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The map label for this gene is 84490042

Identifier: 84490042

GI number: 84490042

Start: 1421118

End: 1421636

Strand: Direct

Name: 84490042

Synonym: Msp_1254

Alternate gene names: NA

Gene position: 1421118-1421636 (Clockwise)

Preceding gene: 297616208

Following gene: 84490043

Centisome position: 80.41

GC content: 23.51

Gene sequence:

>519_bases
ATGATATTTACAATAAGTTCTAATTTAATTATTACAACAAGTAGAAAACCTTCCCAAATTACTAGAAGATTTGCTCAGTT
TCTTAAACACTATTTTAATGCTACATATATTAATCGAGGAAAAACTAGTTTCAATAAGATAAAAAATCAGGTCCCTGATG
AATCTAAGTTAGTTATTATTAATGAAACTAAGGGTAACCCAAGTAGTATTAATGTTTATGATATTGGTATTGATTCTGAA
AATCCATTGTATAGTTTATATGTAAATGTTTCATTACCACAAGAAAAATGTAATATCAATGTAGATAATGGTAATATTAT
TGTACTTTCTAAGACAAAATCATTAAATGAAATTACATCTAGGTTTATATCATTTAAACCTGAAAAAAAGGTGAAAACTA
ATTGTATCATTATAAAAGATGATGATAGAGAAGATATTATTGCAACAGTTTCATTTATTGATAAAAAAGGTATAGACACT
AAATATAAAGTATATATTAGGGGATTTAATAATAATTAA

Upstream 100 bases:

>100_bases
ATAAGTTATAAACTATTTTTATAAGGGAGATATTTTAAATCTCCTTTATTATTTTAATTTTTATTTAAAGAAAAAACTAA
TTTTATAATGAGATTTTATT

Downstream 100 bases:

>100_bases
TAAAATGTGTGATTTGATGGATAATAAAAACATATTAAAGAATATTGAAACTATATTTGAAGTTGAATTTAATAGTGAAA
ACCATGCACAGATAATTTAT

Product: hypothetical protein

Products: NA

Alternate protein names: Brix Domain Protein

Number of amino acids: Translated: 172; Mature: 172

Protein sequence:

>172_residues
MIFTISSNLIITTSRKPSQITRRFAQFLKHYFNATYINRGKTSFNKIKNQVPDESKLVIINETKGNPSSINVYDIGIDSE
NPLYSLYVNVSLPQEKCNINVDNGNIIVLSKTKSLNEITSRFISFKPEKKVKTNCIIIKDDDREDIIATVSFIDKKGIDT
KYKVYIRGFNNN

Sequences:

>Translated_172_residues
MIFTISSNLIITTSRKPSQITRRFAQFLKHYFNATYINRGKTSFNKIKNQVPDESKLVIINETKGNPSSINVYDIGIDSE
NPLYSLYVNVSLPQEKCNINVDNGNIIVLSKTKSLNEITSRFISFKPEKKVKTNCIIIKDDDREDIIATVSFIDKKGIDT
KYKVYIRGFNNN
>Mature_172_residues
MIFTISSNLIITTSRKPSQITRRFAQFLKHYFNATYINRGKTSFNKIKNQVPDESKLVIINETKGNPSSINVYDIGIDSE
NPLYSLYVNVSLPQEKCNINVDNGNIIVLSKTKSLNEITSRFISFKPEKKVKTNCIIIKDDDREDIIATVSFIDKKGIDT
KYKVYIRGFNNN

Specific function: Unknown

COG id: COG2136

COG function: function code JA; Predicted exosome subunit/U3 small nucleolar ribonucleoprotein (snoRNP) component, contains IMP4 domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19694; Mature: 19694

Theoretical pI: Translated: 10.04; Mature: 10.04

Prosite motif: PS50833 BRIX

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIFTISSNLIITTSRKPSQITRRFAQFLKHYFNATYINRGKTSFNKIKNQVPDESKLVII
CEEEEECCEEEEECCCHHHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHCCCCCEEEEE
NETKGNPSSINVYDIGIDSENPLYSLYVNVSLPQEKCNINVDNGNIIVLSKTKSLNEITS
ECCCCCCCEEEEEEECCCCCCCEEEEEEEEECCHHHCEEEECCCCEEEEECCCCHHHHHH
RFISFKPEKKVKTNCIIIKDDDREDIIATVSFIDKKGIDTKYKVYIRGFNNN
HHHCCCCCCCCCCEEEEEECCCCCCEEEEEEEHHHCCCCCEEEEEEEEECCC
>Mature Secondary Structure
MIFTISSNLIITTSRKPSQITRRFAQFLKHYFNATYINRGKTSFNKIKNQVPDESKLVII
CEEEEECCEEEEECCCHHHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHCCCCCEEEEE
NETKGNPSSINVYDIGIDSENPLYSLYVNVSLPQEKCNINVDNGNIIVLSKTKSLNEITS
ECCCCCCCEEEEEEECCCCCCCEEEEEEEEECCHHHCEEEECCCCEEEEECCCCHHHHHH
RFISFKPEKKVKTNCIIIKDDDREDIIATVSFIDKKGIDTKYKVYIRGFNNN
HHHCCCCCCCCCCEEEEEECCCCCCEEEEEEEHHHCCCCCEEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA