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The map label for this gene is hycF [C]

Identifier: 84490168

GI number: 84490168

Start: 1555115

End: 1555885

Strand: Direct

Name: hycF [C]

Synonym: Msp_1385

Alternate gene names: 84490168

Gene position: 1555115-1555885 (Clockwise)

Preceding gene: 84490167

Following gene: 84490174

Centisome position: 87.99

GC content: 27.63

Gene sequence:

>771_bases
ATGATAATCTATTTTTCAGCAACAGGAAACTCTCAATATGTCTCTAAAAAAATAGCAAAAGAAATAAATGAAAAAACATA
TTCAATAATAGAAAATAAAAATACACGAAAATACCATATACATATAGAAAAAGATGAAACCCTAGGTGTTGTTATTCCAA
CATACTTCTGGGGACTACCAACAATTGTAGAGGAATATCTCTCTAAACTAACTATTACATCAGAAAATAAAAATCCATAC
ATCTACATAATAACAACATATGGTACAACCCCTGGATACTCTGCAGGATATGTCAAAGAACACCTAAATATATGTGGATA
TAAAGTAAATCTACAGGCAAGTATTAAAATGGTAGATACATGGACTGTTATGTTTGATTTAACTGGTAAAGAAAAAATAA
AACAACAAACAATAGAATCAGACAAAGAAATAGATACAATCATAACACGAATTAAAAATAGAAATCAGGGAAAATATGTT
GCAAGAAAAATACCTAAATTCATATCTAACATGGCACAACTATGGTATGATAGAAGTAGAAAAACAAAAAATTTACACAT
AACAAAAACATGCACTGGATGTAAAAAATGTATAAATAACTGTCCAATAAATGCCATAAGACTAGTTAATAACAAACCCT
CTTGGCAAAAAGAATACTGTGTAATGTGTCTTAGATGTCTACATATATGTCCAACATTTTCAATACAATACAACAATAAG
ACACAAAAACATGGACAATATATAAATCCATACATTAAAAAATTAGATTAA

Upstream 100 bases:

>100_bases
TTTTATATAACTATCAAAAAATATTCAAGACTACTTCTATTAAATAAACCCACCTTTTTTATACCAACAAATAATTAAGT
ATGTAATAGGTGTATTAACT

Downstream 100 bases:

>100_bases
AAAAAAGTTTTAGTGAATAAACTCTATTCACCATGTAACTTTGCAACAGCAATTTGAGCTGCTCTCTCCATTGATGTTTC
AAATGGAATATTATGTTCTG

Product: hypothetical protein

Products: CO2; H2; oxidized ferredoxin + [C]

Alternate protein names: None

Number of amino acids: Translated: 256; Mature: 256

Protein sequence:

>256_residues
MIIYFSATGNSQYVSKKIAKEINEKTYSIIENKNTRKYHIHIEKDETLGVVIPTYFWGLPTIVEEYLSKLTITSENKNPY
IYIITTYGTTPGYSAGYVKEHLNICGYKVNLQASIKMVDTWTVMFDLTGKEKIKQQTIESDKEIDTIITRIKNRNQGKYV
ARKIPKFISNMAQLWYDRSRKTKNLHITKTCTGCKKCINNCPINAIRLVNNKPSWQKEYCVMCLRCLHICPTFSIQYNNK
TQKHGQYINPYIKKLD

Sequences:

>Translated_256_residues
MIIYFSATGNSQYVSKKIAKEINEKTYSIIENKNTRKYHIHIEKDETLGVVIPTYFWGLPTIVEEYLSKLTITSENKNPY
IYIITTYGTTPGYSAGYVKEHLNICGYKVNLQASIKMVDTWTVMFDLTGKEKIKQQTIESDKEIDTIITRIKNRNQGKYV
ARKIPKFISNMAQLWYDRSRKTKNLHITKTCTGCKKCINNCPINAIRLVNNKPSWQKEYCVMCLRCLHICPTFSIQYNNK
TQKHGQYINPYIKKLD
>Mature_256_residues
MIIYFSATGNSQYVSKKIAKEINEKTYSIIENKNTRKYHIHIEKDETLGVVIPTYFWGLPTIVEEYLSKLTITSENKNPY
IYIITTYGTTPGYSAGYVKEHLNICGYKVNLQASIKMVDTWTVMFDLTGKEKIKQQTIESDKEIDTIITRIKNRNQGKYV
ARKIPKFISNMAQLWYDRSRKTKNLHITKTCTGCKKCINNCPINAIRLVNNKPSWQKEYCVMCLRCLHICPTFSIQYNNK
TQKHGQYINPYIKKLD

Specific function: Probable Electron Transfer Protein For Hydrogenase 3 [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29854; Mature: 29854

Theoretical pI: Translated: 9.84; Mature: 9.84

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
3.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIIYFSATGNSQYVSKKIAKEINEKTYSIIENKNTRKYHIHIEKDETLGVVIPTYFWGLP
CEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCEEEEEHHHHHCCHH
TIVEEYLSKLTITSENKNPYIYIITTYGTTPGYSAGYVKEHLNICGYKVNLQASIKMVDT
HHHHHHHHHEEEEECCCCCEEEEEEECCCCCCCCCHHHHHHHHHCCEEEEEEEEEEEEEE
WTVMFDLTGKEKIKQQTIESDKEIDTIITRIKNRNQGKYVARKIPKFISNMAQLWYDRSR
EEEEEECCCHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
KTKNLHITKTCTGCKKCINNCPINAIRLVNNKPSWQKEYCVMCLRCLHICPTFSIQYNNK
CCCCEEEEECHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECCC
TQKHGQYINPYIKKLD
HHHCCCCCCHHHHHCC
>Mature Secondary Structure
MIIYFSATGNSQYVSKKIAKEINEKTYSIIENKNTRKYHIHIEKDETLGVVIPTYFWGLP
CEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCEEEEEHHHHHCCHH
TIVEEYLSKLTITSENKNPYIYIITTYGTTPGYSAGYVKEHLNICGYKVNLQASIKMVDT
HHHHHHHHHEEEEECCCCCEEEEEEECCCCCCCCCHHHHHHHHHCCEEEEEEEEEEEEEE
WTVMFDLTGKEKIKQQTIESDKEIDTIITRIKNRNQGKYVARKIPKFISNMAQLWYDRSR
EEEEEECCCHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
KTKNLHITKTCTGCKKCINNCPINAIRLVNNKPSWQKEYCVMCLRCLHICPTFSIQYNNK
CCCCEEEEECHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECCC
TQKHGQYINPYIKKLD
HHHCCCCCCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: formate; Proton; reduced ferredoxin [C]

Specific reaction: formate = CO2 + H2 Proton + reduced ferredoxin = H2 + oxidized ferredoxin [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA