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The map label for this gene is exbD1 [H]

Identifier: 84621667

GI number: 84621667

Start: 12748

End: 13170

Strand: Direct

Name: exbD1 [H]

Synonym: XOO_0010

Alternate gene names: 84621667

Gene position: 12748-13170 (Clockwise)

Preceding gene: 84621666

Following gene: 84621668

Centisome position: 0.26

GC content: 59.34

Gene sequence:

>423_bases
ATGGCCTTCAGTAGTGGAAACAGCGGTGGCCCGATGGCCGACATCAATGTGACGCCCCTCGTGGACGTGATGCTGGTGCT
GCTGATCATCTTCATCATTACGGCGCCGCTGATGTCCCATAAGGTCAAGGTGGAGCTGCCGCAGGCCAACTTGATCCAGA
AGGAAGATGCGGAGAAACGCGCCGCGCCGATCACTCTGGCCGTCAAGGAAGATGGGTCGCTGTACTGGAACGACGAGCCG
ATTTCCAAGGAAGCCTTGGAGTCGCGCCTGTCCACCGCAGCACAGCAGACCCCGCAGCCGCCGCTCAATTTGCGTGGCGA
CCGCACGACCAAGATGCGTACGATCAACGAGATCACCAAGATCGCGCAGGGTCAGGGCATGCTGGACGTCGGTTTCGTTG
CAACCAAAGTGAAGGGGCAGTAA

Upstream 100 bases:

>100_bases
ACCTTCGCCCACGACCTGCACGACTTCTTCGCCACCGGTTCGCGCGTTCGCTAATCCGGTTGTAAAGAACGACTTCGCAA
CGATTTAGACGGAGCCCGTT

Downstream 100 bases:

>100_bases
GCCATGGCATTTAGTACTGGTGGAAGCCGTGGACCGATGGCCGACATCAACGTCACGCCCCTCGTGGACGTGATGCTGGT
GCTGCTGATCATCTTCATCG

Product: biopolymer transport ExbD1 protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 140; Mature: 139

Protein sequence:

>140_residues
MAFSSGNSGGPMADINVTPLVDVMLVLLIIFIITAPLMSHKVKVELPQANLIQKEDAEKRAAPITLAVKEDGSLYWNDEP
ISKEALESRLSTAAQQTPQPPLNLRGDRTTKMRTINEITKIAQGQGMLDVGFVATKVKGQ

Sequences:

>Translated_140_residues
MAFSSGNSGGPMADINVTPLVDVMLVLLIIFIITAPLMSHKVKVELPQANLIQKEDAEKRAAPITLAVKEDGSLYWNDEP
ISKEALESRLSTAAQQTPQPPLNLRGDRTTKMRTINEITKIAQGQGMLDVGFVATKVKGQ
>Mature_139_residues
AFSSGNSGGPMADINVTPLVDVMLVLLIIFIITAPLMSHKVKVELPQANLIQKEDAEKRAAPITLAVKEDGSLYWNDEPI
SKEALESRLSTAAQQTPQPPLNLRGDRTTKMRTINEITKIAQGQGMLDVGFVATKVKGQ

Specific function: Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates [H]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

Organism=Escherichia coli, GI1789380, Length=127, Percent_Identity=35.4330708661417, Blast_Score=85, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 15184; Mature: 15053

Theoretical pI: Translated: 7.54; Mature: 7.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFSSGNSGGPMADINVTPLVDVMLVLLIIFIITAPLMSHKVKVELPQANLIQKEDAEKR
CCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCHHHH
AAPITLAVKEDGSLYWNDEPISKEALESRLSTAAQQTPQPPLNLRGDRTTKMRTINEITK
CCCEEEEEECCCCEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH
IAQGQGMLDVGFVATKVKGQ
HHCCCCCEEECEEEEECCCC
>Mature Secondary Structure 
AFSSGNSGGPMADINVTPLVDVMLVLLIIFIITAPLMSHKVKVELPQANLIQKEDAEKR
CCCCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCHHHH
AAPITLAVKEDGSLYWNDEPISKEALESRLSTAAQQTPQPPLNLRGDRTTKMRTINEITK
CCCEEEEEECCCCEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH
IAQGQGMLDVGFVATKVKGQ
HHCCCCCEEECEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9371459 [H]