Click here to switch to the map view.

The map label for this gene is 84490082

Identifier: 84490082

GI number: 84490082

Start: 1458179

End: 1458850

Strand: Direct

Name: 84490082

Synonym: Msp_1294

Alternate gene names: NA

Gene position: 1458179-1458850 (Clockwise)

Preceding gene: 84490077

Following gene: 84490083

Centisome position: 82.5

GC content: 25.89

Gene sequence:

>672_bases
ATGGACTTTAATATATTTACATTAGTTGGAGAGATTATTGTATTAATTGCTATAATACTTATATTTCTAATTAGTATCAC
ATTCATTCTAGGAAACTATACCTTAAATAATGATAAATTAATGTTTCCAAAATTATTATTACTTGCACTTAATCTAACAT
ATCAACCAACAAAGAATATTATGAAATTCTTTAAATGTGATGAATTATTTGTTGATAGAGTTAGTATAAATCTTAGAAAT
AGATTAAATATAAATTCTTTTAAAAAGTTAAATGCAAAGGATCTTATAGTTATTCTACCACATTGTCTACGTGCTAAAAA
CTGTCCCGCAAAATTAGGAAGTTCTGGTTTAAGTTGTATTAAATGTGGAAAATGTTCTGTTGGTATTTTCGAAGAAATAT
GTGAAAGAAAAGGAATTGGTATTTACATAGTACCTGGTTCTACATTCATTAAACGTGTAATAAAACAACGTCCATTTAAA
GGAGTTATTTGTGTTGCATGTCCTGTTGATTTAAATCAAGCATTGATGTTTTTATCAAATTACATAACACAAGGCGTATA
TCTATTAAATGATGGTTGTATTAATACAAGAGTTAATGAAAATGAAGTAATTTATTTACTAAACACAGTGAAACCTACAA
CCAATTATACACCTGAGATTGTAAATGCATAA

Upstream 100 bases:

>100_bases
ATTAATTATAAAAGTAATAGTTTTAAAAAAGTTAAAATATAATAAGTATTAATTAAAAAAAATAATAGGATTAAGATAAT
AAAATATTAGAAGGGAGAAT

Downstream 100 bases:

>100_bases
TATAATAAAAAAAATAATTTTAATACATTATTAAAATAATATAACTTCTTTTTTTTAAAAAATCAATACCATCTACTTTT
TTTTAAATATAATTAATTAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 223; Mature: 223

Protein sequence:

>223_residues
MDFNIFTLVGEIIVLIAIILIFLISITFILGNYTLNNDKLMFPKLLLLALNLTYQPTKNIMKFFKCDELFVDRVSINLRN
RLNINSFKKLNAKDLIVILPHCLRAKNCPAKLGSSGLSCIKCGKCSVGIFEEICERKGIGIYIVPGSTFIKRVIKQRPFK
GVICVACPVDLNQALMFLSNYITQGVYLLNDGCINTRVNENEVIYLLNTVKPTTNYTPEIVNA

Sequences:

>Translated_223_residues
MDFNIFTLVGEIIVLIAIILIFLISITFILGNYTLNNDKLMFPKLLLLALNLTYQPTKNIMKFFKCDELFVDRVSINLRN
RLNINSFKKLNAKDLIVILPHCLRAKNCPAKLGSSGLSCIKCGKCSVGIFEEICERKGIGIYIVPGSTFIKRVIKQRPFK
GVICVACPVDLNQALMFLSNYITQGVYLLNDGCINTRVNENEVIYLLNTVKPTTNYTPEIVNA
>Mature_223_residues
MDFNIFTLVGEIIVLIAIILIFLISITFILGNYTLNNDKLMFPKLLLLALNLTYQPTKNIMKFFKCDELFVDRVSINLRN
RLNINSFKKLNAKDLIVILPHCLRAKNCPAKLGSSGLSCIKCGKCSVGIFEEICERKGIGIYIVPGSTFIKRVIKQRPFK
GVICVACPVDLNQALMFLSNYITQGVYLLNDGCINTRVNENEVIYLLNTVKPTTNYTPEIVNA

Specific function: Unknown

COG id: COG1852

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002829
- InterPro:   IPR017446 [H]

Pfam domain/function: PF01976 DUF116 [H]

EC number: NA

Molecular weight: Translated: 25103; Mature: 25103

Theoretical pI: Translated: 9.15; Mature: 9.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.5 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
6.3 %Cys+Met (Translated Protein)
4.5 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
6.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDFNIFTLVGEIIVLIAIILIFLISITFILGNYTLNNDKLMFPKLLLLALNLTYQPTKNI
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCHHHHHHHHHHCCCCCCHHHH
MKFFKCDELFVDRVSINLRNRLNINSFKKLNAKDLIVILPHCLRAKNCPAKLGSSGLSCI
HHHHHHHHHHHHHHEEEECCCCCCCHHHHCCCCCCEEECCHHHCCCCCCHHHCCCCCCEE
KCGKCSVGIFEEICERKGIGIYIVPGSTFIKRVIKQRPFKGVICVACPVDLNQALMFLSN
ECCCCCCHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHH
YITQGVYLLNDGCINTRVNENEVIYLLNTVKPTTNYTPEIVNA
HHHCCEEEEECCCEECEECCCCEEEEEECCCCCCCCCCCCCCC
>Mature Secondary Structure
MDFNIFTLVGEIIVLIAIILIFLISITFILGNYTLNNDKLMFPKLLLLALNLTYQPTKNI
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCHHHHHHHHHHCCCCCCHHHH
MKFFKCDELFVDRVSINLRNRLNINSFKKLNAKDLIVILPHCLRAKNCPAKLGSSGLSCI
HHHHHHHHHHHHHHEEEECCCCCCCHHHHCCCCCCEEECCHHHCCCCCCHHHCCCCCCEE
KCGKCSVGIFEEICERKGIGIYIVPGSTFIKRVIKQRPFKGVICVACPVDLNQALMFLSN
ECCCCCCHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHH
YITQGVYLLNDGCINTRVNENEVIYLLNTVKPTTNYTPEIVNA
HHHCCEEEEECCCEECEECCCCEEEEEECCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]