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The map label for this gene is dapD [H]

Identifier: 162319802

GI number: 162319802

Start: 2069260

End: 2070117

Strand: Direct

Name: dapD [H]

Synonym: XOO_1876

Alternate gene names: 162319802

Gene position: 2069260-2070117 (Clockwise)

Preceding gene: 84623532

Following gene: 84623534

Centisome position: 41.89

GC content: 64.69

Gene sequence:

>858_bases
GTGCACAGCGCCGCAACGCAGGTGGGCAGCGATGAACTCAAATTCGGTATCGAAAGCGCGTTCGAACGGCGCGCCACGCT
GACCATGGACGAGATCGACGGCTCCACGCGCGCAATGGTCACGCGCGTGATCGACGGCCTGGAAAGCGGCGAATTTCGCG
TCGCCGAGCCGGACGGGCAGGGCGGCTGGGCCGTCAACGCGTGGTTGAAAAAAGCCGTGCTGCTGTATTTCCGCGTCAAC
GAGATGGCGGTGATCGATGCACAGCCGGCGCCGTTCTGGGACAAGGTGGAATCGCGCTTTGCCGGCTTCCATGAAGCGCA
ATTCCGCAAGGCCGGCGTGCGCGTGGTGCCGGGCGCGGTGGCGCGGCGCGGCAGTTACTTCGGCAAGGACGTGGTGCTGA
TGCCGAGCTTCACCAACATCGGTGCGTATGTCGGCGAAGGCACCATGGTCGACACCTGGGCCACGGTGGGTTCGTGCGCG
CAGATCGGCAAGCATTGCCATCTGTCCGGCGGCGCCGGCATCGGCGGCGTGCTCGAACCGCTGCAGGCCAGTCCCACCAT
CATCGAAGATCACTGCTTCATCGGCGCACGTTCGGAAGTGGTGGAGGGTGTGGTCATCGGCCACCACAGCGTGATCGGCA
TGGGCGTGTTCATCGGCCAGAGCACGCGCATCTACAACCGCGCCACCGGCGAGATTTCCTATGGATACGTGCCGCCGTAC
AGCGTGGTGGTGTCCGGCCAGCTGCCCTCCAAAGACGGCTCGCACTCGCTGTATTGCGCGGTGATCGTCAAGCAGGTCGA
TGCCAGGACGCGCAGCAAGACCAGCGTCAACGAGTTGCTGCGCGGTCTGGCCGATTGA

Upstream 100 bases:

>100_bases
TACTGCACCGCGCGTGGCCAAGCAGCCGACCAAGGTGGTTTCTGCACCGGCCGCAGAGAAAGCTGCTGCGGCAAAGAAAC
TGCCGATTGCCGAGCAGGCC

Downstream 100 bases:

>100_bases
GTGCCACGCAGCCCGTCGGCGCCATGCTGTCGCGTTCGCCCAGTGGCTGGATCCGTTGGCGCCTCCCGGCCCTGTGGTTG
GGATGGGTGCGGTCTACGTT

Product: 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase

Products: NA

Alternate protein names: Tetrahydrodipicolinate N-succinyltransferase; THDP succinyltransferase; THP succinyltransferase; Tetrahydropicolinate succinylase [H]

Number of amino acids: Translated: 285; Mature: 285

Protein sequence:

>285_residues
MHSAATQVGSDELKFGIESAFERRATLTMDEIDGSTRAMVTRVIDGLESGEFRVAEPDGQGGWAVNAWLKKAVLLYFRVN
EMAVIDAQPAPFWDKVESRFAGFHEAQFRKAGVRVVPGAVARRGSYFGKDVVLMPSFTNIGAYVGEGTMVDTWATVGSCA
QIGKHCHLSGGAGIGGVLEPLQASPTIIEDHCFIGARSEVVEGVVIGHHSVIGMGVFIGQSTRIYNRATGEISYGYVPPY
SVVVSGQLPSKDGSHSLYCAVIVKQVDARTRSKTSVNELLRGLAD

Sequences:

>Translated_285_residues
MHSAATQVGSDELKFGIESAFERRATLTMDEIDGSTRAMVTRVIDGLESGEFRVAEPDGQGGWAVNAWLKKAVLLYFRVN
EMAVIDAQPAPFWDKVESRFAGFHEAQFRKAGVRVVPGAVARRGSYFGKDVVLMPSFTNIGAYVGEGTMVDTWATVGSCA
QIGKHCHLSGGAGIGGVLEPLQASPTIIEDHCFIGARSEVVEGVVIGHHSVIGMGVFIGQSTRIYNRATGEISYGYVPPY
SVVVSGQLPSKDGSHSLYCAVIVKQVDARTRSKTSVNELLRGLAD
>Mature_285_residues
MHSAATQVGSDELKFGIESAFERRATLTMDEIDGSTRAMVTRVIDGLESGEFRVAEPDGQGGWAVNAWLKKAVLLYFRVN
EMAVIDAQPAPFWDKVESRFAGFHEAQFRKAGVRVVPGAVARRGSYFGKDVVLMPSFTNIGAYVGEGTMVDTWATVGSCA
QIGKHCHLSGGAGIGGVLEPLQASPTIIEDHCFIGARSEVVEGVVIGHHSVIGMGVFIGQSTRIYNRATGEISYGYVPPY
SVVVSGQLPSKDGSHSLYCAVIVKQVDARTRSKTSVNELLRGLAD

Specific function: Biosynthesis of diaminopimelate and lysine from aspartate semialdehyde; fourth step. [C]

COG id: COG2171

COG function: function code E; Tetrahydrodipicolinate N-succinyltransferase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the transferase hexapeptide repeat family [H]

Homologues:

Organism=Escherichia coli, GI1786362, Length=273, Percent_Identity=64.8351648351648, Blast_Score=337, Evalue=8e-94,

Paralogues:

None

Copy number: 420 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005664
- InterPro:   IPR023180
- InterPro:   IPR011004 [H]

Pfam domain/function: NA

EC number: =2.3.1.117 [H]

Molecular weight: Translated: 30555; Mature: 30555

Theoretical pI: Translated: 6.72; Mature: 6.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHSAATQVGSDELKFGIESAFERRATLTMDEIDGSTRAMVTRVIDGLESGEFRVAEPDGQ
CCCCHHCCCCHHHHHHHHHHHHHHHEEEHHHCCCHHHHHHHHHHHCCCCCCEEEECCCCC
GGWAVNAWLKKAVLLYFRVNEMAVIDAQPAPFWDKVESRFAGFHEAQFRKAGVRVVPGAV
CCEEHHHHHHHHHEEEEEECCEEEEECCCCCHHHHHHHHHCCHHHHHHHHCCCEECCHHH
ARRGSYFGKDVVLMPSFTNIGAYVGEGTMVDTWATVGSCAQIGKHCHLSGGAGIGGVLEP
HHCCCCCCCCEEEECCCCCCCCCCCCCCEEEHHHHHHHHHHHCCEEECCCCCCCCHHHHH
LQASPTIIEDHCFIGARSEVVEGVVIGHHSVIGMGVFIGQSTRIYNRATGEISYGYVPPY
HCCCCCEEECCEEECCHHHHHCEEEECCCHHEEEEEEECCCCEEEECCCCCEEECCCCCE
SVVVSGQLPSKDGSHSLYCAVIVKQVDARTRSKTSVNELLRGLAD
EEEEECCCCCCCCCCCEEEHHHHHHHHHHHCCHHHHHHHHHHHCC
>Mature Secondary Structure
MHSAATQVGSDELKFGIESAFERRATLTMDEIDGSTRAMVTRVIDGLESGEFRVAEPDGQ
CCCCHHCCCCHHHHHHHHHHHHHHHEEEHHHCCCHHHHHHHHHHHCCCCCCEEEECCCCC
GGWAVNAWLKKAVLLYFRVNEMAVIDAQPAPFWDKVESRFAGFHEAQFRKAGVRVVPGAV
CCEEHHHHHHHHHEEEEEECCEEEEECCCCCHHHHHHHHHCCHHHHHHHHCCCEECCHHH
ARRGSYFGKDVVLMPSFTNIGAYVGEGTMVDTWATVGSCAQIGKHCHLSGGAGIGGVLEP
HHCCCCCCCCEEEECCCCCCCCCCCCCCEEEHHHHHHHHHHHCCEEECCCCCCCCHHHHH
LQASPTIIEDHCFIGARSEVVEGVVIGHHSVIGMGVFIGQSTRIYNRATGEISYGYVPPY
HCCCCCEEECCEEECCHHHHHCEEEECCCHHEEEEEEECCCCEEEECCCCCEEECCCCCE
SVVVSGQLPSKDGSHSLYCAVIVKQVDARTRSKTSVNELLRGLAD
EEEEECCCCCCCCCCCEEEHHHHHHHHHHHCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10910347 [H]