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The map label for this gene is nifU [H]

Identifier: 84489802

GI number: 84489802

Start: 1151621

End: 1152007

Strand: Direct

Name: nifU [H]

Synonym: Msp_1003

Alternate gene names: 84489802

Gene position: 1151621-1152007 (Clockwise)

Preceding gene: 84489801

Following gene: 84489804

Centisome position: 65.16

GC content: 33.85

Gene sequence:

>387_bases
ATGCAATATAGTGATAAAGTAGTAGATCATTACACAAATCCAAGAAATACTGGAGTAATTAAAAATCCAGATGGTGAAGG
AACTGTGGGAAACCCAGTATGTGGGGATATAATGACAATCTACATAAAAGTAGATGATGACAACAAATTATCTGACGTAA
AATTCAGTACATTTGGTTGTGGAGCAGCAATTGCTACAAGCAGTATGATAACAGAAATGGCTATTGGAATGGATGTTGAT
GAAGCATATCATATTACAAGAAACGATGTAGCAGATGAATTAGATGGCCTACCACCAATTAAATTACACTGTTCTAACTT
AGCAGCAGATGCTCTTCAAGCTGCTATTGAAAATTACAGAGAAAAAAAAGAAAAAGGTGAATTATAA

Upstream 100 bases:

>100_bases
CACCATTATGGGATAATGAAACAGATGAATATATTGGAGATAGATTTGAAAAACCATTAGAAGATGAAGATATAGACAGA
TACTAAATAGGTGATTAAAT

Downstream 100 bases:

>100_bases
TATTATTCATCCTTTAATCTTCTTTAATAGATATGAATTAATTTATTTAAAAAAAAAGTTTACTAGTTTTATAAAAAAAT
AAAAAATAATAGGAGAAATT

Product: NifU protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 128; Mature: 128

Protein sequence:

>128_residues
MQYSDKVVDHYTNPRNTGVIKNPDGEGTVGNPVCGDIMTIYIKVDDDNKLSDVKFSTFGCGAAIATSSMITEMAIGMDVD
EAYHITRNDVADELDGLPPIKLHCSNLAADALQAAIENYREKKEKGEL

Sequences:

>Translated_128_residues
MQYSDKVVDHYTNPRNTGVIKNPDGEGTVGNPVCGDIMTIYIKVDDDNKLSDVKFSTFGCGAAIATSSMITEMAIGMDVD
EAYHITRNDVADELDGLPPIKLHCSNLAADALQAAIENYREKKEKGEL
>Mature_128_residues
MQYSDKVVDHYTNPRNTGVIKNPDGEGTVGNPVCGDIMTIYIKVDDDNKLSDVKFSTFGCGAAIATSSMITEMAIGMDVD
EAYHITRNDVADELDGLPPIKLHCSNLAADALQAAIENYREKKEKGEL

Specific function: May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins (Potential) [H]

COG id: COG0822

COG function: function code C; NifU homolog involved in Fe-S cluster formation

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nifU family [H]

Homologues:

Organism=Homo sapiens, GI56699456, Length=130, Percent_Identity=52.3076923076923, Blast_Score=135, Evalue=9e-33,
Organism=Homo sapiens, GI24307953, Length=130, Percent_Identity=51.5384615384615, Blast_Score=132, Evalue=7e-32,
Organism=Escherichia coli, GI1788878, Length=127, Percent_Identity=52.755905511811, Blast_Score=144, Evalue=2e-36,
Organism=Caenorhabditis elegans, GI17543474, Length=127, Percent_Identity=51.9685039370079, Blast_Score=138, Evalue=8e-34,
Organism=Saccharomyces cerevisiae, GI6325122, Length=125, Percent_Identity=52.8, Blast_Score=132, Evalue=1e-32,
Organism=Saccharomyces cerevisiae, GI6324800, Length=130, Percent_Identity=50, Blast_Score=130, Evalue=7e-32,
Organism=Drosophila melanogaster, GI21355597, Length=126, Percent_Identity=51.5873015873016, Blast_Score=137, Evalue=2e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011339
- InterPro:   IPR002871 [H]

Pfam domain/function: PF01592 NifU_N [H]

EC number: NA

Molecular weight: Translated: 13926; Mature: 13926

Theoretical pI: Translated: 4.32; Mature: 4.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQYSDKVVDHYTNPRNTGVIKNPDGEGTVGNPVCGDIMTIYIKVDDDNKLSDVKFSTFGC
CCCCCCHHHHCCCCCCCCCEECCCCCCCCCCCCCCCEEEEEEEECCCCCCCCEEECCCCC
GAAIATSSMITEMAIGMDVDEAYHITRNDVADELDGLPPIKLHCSNLAADALQAAIENYR
CHHHHHHHHHHHHHHCCCCHHHHHCHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHH
EKKEKGEL
HHHHCCCC
>Mature Secondary Structure
MQYSDKVVDHYTNPRNTGVIKNPDGEGTVGNPVCGDIMTIYIKVDDDNKLSDVKFSTFGC
CCCCCCHHHHCCCCCCCCCEECCCCCCCCCCCCCCCEEEEEEEECCCCCCCCEEECCCCC
GAAIATSSMITEMAIGMDVDEAYHITRNDVADELDGLPPIKLHCSNLAADALQAAIENYR
CHHHHHHHHHHHHHHCCCCHHHHHCHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHH
EKKEKGEL
HHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]