCGGATGA

Upstream 100 bases:

>100_bases
GGACAAGTCGTGGTGTCTGCTGCGCGCAGCCGTGCCGATCGGTGGACGCACACTGCTTAGACTCAATCTCCAAGTGCAAC
ACCCTCTCAGCAGTTAGGGT

Downstream 100 bases:

>100_bases
CGGCGTACAACGGCGGCCACACGCAGCTGGGTGCCGGAGGAGTTGCGGATTGTGCATCGCCCCGAAGAAGTGCAGACGCG
CTTGGTCCCAGGTCATTGGG

Product: ISXoo15 transposase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 149; Mature: 149

Protein sequence:

>149_residues
MHMSKSYQHLSAEERAMLQIERARGQSVRAISRILGRSPSTLSRELAKQDSTTYCARSAGKRYRARRQLSVRQRRLTPGT
PLFQLVRDHLVLWRWSPQQIAAKLSHMYPDDPAQRVSHETIYANIYAHPRGGLKKELVQALGQHKPKRG

Sequences:

>Translated_149_residues
MHMSKSYQHLSAEERAMLQIERARGQSVRAISRILGRSPSTLSRELAKQDSTTYCARSAGKRYRARRQLSVRQRRLTPGT
PLFQLVRDHLVLWRWSPQQIAAKLSHMYPDDPAQRVSHETIYANIYAHPRGGLKKELVQALGQHKPKRG
>Mature_149_residues
MHMSKSYQHLSAEERAMLQIERARGQSVRAISRILGRSPSTLSRELAKQDSTTYCARSAGKRYRARRQLSVRQRRLTPGT
PLFQLVRDHLVLWRWSPQQIAAKLSHMYPDDPAQRVSHETIYANIYAHPRGGLKKELVQALGQHKPKRG

Specific function: Required for the transposition of the insertion element (Potential) [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001584
- InterPro:   IPR012337
- InterPro:   IPR001598 [H]

Pfam domain/function: PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 17166; Mature: 17166

Theoretical pI: Translated: 11.74; Mature: 11.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHMSKSYQHLSAEERAMLQIERARGQSVRAISRILGRSPSTLSRELAKQDSTTYCARSAG
CCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH
KRYRARRQLSVRQRRLTPGTPLFQLVRDHLVLWRWSPQQIAAKLSHMYPDDPAQRVSHET
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHH
IYANIYAHPRGGLKKELVQALGQHKPKRG
HEEEEEECCCCCHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MHMSKSYQHLSAEERAMLQIERARGQSVRAISRILGRSPSTLSRELAKQDSTTYCARSAG
CCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH
KRYRARRQLSVRQRRLTPGTPLFQLVRDHLVLWRWSPQQIAAKLSHMYPDDPAQRVSHET
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHH
IYANIYAHPRGGLKKELVQALGQHKPKRG
HEEEEEECCCCCHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1334071 [H]