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The map label for this gene is 84489942

Identifier: 84489942

GI number: 84489942

Start: 1322961

End: 1323695

Strand: Direct

Name: 84489942

Synonym: Msp_1150

Alternate gene names: NA

Gene position: 1322961-1323695 (Clockwise)

Preceding gene: 84489937

Following gene: 84489946

Centisome position: 74.85

GC content: 30.2

Gene sequence:

>735_bases
GTGATTAAAATTTGGGATACAAGTAACGATTATAGATTAAAAGTAGCTGAAAAAGCAATAGAAGATTTTATTAGAGTAGT
TGAAGGTTCTAATCTAAGAGGTTCATGGAATAAGAAGAAAGTTAGATTAATTGCTAAGGATATGAATCCAGATATTCAAA
CATTATATTATTCATATATTTCTCCAGATCAACTTGCAAAAACACCACAGGTGAATAATCTTTTAAAGAGTGTTGATGAA
ATTATTGAAAATCTTGGTGGAGAAAATTATTCTAAAAAATTTTTATCTGAATTAAATAGAGAAGAACGTGAAAAACTTGA
ATTACCCCTATCAAAGATGAAATTTTTCTTCAATACAATACGCGGACTTCCTGCTAGATTAATGCTTGGAGAAATTGATG
ATCCTATTATTGGTGTTGATATTCAAGTTGGTGAATTAGTAAGTGTTAGTAAACATCCAAAAACAGATACATTAATGGTT
TGTAATGTAAATCTAGGTAAACGTGCAATTACTGTAATTACCAATGATTTATCTGTTAAAGATAATGATCATGTTGCTGT
TTCTTTATTACCACCTAGTGCATTTATGGGAATTAGTAGTGAAGGTATGTTTTTAGGGGCTGGAGAAGGTATTTTAAAAG
ATGTTGAGGGAGAATTAGGTAGTCTACCACAACATATCGACGTTGCTGCACTTAATGAAACAAGAAATCTTGTAGACCAG
TATCTTAAAGATTAA

Upstream 100 bases:

>100_bases
TATTCTCCATTTAAAAGACTATATGTATGAAAACAATATAATTAAAAAAAATGAAATATATATAATTATATTGAATTAAT
AAACAAAGATAGAAATTTGG

Downstream 100 bases:

>100_bases
TCTCCCAAACCTTTTTTTTATAAATTACTAATTTTTTTATCTAAATTATCTAATTTTGTTTTTATGTCATTTATTTCATT
ATTTTTAATTTCAGTATCAA

Product: tRNA-binding protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 244; Mature: 244

Protein sequence:

>244_residues
MIKIWDTSNDYRLKVAEKAIEDFIRVVEGSNLRGSWNKKKVRLIAKDMNPDIQTLYYSYISPDQLAKTPQVNNLLKSVDE
IIENLGGENYSKKFLSELNREEREKLELPLSKMKFFFNTIRGLPARLMLGEIDDPIIGVDIQVGELVSVSKHPKTDTLMV
CNVNLGKRAITVITNDLSVKDNDHVAVSLLPPSAFMGISSEGMFLGAGEGILKDVEGELGSLPQHIDVAALNETRNLVDQ
YLKD

Sequences:

>Translated_244_residues
MIKIWDTSNDYRLKVAEKAIEDFIRVVEGSNLRGSWNKKKVRLIAKDMNPDIQTLYYSYISPDQLAKTPQVNNLLKSVDE
IIENLGGENYSKKFLSELNREEREKLELPLSKMKFFFNTIRGLPARLMLGEIDDPIIGVDIQVGELVSVSKHPKTDTLMV
CNVNLGKRAITVITNDLSVKDNDHVAVSLLPPSAFMGISSEGMFLGAGEGILKDVEGELGSLPQHIDVAALNETRNLVDQ
YLKD
>Mature_244_residues
MIKIWDTSNDYRLKVAEKAIEDFIRVVEGSNLRGSWNKKKVRLIAKDMNPDIQTLYYSYISPDQLAKTPQVNNLLKSVDE
IIENLGGENYSKKFLSELNREEREKLELPLSKMKFFFNTIRGLPARLMLGEIDDPIIGVDIQVGELVSVSKHPKTDTLMV
CNVNLGKRAITVITNDLSVKDNDHVAVSLLPPSAFMGISSEGMFLGAGEGILKDVEGELGSLPQHIDVAALNETRNLVDQ
YLKD

Specific function: Unknown

COG id: COG2517

COG function: function code R; Predicted RNA-binding protein containing a C-terminal EMAP domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 27320; Mature: 27320

Theoretical pI: Translated: 5.04; Mature: 5.04

Prosite motif: PS50886 TRBD

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKIWDTSNDYRLKVAEKAIEDFIRVVEGSNLRGSWNKKKVRLIAKDMNPDIQTLYYSYI
CEEEEECCCCEEEHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHC
SPDQLAKTPQVNNLLKSVDEIIENLGGENYSKKFLSELNREEREKLELPLSKMKFFFNTI
CHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHCHHHHHHHHCCHHHHHHHHHHH
RGLPARLMLGEIDDPIIGVDIQVGELVSVSKHPKTDTLMVCNVNLGKRAITVITNDLSVK
HCCCHHEEECCCCCCEEEEEEECCCEEECCCCCCCCEEEEEECCCCCEEEEEEECCCEEC
DNDHVAVSLLPPSAFMGISSEGMFLGAGEGILKDVEGELGSLPQHIDVAALNETRNLVDQ
CCCCEEEEEECCHHHCCCCCCCEEEECCCHHHHHHCHHHCCCCCCCCHHHHHHHHHHHHH
YLKD
HHCC
>Mature Secondary Structure
MIKIWDTSNDYRLKVAEKAIEDFIRVVEGSNLRGSWNKKKVRLIAKDMNPDIQTLYYSYI
CEEEEECCCCEEEHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHC
SPDQLAKTPQVNNLLKSVDEIIENLGGENYSKKFLSELNREEREKLELPLSKMKFFFNTI
CHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHCHHHHHHHHCCHHHHHHHHHHH
RGLPARLMLGEIDDPIIGVDIQVGELVSVSKHPKTDTLMVCNVNLGKRAITVITNDLSVK
HCCCHHEEECCCCCCEEEEEEECCCEEECCCCCCCCEEEEEECCCCCEEEEEEECCCEEC
DNDHVAVSLLPPSAFMGISSEGMFLGAGEGILKDVEGELGSLPQHIDVAALNETRNLVDQ
CCCCEEEEEECCHHHCCCCCCCEEEECCCHHHHHHCHHHCCCCCCCCHHHHHHHHHHHHH
YLKD
HHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA