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The map label for this gene is ribD [C]

Identifier: 84489977

GI number: 84489977

Start: 1354403

End: 1355050

Strand: Direct

Name: ribD [C]

Synonym: Msp_1185

Alternate gene names: 84489977

Gene position: 1354403-1355050 (Clockwise)

Preceding gene: 84489976

Following gene: 84489979

Centisome position: 76.63

GC content: 25.77

Gene sequence:

>648_bases
ATGAAGCCATATGTATTATTAAATTCAGCCATGACAGTTGATGGTAAGATTGCAACCAACAACAGTTCAATGAAAATATC
TGGTAAGAATGATTTAATTAGAGTACATACTTTACGAAAAGAGTATGATGGTATCATGGTTGGCATAAATACTGTTTTAA
TTGATAATCCTAAATTAACAATTCATAAAATTAATTGTAAAAAATCAGAAAATCCTACAAGAATCATTGTTGATAGTAGT
GCTAGAATTCCATTAGATTCAAAAGTTTTAAATGATGATGCTAAAACAATTGTTATTGTATCATCTAAGGCCAACAAAGC
TAGTGTTGAATTATTAAAAGAAAAATGTAATGTTATTATATGTGGTTCAAAACAAGTTAATTTAAAATTAGCATTAGATA
AGTTATATTCCCTTGGAATAAAGAGTATTCTCCTAGAAGGTGGTTCAACACTTAACTTTTCAATGTTTAAAGAGAAACTT
ATCGATGAAGTTTCTATTTGTATTGGTTCTAAAATTTTAGGAGGATATGATTCAAAGACCTTTGTTGATGGTGAAGGTTT
TGATAAGAATGATTGTATTAATTTAAAAATAAAAAAAGTAGAAAAAATAGATGATGATATTTTATTAAAATATGATGTTA
TCTATTAA

Upstream 100 bases:

>100_bases
TAAACAAGGTTTTAAAGAAGTTTTAATAAATGCTGTTCGTAATGGTGAAAATATAGTAAATACTTTAAGAGAATTAAAAG
TTAATTACAAGTGAGTTTAT

Downstream 100 bases:

>100_bases
ATTTTTTTTAAATTAATCCATGTTTTTTAAGTATTTTTTCAGGATTATCTTTTAATATTTTTGGAATTTCATCTTCAGGT
ATTTCTGCACCTCTTGCAAT

Product: 5-amino-6-(5-phosphoribosylamino)uracil reductase

Products: NA

Alternate protein names: HTP reductase [H]

Number of amino acids: Translated: 215; Mature: 215

Protein sequence:

>215_residues
MKPYVLLNSAMTVDGKIATNNSSMKISGKNDLIRVHTLRKEYDGIMVGINTVLIDNPKLTIHKINCKKSENPTRIIVDSS
ARIPLDSKVLNDDAKTIVIVSSKANKASVELLKEKCNVIICGSKQVNLKLALDKLYSLGIKSILLEGGSTLNFSMFKEKL
IDEVSICIGSKILGGYDSKTFVDGEGFDKNDCINLKIKKVEKIDDDILLKYDVIY

Sequences:

>Translated_215_residues
MKPYVLLNSAMTVDGKIATNNSSMKISGKNDLIRVHTLRKEYDGIMVGINTVLIDNPKLTIHKINCKKSENPTRIIVDSS
ARIPLDSKVLNDDAKTIVIVSSKANKASVELLKEKCNVIICGSKQVNLKLALDKLYSLGIKSILLEGGSTLNFSMFKEKL
IDEVSICIGSKILGGYDSKTFVDGEGFDKNDCINLKIKKVEKIDDDILLKYDVIY
>Mature_215_residues
MKPYVLLNSAMTVDGKIATNNSSMKISGKNDLIRVHTLRKEYDGIMVGINTVLIDNPKLTIHKINCKKSENPTRIIVDSS
ARIPLDSKVLNDDAKTIVIVSSKANKASVELLKEKCNVIICGSKQVNLKLALDKLYSLGIKSILLEGGSTLNFSMFKEKL
IDEVSICIGSKILGGYDSKTFVDGEGFDKNDCINLKIKKVEKIDDDILLKYDVIY

Specific function: Converts 2,5-Diamino-6-(Ribosylamino)-4(3h)-Pyrimidinone 5'-Phosphate Into 5-Amino-6-(Ribosylamino)-2,4(1h,3h)- Pyrimidinedione 5'-Phosphate. [C]

COG id: COG1985

COG function: function code H; Pyrimidine reductase, riboflavin biosynthesis

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the HTP reductase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006401
- InterPro:   IPR011549
- InterPro:   IPR002734 [H]

Pfam domain/function: PF01872 RibD_C [H]

EC number: =1.1.1.193 [H]

Molecular weight: Translated: 23770; Mature: 23770

Theoretical pI: Translated: 9.13; Mature: 9.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPYVLLNSAMTVDGKIATNNSSMKISGKNDLIRVHTLRKEYDGIMVGINTVLIDNPKLT
CCCEEEEECEEEECCEEEECCCEEEEECCCCEEEEEEEHHHCCCEEEEEEEEEEECCCEE
IHKINCKKSENPTRIIVDSSARIPLDSKVLNDDAKTIVIVSSKANKASVELLKEKCNVII
EEEEECCCCCCCCEEEEECCCCCCCCHHEECCCCCEEEEEECCCCHHHHHHHHHHCCEEE
CGSKQVNLKLALDKLYSLGIKSILLEGGSTLNFSMFKEKLIDEVSICIGSKILGGYDSKT
ECCCEEEEEEEEHHHHHHCHHEEEECCCCEEEHHHHHHHHHHHHHHHHCCHHCCCCCCCE
FVDGEGFDKNDCINLKIKKVEKIDDDILLKYDVIY
EECCCCCCCCCEEEEEEEEECCCCCCEEEEEEEEC
>Mature Secondary Structure
MKPYVLLNSAMTVDGKIATNNSSMKISGKNDLIRVHTLRKEYDGIMVGINTVLIDNPKLT
CCCEEEEECEEEECCEEEECCCEEEEECCCCEEEEEEEHHHCCCEEEEEEEEEEECCCEE
IHKINCKKSENPTRIIVDSSARIPLDSKVLNDDAKTIVIVSSKANKASVELLKEKCNVII
EEEEECCCCCCCCEEEEECCCCCCCCHHEECCCCCEEEEEECCCCHHHHHHHHHHCCEEE
CGSKQVNLKLALDKLYSLGIKSILLEGGSTLNFSMFKEKLIDEVSICIGSKILGGYDSKT
ECCCEEEEEEEEHHHHHHCHHEEEECCCCEEEHHHHHHHHHHHHHHHHCCHHCCCCCCCE
FVDGEGFDKNDCINLKIKKVEKIDDDILLKYDVIY
EECCCCCCCCCEEEEEEEEECCCCCCEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9371463 [H]