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The map label for this gene is ycfH [C]

Identifier: 84489975

GI number: 84489975

Start: 1353245

End: 1354003

Strand: Direct

Name: ycfH [C]

Synonym: Msp_1183

Alternate gene names: 84489975

Gene position: 1353245-1354003 (Clockwise)

Preceding gene: 84489974

Following gene: 84489976

Centisome position: 76.57

GC content: 27.67

Gene sequence:

>759_bases
ATGATAGATACACATTGTCATTTAAGTTTTGAAGAATTTGATAATAAAAGAGAAGAAATTATAGAAAATACTAGAAAAGA
ATTTAAATATATTGTTGACTCTGGTGCTAGTTATAAGGGTAATATTAGATCATTAAAAGTAGCATCACAATACAATGGTT
TTATAAAAACCACTATGGGTTACCATCCAGAGTATGCAGGAAATGATAATAAAGAAACTATTAATAAAACTTTGAAACAA
ATTAGTGATAATATAGATAATATTCAAGCTATTGGCGAAATTGGACTTGATTTCTCAGTAAAAAGATCCGAAAATGAATT
AAAAAGACAACATACTGTTTTTGAAAAATTATTAGATATGGCAACTGAATATGATATGCCTATTGTTTTACATGTACGTG
ATGCTGAAGCTCATGCTCTTAATATTGTAAAAAAATATACTGAAATTCCAGATGTTATATTTCATTGTTTTAGTGGAAGT
AAAGAAACTGCAATGGAAGCTGTTGATTATGGATATTATATTTCTTTTGCTACAAATACCCTTTTTTCAAAAAGACATAA
AAAAAATATGAAAAAGGTTCCCCTTGAAAACATGCTTACTGAAACAGATAGTCCCTATCTTTCCCCTGTGAAGGGTGAAT
ATAATCAACCACTGAATATAAGAAAGACTATTGAAAGAATTGCAAGAACAAAAAAGATTGATTTTGAAGAAATAGAAAAA
GAAACTGAGAAAAATGCAATAGATGTATATAACCTGTAG

Upstream 100 bases:

>100_bases
TTGGCCACAACTAAGAAAAGTAGATTTTCTACGCGCAATAAGATCATATACACAAAGACAAAGAAGATTTGGAAGATAAC
TAGATAAAAGAAGGATAAAT

Downstream 100 bases:

>100_bases
GAGATTGTATTTATGGATGATATGTTAAAAATGTATATTGAAAAAAGAAGAGAATATGAATCTAAAATAAAAAAGGATTT
ATTAGATATTGAGAAATCTG

Product: DNase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 252; Mature: 252

Protein sequence:

>252_residues
MIDTHCHLSFEEFDNKREEIIENTRKEFKYIVDSGASYKGNIRSLKVASQYNGFIKTTMGYHPEYAGNDNKETINKTLKQ
ISDNIDNIQAIGEIGLDFSVKRSENELKRQHTVFEKLLDMATEYDMPIVLHVRDAEAHALNIVKKYTEIPDVIFHCFSGS
KETAMEAVDYGYYISFATNTLFSKRHKKNMKKVPLENMLTETDSPYLSPVKGEYNQPLNIRKTIERIARTKKIDFEEIEK
ETEKNAIDVYNL

Sequences:

>Translated_252_residues
MIDTHCHLSFEEFDNKREEIIENTRKEFKYIVDSGASYKGNIRSLKVASQYNGFIKTTMGYHPEYAGNDNKETINKTLKQ
ISDNIDNIQAIGEIGLDFSVKRSENELKRQHTVFEKLLDMATEYDMPIVLHVRDAEAHALNIVKKYTEIPDVIFHCFSGS
KETAMEAVDYGYYISFATNTLFSKRHKKNMKKVPLENMLTETDSPYLSPVKGEYNQPLNIRKTIERIARTKKIDFEEIEK
ETEKNAIDVYNL
>Mature_252_residues
MIDTHCHLSFEEFDNKREEIIENTRKEFKYIVDSGASYKGNIRSLKVASQYNGFIKTTMGYHPEYAGNDNKETINKTLKQ
ISDNIDNIQAIGEIGLDFSVKRSENELKRQHTVFEKLLDMATEYDMPIVLHVRDAEAHALNIVKKYTEIPDVIFHCFSGS
KETAMEAVDYGYYISFATNTLFSKRHKKNMKKVPLENMLTETDSPYLSPVKGEYNQPLNIRKTIERIARTKKIDFEEIEK
ETEKNAIDVYNL

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Homo sapiens, GI110349730, Length=260, Percent_Identity=30.3846153846154, Blast_Score=138, Evalue=5e-33,
Organism=Homo sapiens, GI226061853, Length=268, Percent_Identity=30.5970149253731, Blast_Score=135, Evalue=4e-32,
Organism=Homo sapiens, GI110349734, Length=260, Percent_Identity=30.3846153846154, Blast_Score=134, Evalue=7e-32,
Organism=Homo sapiens, GI226061614, Length=253, Percent_Identity=29.2490118577075, Blast_Score=127, Evalue=1e-29,
Organism=Homo sapiens, GI226061595, Length=229, Percent_Identity=29.6943231441048, Blast_Score=112, Evalue=4e-25,
Organism=Homo sapiens, GI225903439, Length=243, Percent_Identity=26.7489711934156, Blast_Score=87, Evalue=1e-17,
Organism=Homo sapiens, GI14042943, Length=243, Percent_Identity=26.7489711934156, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI225903424, Length=270, Percent_Identity=27.7777777777778, Blast_Score=83, Evalue=3e-16,
Organism=Escherichia coli, GI1787342, Length=262, Percent_Identity=27.4809160305344, Blast_Score=113, Evalue=2e-26,
Organism=Escherichia coli, GI48994985, Length=264, Percent_Identity=24.6212121212121, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI87082439, Length=256, Percent_Identity=24.21875, Blast_Score=93, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI71980746, Length=259, Percent_Identity=27.4131274131274, Blast_Score=109, Evalue=1e-24,
Organism=Caenorhabditis elegans, GI17559024, Length=285, Percent_Identity=25.2631578947368, Blast_Score=98, Evalue=3e-21,
Organism=Caenorhabditis elegans, GI17565396, Length=223, Percent_Identity=30.4932735426009, Blast_Score=92, Evalue=3e-19,
Organism=Caenorhabditis elegans, GI17543026, Length=221, Percent_Identity=28.5067873303167, Blast_Score=83, Evalue=2e-16,
Organism=Drosophila melanogaster, GI24648690, Length=290, Percent_Identity=24.1379310344828, Blast_Score=92, Evalue=3e-19,
Organism=Drosophila melanogaster, GI24586117, Length=189, Percent_Identity=30.1587301587302, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI221330018, Length=189, Percent_Identity=30.1587301587302, Blast_Score=76, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278
- InterPro:   IPR015991 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.-

Molecular weight: Translated: 29254; Mature: 29254

Theoretical pI: Translated: 6.32; Mature: 6.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIDTHCHLSFEEFDNKREEIIENTRKEFKYIVDSGASYKGNIRSLKVASQYNGFIKTTMG
CCCCCEECCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEHHHHCCEEEHHCC
YHPEYAGNDNKETINKTLKQISDNIDNIQAIGEIGLDFSVKRSENELKRQHTVFEKLLDM
CCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHHH
ATEYDMPIVLHVRDAEAHALNIVKKYTEIPDVIFHCFSGSKETAMEAVDYGYYISFATNT
HHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCEEEEHHHHH
LFSKRHKKNMKKVPLENMLTETDSPYLSPVKGEYNQPLNIRKTIERIARTKKIDFEEIEK
HHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHH
ETEKNAIDVYNL
HHHCCCEEECCC
>Mature Secondary Structure
MIDTHCHLSFEEFDNKREEIIENTRKEFKYIVDSGASYKGNIRSLKVASQYNGFIKTTMG
CCCCCEECCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEHHHHCCEEEHHCC
YHPEYAGNDNKETINKTLKQISDNIDNIQAIGEIGLDFSVKRSENELKRQHTVFEKLLDM
CCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHHH
ATEYDMPIVLHVRDAEAHALNIVKKYTEIPDVIFHCFSGSKETAMEAVDYGYYISFATNT
HHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCEEEEHHHHH
LFSKRHKKNMKKVPLENMLTETDSPYLSPVKGEYNQPLNIRKTIERIARTKKIDFEEIEK
HHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHH
ETEKNAIDVYNL
HHHCCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]