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The map label for this gene is yhaM [H]

Identifier: 84489957

GI number: 84489957

Start: 1335356

End: 1336246

Strand: Direct

Name: yhaM [H]

Synonym: Msp_1165

Alternate gene names: 84489957

Gene position: 1335356-1336246 (Clockwise)

Preceding gene: 84489955

Following gene: 84489958

Centisome position: 75.55

GC content: 27.5

Gene sequence:

>891_bases
TTGACAAAAAAAGAAGAAGATTATATAAAGGAATTCGCCCAAGATCGAGAAATTATCAGCCCTTTTCTCATAAAACAAAA
AGAAATGAAAAAAACAAAAACAAACACATCATATCTTGAAGTAACACTACAAGACAAAACAGGACAAATAAAAGGTAGAA
TGTTTAAACACAGACCATTTAAAACGTATGCAAAGATAGAAAAAAATACTGTGTGGAATATTGTTGGAAAAATACAAGAA
TTTCCAACTGAGAGTGGAAGATTTAATATATTAATTGAAAGTATGAACCCAACAACAAACTACAATGAAGAAGATTTTAT
AAGAAAAGTAGAAGACTATGATAAACATGTAGAATTTCTATTTAACACCATAGAAACAATTGAAAATATCCACCTAAAAA
AATTATTAAAAGAATTTTTTAATGATGAAGAATTTAAAAATAATTTTTTAACAGCACCTGCTGCAAAAATACATCATCAT
AATTATAAAGGAGGACTACTTGTTCATACAAATGAAGTAATAAAAATATGTCAAACAATAACATACATCTACAACAAAAT
CAACTATGATTTACTAATAACTGGAGCAATACTTCATGATATAGGAAAAATTGAAACATATGACTATGAAACTGAAAACA
TTGAAATGAAATATGAAGGAATCATGTTAGATCATCTATTTATTGGAGCAAATATGATAGAAAATAGAATTAAAAAAATT
GATGCACCCAAAAAACTTAAAATACAACTAATACATATGATACTTAGTCATCATGGAGACACATCCCTTGGATGGGGTTC
TGCAGTGAGTCCAAAAACTCCTGAAGCATTAGCACTACATCATGCAGATGATATGAGTGCAAAAATTACCAGTTCATTAG
AAAATAAATAA

Upstream 100 bases:

>100_bases
ATACAAAAATCCACTAGAAAAAAACTAAAAAACATTGAATAAAATTTTAATAAGTATTAAATTATAAAATAATTATAATC
AAAAGAATGAAGGAAAGAAA

Downstream 100 bases:

>100_bases
TAATTAAATTTATAATAGAATAATATAAAATATAATAATTAATTAATTATGAATTAATAAACAAATTTCAAATATTTTAT
CAATTTATACTTCATAATTT

Product: hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 296; Mature: 295

Protein sequence:

>296_residues
MTKKEEDYIKEFAQDREIISPFLIKQKEMKKTKTNTSYLEVTLQDKTGQIKGRMFKHRPFKTYAKIEKNTVWNIVGKIQE
FPTESGRFNILIESMNPTTNYNEEDFIRKVEDYDKHVEFLFNTIETIENIHLKKLLKEFFNDEEFKNNFLTAPAAKIHHH
NYKGGLLVHTNEVIKICQTITYIYNKINYDLLITGAILHDIGKIETYDYETENIEMKYEGIMLDHLFIGANMIENRIKKI
DAPKKLKIQLIHMILSHHGDTSLGWGSAVSPKTPEALALHHADDMSAKITSSLENK

Sequences:

>Translated_296_residues
MTKKEEDYIKEFAQDREIISPFLIKQKEMKKTKTNTSYLEVTLQDKTGQIKGRMFKHRPFKTYAKIEKNTVWNIVGKIQE
FPTESGRFNILIESMNPTTNYNEEDFIRKVEDYDKHVEFLFNTIETIENIHLKKLLKEFFNDEEFKNNFLTAPAAKIHHH
NYKGGLLVHTNEVIKICQTITYIYNKINYDLLITGAILHDIGKIETYDYETENIEMKYEGIMLDHLFIGANMIENRIKKI
DAPKKLKIQLIHMILSHHGDTSLGWGSAVSPKTPEALALHHADDMSAKITSSLENK
>Mature_295_residues
TKKEEDYIKEFAQDREIISPFLIKQKEMKKTKTNTSYLEVTLQDKTGQIKGRMFKHRPFKTYAKIEKNTVWNIVGKIQEF
PTESGRFNILIESMNPTTNYNEEDFIRKVEDYDKHVEFLFNTIETIENIHLKKLLKEFFNDEEFKNNFLTAPAAKIHHHN
YKGGLLVHTNEVIKICQTITYIYNKINYDLLITGAILHDIGKIETYDYETENIEMKYEGIMLDHLFIGANMIENRIKKID
APKKLKIQLIHMILSHHGDTSLGWGSAVSPKTPEALALHHADDMSAKITSSLENK

Specific function: Shows a 3'-5' exoribonuclease activity [H]

COG id: COG3481

COG function: function code R; Predicted HD-superfamily hydrolase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OB DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020873
- InterPro:   IPR003607
- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR004365 [H]

Pfam domain/function: PF01336 tRNA_anti [H]

EC number: NA

Molecular weight: Translated: 34526; Mature: 34395

Theoretical pI: Translated: 7.25; Mature: 7.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKKEEDYIKEFAQDREIISPFLIKQKEMKKTKTNTSYLEVTLQDKTGQIKGRMFKHRPF
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCHHHHCCCH
KTYAKIEKNTVWNIVGKIQEFPTESGRFNILIESMNPTTNYNEEDFIRKVEDYDKHVEFL
HHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHH
FNTIETIENIHLKKLLKEFFNDEEFKNNFLTAPAAKIHHHNYKGGLLVHTNEVIKICQTI
HHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCHHHHHCCCCCCCEEEEHHHHHHHHHHH
TYIYNKINYDLLITGAILHDIGKIETYDYETENIEMKYEGIMLDHLFIGANMIENRIKKI
HHHHHHCCCEEEEEHHHHHHHCCCEECCCCCCCEEEEECCEEEHHHHHHHHHHHHHHHHC
DAPKKLKIQLIHMILSHHGDTSLGWGSAVSPKTPEALALHHADDMSAKITSSLENK
CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHCCC
>Mature Secondary Structure 
TKKEEDYIKEFAQDREIISPFLIKQKEMKKTKTNTSYLEVTLQDKTGQIKGRMFKHRPF
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCHHHHCCCH
KTYAKIEKNTVWNIVGKIQEFPTESGRFNILIESMNPTTNYNEEDFIRKVEDYDKHVEFL
HHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHH
FNTIETIENIHLKKLLKEFFNDEEFKNNFLTAPAAKIHHHNYKGGLLVHTNEVIKICQTI
HHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCHHHHHCCCCCCCEEEEHHHHHHHHHHH
TYIYNKINYDLLITGAILHDIGKIETYDYETENIEMKYEGIMLDHLFIGANMIENRIKKI
HHHHHHCCCEEEEEHHHHHHHCCCEECCCCCCCEEEEECCEEEHHHHHHHHHHHHHHHHC
DAPKKLKIQLIHMILSHHGDTSLGWGSAVSPKTPEALALHHADDMSAKITSSLENK
CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA