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The map label for this gene is yncD [H]

Identifier: 84621675

GI number: 84621675

Start: 19738

End: 21876

Strand: Direct

Name: yncD [H]

Synonym: XOO_0018

Alternate gene names: 84621675

Gene position: 19738-21876 (Clockwise)

Preceding gene: 84621668

Following gene: 84621676

Centisome position: 0.4

GC content: 68.12

Gene sequence:

>2139_bases
ATGTCCAGACTCACCGTGTTGGCCGCCGCCTGCGGCCTGTTCGCCACGAGCGCCACGCCGCCCGTGCTGGCCGCCGATCC
GGCGCCACCCGCATCCACACCGATCCAGCGCTTGCCCGCCGTGCAGGTGGACGCTGCGCGCGTGCGCGGGGTGGACGACT
TCGATCTGCCGGCCTCGTTCACCGTGGTGTCGGCCGACGACGACAACCGCCGCGGCGCGCAGGTCTCCGAGCTGCTGGAC
GGTATCCCCGGGCTGGTGGCGCGCGACCGCCAGAACTATGCGCAGGACACGCAGCTGTCGATCCGCGGCTTCGGCGCGCG
CTCCACCTTCGGCGTGCGCGGCGTGAGGTTGCTGGTCGACGGCATTCCGGCCAGCATGCCCGACGGCCAGGGCCAGCTGT
CGCACTTCAACGTGCTGGGCGCCGAGCGGGTGGAAGTGCTGCGCGGGCCGTTTTCGGCGTTGTACGGCAACTCCTCCGGC
GGCGTGCTGCAGCTGTGGAGCGCCGACGGCGCCCCAAACGACCCGTGGCGGCTGCGTGCCACCTATGGCAGCAACGCCAC
CGTCGACGTGGGCACGCAGTTGCTCGGCCAGCAGGGCGCGGTGCACTACAACCTGGCCGCTAATCATTTCGAAACCGATG
GCGTCCGCGACCACAGCCGCGCCAAGCGCGACTCGGTCAATGCCAAGCTCGGCTTCGATCTGGCCGAAGGCAGCCGGCTG
GACCTGGTGCTCAATTATCTGGACGCGCCGGATGCCCAAGACCCGCTCGGCCTCACCCGCGCCCAGTTCAATGCCGACCC
GGCGCACGCCACTTCCGTGGCGACCCAGTTCAATACCCGCAAGTCGGTGCGCCAGTCGCAGGCCGGCGCCATCTTCACCC
AGCAATTCGACAACCAGGCACTGCGCCTGATGGCCTATGACGGCCAGCGCAGCGTGGAGCAGTTCCTGGCGATTCCGCTG
GCGGTGCAGCGCAACCCGCTGCATTCGGGCGGGGTGATCGATCTGGACAGCAATTACGAAGGTGCCGACGCGCGCTGGGC
CTGGCAGGGCGAAGCGCTGGGCCGGCCGTTGCAGCTGACCGTGGGCACCAATGTCGACCGTCAGCGCCAGCACCGCACCG
GTTACGAAAACTTCGTCGGCGACATACTGGGCGTCAAGGGCGCATTGCGCCGCAACCAGCGCGATGAGGTCCAGAACGTA
GACCAGTTCGCGCAGCTGTGGTGGCAATGGAGCGAGCGCTGGTCGGCGCTGCTGGGCGTGCGCCATAGCGACGTGCGTTT
CGCGTCGGACGACCACTACACCGTCGGCCGCAACCCCGACGACAGCGGCCAGCGCGAGTATTCGGCGACCACGCCGGTGG
CCGGCATCGTGTTCCGCGCCGACGAGGATCTGCGCTTTTACGCTTCGCTCGGACGCGGCTTCGAAACGCCTACCTTCAAC
GAACTGGGTTACCGCAGCGATGGTGGTGCCGGCCTGGCGCTGGACCTGGGTGCGGCGACAAGCCGCAACGTTGAGGTCGG
CAGCAAGTGGCGTGCGCAAAGCGGCGCAGCGGTGGAGTTTGCGTTGTTCCGCGCCGACACCGACGACGAACTGGCGGTGG
CCAGCAACACGAATGGGCGCAGCACCTACCGCAACATCCGCGCGACGCGGCGCCAGGGCGCAGAGCTCAGCTGGCATCAG
CCGATTGGCGCCACCCAGCAGCTGCAGCTGGCCTACACCTTTGTCGATGCCACCGTGCGCGATGGCTACCTCACCTGTGC
CAGCAGCGGTTGCGCCACGCCCACGGTACCGGTAGCCAACGGTGCGCGCCTGCCCGGCGTGCCGCGTCAGCAGTTGTTTG
CGCGTTGGCAATGGCAGCCGGCGCAGTGGCGATTCGCCGCCGAATCGGTGGCCTCCGGCGCCACCGTGGTCAATGACTTG
GCCACCGAGCGTGCGCCCGGCGACGCGCTGGTCAATCTGGAAGCCTCCCGGCGCTGGACCACCACACTTGGTGCATTGCG
CACCTTCGCACGCGTCGACAACGTGTTGGACCGCCAGTACGTGGGCTCGGTCATCGTCAACGATGGCAACGGCCGCTATT
ACGAGCCAGGACCGGATCGTACCTATACGGTGGGGCTGCAGTGGGATTTTGGTGGGTGA

Upstream 100 bases:

>100_bases
GGGCCAAACTACTTCATCGTAGCAGCCCATGGCCGGCGTAGCATGCTTGGTTCCGTACGCAACAATGCGCTCACAGTACG
TAATGAGGGACACTACGCTC

Downstream 100 bases:

>100_bases
GCAAGCACCCCACGCCCGCACGCCACCGCGCACCAGGCGCTTTGTAGGAGCACCCCGGGCGCGATGAGAGCCGGCTCGAT
AACGCCAAACCACCACATCA

Product: iron transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 712; Mature: 711

Protein sequence:

>712_residues
MSRLTVLAAACGLFATSATPPVLAADPAPPASTPIQRLPAVQVDAARVRGVDDFDLPASFTVVSADDDNRRGAQVSELLD
GIPGLVARDRQNYAQDTQLSIRGFGARSTFGVRGVRLLVDGIPASMPDGQGQLSHFNVLGAERVEVLRGPFSALYGNSSG
GVLQLWSADGAPNDPWRLRATYGSNATVDVGTQLLGQQGAVHYNLAANHFETDGVRDHSRAKRDSVNAKLGFDLAEGSRL
DLVLNYLDAPDAQDPLGLTRAQFNADPAHATSVATQFNTRKSVRQSQAGAIFTQQFDNQALRLMAYDGQRSVEQFLAIPL
AVQRNPLHSGGVIDLDSNYEGADARWAWQGEALGRPLQLTVGTNVDRQRQHRTGYENFVGDILGVKGALRRNQRDEVQNV
DQFAQLWWQWSERWSALLGVRHSDVRFASDDHYTVGRNPDDSGQREYSATTPVAGIVFRADEDLRFYASLGRGFETPTFN
ELGYRSDGGAGLALDLGAATSRNVEVGSKWRAQSGAAVEFALFRADTDDELAVASNTNGRSTYRNIRATRRQGAELSWHQ
PIGATQQLQLAYTFVDATVRDGYLTCASSGCATPTVPVANGARLPGVPRQQLFARWQWQPAQWRFAAESVASGATVVNDL
ATERAPGDALVNLEASRRWTTTLGALRTFARVDNVLDRQYVGSVIVNDGNGRYYEPGPDRTYTVGLQWDFGG

Sequences:

>Translated_712_residues
MSRLTVLAAACGLFATSATPPVLAADPAPPASTPIQRLPAVQVDAARVRGVDDFDLPASFTVVSADDDNRRGAQVSELLD
GIPGLVARDRQNYAQDTQLSIRGFGARSTFGVRGVRLLVDGIPASMPDGQGQLSHFNVLGAERVEVLRGPFSALYGNSSG
GVLQLWSADGAPNDPWRLRATYGSNATVDVGTQLLGQQGAVHYNLAANHFETDGVRDHSRAKRDSVNAKLGFDLAEGSRL
DLVLNYLDAPDAQDPLGLTRAQFNADPAHATSVATQFNTRKSVRQSQAGAIFTQQFDNQALRLMAYDGQRSVEQFLAIPL
AVQRNPLHSGGVIDLDSNYEGADARWAWQGEALGRPLQLTVGTNVDRQRQHRTGYENFVGDILGVKGALRRNQRDEVQNV
DQFAQLWWQWSERWSALLGVRHSDVRFASDDHYTVGRNPDDSGQREYSATTPVAGIVFRADEDLRFYASLGRGFETPTFN
ELGYRSDGGAGLALDLGAATSRNVEVGSKWRAQSGAAVEFALFRADTDDELAVASNTNGRSTYRNIRATRRQGAELSWHQ
PIGATQQLQLAYTFVDATVRDGYLTCASSGCATPTVPVANGARLPGVPRQQLFARWQWQPAQWRFAAESVASGATVVNDL
ATERAPGDALVNLEASRRWTTTLGALRTFARVDNVLDRQYVGSVIVNDGNGRYYEPGPDRTYTVGLQWDFGG
>Mature_711_residues
SRLTVLAAACGLFATSATPPVLAADPAPPASTPIQRLPAVQVDAARVRGVDDFDLPASFTVVSADDDNRRGAQVSELLDG
IPGLVARDRQNYAQDTQLSIRGFGARSTFGVRGVRLLVDGIPASMPDGQGQLSHFNVLGAERVEVLRGPFSALYGNSSGG
VLQLWSADGAPNDPWRLRATYGSNATVDVGTQLLGQQGAVHYNLAANHFETDGVRDHSRAKRDSVNAKLGFDLAEGSRLD
LVLNYLDAPDAQDPLGLTRAQFNADPAHATSVATQFNTRKSVRQSQAGAIFTQQFDNQALRLMAYDGQRSVEQFLAIPLA
VQRNPLHSGGVIDLDSNYEGADARWAWQGEALGRPLQLTVGTNVDRQRQHRTGYENFVGDILGVKGALRRNQRDEVQNVD
QFAQLWWQWSERWSALLGVRHSDVRFASDDHYTVGRNPDDSGQREYSATTPVAGIVFRADEDLRFYASLGRGFETPTFNE
LGYRSDGGAGLALDLGAATSRNVEVGSKWRAQSGAAVEFALFRADTDDELAVASNTNGRSTYRNIRATRRQGAELSWHQP
IGATQQLQLAYTFVDATVRDGYLTCASSGCATPTVPVANGARLPGVPRQQLFARWQWQPAQWRFAAESVASGATVVNDLA
TERAPGDALVNLEASRRWTTTLGALRTFARVDNVLDRQYVGSVIVNDGNGRYYEPGPDRTYTVGLQWDFGG

Specific function: Probable receptor, tonB-dependent [H]

COG id: COG1629

COG function: function code P; Outer membrane receptor proteins, mostly Fe transport

Gene ontology:

Cell location: Cell outer membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tonB-dependent receptor family [H]

Homologues:

Organism=Escherichia coli, GI1787723, Length=726, Percent_Identity=41.7355371900826, Blast_Score=512, Evalue=1e-146,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012910
- InterPro:   IPR000531 [H]

Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]

EC number: NA

Molecular weight: Translated: 77359; Mature: 77228

Theoretical pI: Translated: 5.88; Mature: 5.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
0.4 %Met     (Translated Protein)
0.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.3 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRLTVLAAACGLFATSATPPVLAADPAPPASTPIQRLPAVQVDAARVRGVDDFDLPASF
CCHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCHHHCCCCEECHHHHCCCCCCCCCCEE
TVVSADDDNRRGAQVSELLDGIPGLVARDRQNYAQDTQLSIRGFGARSTFGVRGVRLLVD
EEEECCCCCCCCCHHHHHHCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCEEEEEEE
GIPASMPDGQGQLSHFNVLGAERVEVLRGPFSALYGNSSGGVLQLWSADGAPNDPWRLRA
CCCCCCCCCCCCCEEEEECCHHHHHHHHCCHHHHCCCCCCCEEEEEECCCCCCCCEEEEE
TYGSNATVDVGTQLLGQQGAVHYNLAANHFETDGVRDHSRAKRDSVNAKLGFDLAEGSRL
ECCCCCEEEHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHCCCCEECEEECCCCCE
DLVLNYLDAPDAQDPLGLTRAQFNADPAHATSVATQFNTRKSVRQSQAGAIFTQQFDNQA
EEEEEECCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEHHHHCCCE
LRLMAYDGQRSVEQFLAIPLAVQRNPLHSGGVIDLDSNYEGADARWAWQGEALGRPLQLT
EEEEEECCHHHHHHHHHCCCEEECCCCCCCCEEEECCCCCCCCCEEEECCHHCCCCEEEE
VGTNVDRQRQHRTGYENFVGDILGVKGALRRNQRDEVQNVDQFAQLWWQWSERWSALLGV
ECCCCHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
RHSDVRFASDDHYTVGRNPDDSGQREYSATTPVAGIVFRADEDLRFYASLGRGFETPTFN
CCCCEEEECCCCEECCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHCCCCCCCCCH
ELGYRSDGGAGLALDLGAATSRNVEVGSKWRAQSGAAVEFALFRADTDDELAVASNTNGR
HCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCEEEEECCCCH
STYRNIRATRRQGAELSWHQPIGATQQLQLAYTFVDATVRDGYLTCASSGCATPTVPVAN
HHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEEHHHCCCEEEECCCCCCCCCCCCCC
GARLPGVPRQQLFARWQWQPAQWRFAAESVASGATVVNDLATERAPGDALVNLEASRRWT
CCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHCCCCCCEEEEEECCCCHH
TTLGALRTFARVDNVLDRQYVGSVIVNDGNGRYYEPGPDRTYTVGLQWDFGG
HHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCEECCCCCCEEEEEEEECCCC
>Mature Secondary Structure 
SRLTVLAAACGLFATSATPPVLAADPAPPASTPIQRLPAVQVDAARVRGVDDFDLPASF
CHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCHHHCCCCEECHHHHCCCCCCCCCCEE
TVVSADDDNRRGAQVSELLDGIPGLVARDRQNYAQDTQLSIRGFGARSTFGVRGVRLLVD
EEEECCCCCCCCCHHHHHHCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCEEEEEEE
GIPASMPDGQGQLSHFNVLGAERVEVLRGPFSALYGNSSGGVLQLWSADGAPNDPWRLRA
CCCCCCCCCCCCCEEEEECCHHHHHHHHCCHHHHCCCCCCCEEEEEECCCCCCCCEEEEE
TYGSNATVDVGTQLLGQQGAVHYNLAANHFETDGVRDHSRAKRDSVNAKLGFDLAEGSRL
ECCCCCEEEHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHCCCCEECEEECCCCCE
DLVLNYLDAPDAQDPLGLTRAQFNADPAHATSVATQFNTRKSVRQSQAGAIFTQQFDNQA
EEEEEECCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEHHHHCCCE
LRLMAYDGQRSVEQFLAIPLAVQRNPLHSGGVIDLDSNYEGADARWAWQGEALGRPLQLT
EEEEEECCHHHHHHHHHCCCEEECCCCCCCCEEEECCCCCCCCCEEEECCHHCCCCEEEE
VGTNVDRQRQHRTGYENFVGDILGVKGALRRNQRDEVQNVDQFAQLWWQWSERWSALLGV
ECCCCHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
RHSDVRFASDDHYTVGRNPDDSGQREYSATTPVAGIVFRADEDLRFYASLGRGFETPTFN
CCCCEEEECCCCEECCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHCCCCCCCCCH
ELGYRSDGGAGLALDLGAATSRNVEVGSKWRAQSGAAVEFALFRADTDDELAVASNTNGR
HCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCEEEEECCCCH
STYRNIRATRRQGAELSWHQPIGATQQLQLAYTFVDATVRDGYLTCASSGCATPTVPVAN
HHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEEHHHCCCEEEECCCCCCCCCCCCCC
GARLPGVPRQQLFARWQWQPAQWRFAAESVASGATVVNDLATERAPGDALVNLEASRRWT
CCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHCCCCCCEEEEEECCCCHH
TTLGALRTFARVDNVLDRQYVGSVIVNDGNGRYYEPGPDRTYTVGLQWDFGG
HHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCEECCCCCCEEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]