Click here to switch to the map view.

The map label for this gene is yciO [C]

Identifier: 84488926

GI number: 84488926

Start: 109391

End: 110017

Strand: Direct

Name: yciO [C]

Synonym: Msp_0096

Alternate gene names: 84488926

Gene position: 109391-110017 (Clockwise)

Preceding gene: 84488915

Following gene: 84488927

Centisome position: 6.19

GC content: 25.68

Gene sequence:

>627_bases
ATGGAAATGGTGTATATAGTAGATAATCCTAATAAAAATGAATTAAATAAGATTCGTTCTATGTTAGGACAAGGAAAATT
AGTAGTTTATCCTACAGACACAATTTATGGAATTGGTGTAGACATAAATAACATTGATGCCGTGAAAAAAGTGTATATGA
CTAAGAAAAGATCGTATGATAAGCCTATTTCTATATGTTTACATGATATAACACAAGTAAAAGAAGTAGCAATAGTAACA
GATGAAATAGAACATATAATAAATGAATTACTACCTGGACCATACACCTTACTTCTTAGAAAAAAAAGTAATATACCAGA
TATACTAACAGCAAATACAAATATTATTGGAATAAGAATACCTGATAATAAAATAACACATAGTCTAACAAAGGATTTTC
CAATCACAAGTACAAGTGCTAATCTTTCAAATATTCAAACACCAGACAACATAACAGATATAAAAAAACAGTTAGGTGAT
AATATTGATATTTACATAGACTGTGGTAAAAAAATAAAGAATCAACCATCAACAATAATAGACCTAACACAACAAAACCC
TAAAATAATAAGACAACATAAGAATAATGAATTAATAAATAAAATATTGAAAATTGATTTATATTAA

Upstream 100 bases:

>100_bases
CTATTTTTCCTGTTATTTCATTAGCTTGTGGTCGTATTTTATTATTTAGCATAGTATTCTATTTATAATTAGGATTATAT
ATAAGTATATAAAATGGTAG

Downstream 100 bases:

>100_bases
TTATAATTATAATTAAAGTAGAGGAAGTGTATTATATGACATTTACTGATAAGAGAGGAAATAAGATAGAACTTGGTTCA
TATATAATCTATGCTAATAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 208; Mature: 208

Protein sequence:

>208_residues
MEMVYIVDNPNKNELNKIRSMLGQGKLVVYPTDTIYGIGVDINNIDAVKKVYMTKKRSYDKPISICLHDITQVKEVAIVT
DEIEHIINELLPGPYTLLLRKKSNIPDILTANTNIIGIRIPDNKITHSLTKDFPITSTSANLSNIQTPDNITDIKKQLGD
NIDIYIDCGKKIKNQPSTIIDLTQQNPKIIRQHKNNELINKILKIDLY

Sequences:

>Translated_208_residues
MEMVYIVDNPNKNELNKIRSMLGQGKLVVYPTDTIYGIGVDINNIDAVKKVYMTKKRSYDKPISICLHDITQVKEVAIVT
DEIEHIINELLPGPYTLLLRKKSNIPDILTANTNIIGIRIPDNKITHSLTKDFPITSTSANLSNIQTPDNITDIKKQLGD
NIDIYIDCGKKIKNQPSTIIDLTQQNPKIIRQHKNNELINKILKIDLY
>Mature_208_residues
MEMVYIVDNPNKNELNKIRSMLGQGKLVVYPTDTIYGIGVDINNIDAVKKVYMTKKRSYDKPISICLHDITQVKEVAIVT
DEIEHIINELLPGPYTLLLRKKSNIPDILTANTNIIGIRIPDNKITHSLTKDFPITSTSANLSNIQTPDNITDIKKQLGD
NIDIYIDCGKKIKNQPSTIIDLTQQNPKIIRQHKNNELINKILKIDLY

Specific function: Unknown

COG id: COG0009

COG function: function code J; Putative translation factor (SUA5)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 YrdC-like domain [H]

Homologues:

Organism=Homo sapiens, GI58761510, Length=170, Percent_Identity=32.9411764705882, Blast_Score=86, Evalue=2e-17,
Organism=Escherichia coli, GI87081864, Length=189, Percent_Identity=26.4550264550265, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI2367210, Length=149, Percent_Identity=25.503355704698, Blast_Score=73, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17537239, Length=175, Percent_Identity=33.7142857142857, Blast_Score=86, Evalue=1e-17,
Organism=Saccharomyces cerevisiae, GI6321269, Length=183, Percent_Identity=29.5081967213115, Blast_Score=72, Evalue=5e-14,
Organism=Drosophila melanogaster, GI78707274, Length=181, Percent_Identity=29.8342541436464, Blast_Score=97, Evalue=6e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017945
- InterPro:   IPR004388
- InterPro:   IPR006070 [H]

Pfam domain/function: PF01300 Sua5_yciO_yrdC [H]

EC number: NA

Molecular weight: Translated: 23605; Mature: 23605

Theoretical pI: Translated: 8.95; Mature: 8.95

Prosite motif: PS51163 YRDC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEMVYIVDNPNKNELNKIRSMLGQGKLVVYPTDTIYGIGVDINNIDAVKKVYMTKKRSYD
CEEEEEEECCCHHHHHHHHHHHCCCCEEEEECCCEEEEECCCCCHHHHHHHHHHHHCCCC
KPISICLHDITQVKEVAIVTDEIEHIINELLPGPYTLLLRKKSNIPDILTANTNIIGIRI
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCEEECCCCEEEEEE
PDNKITHSLTKDFPITSTSANLSNIQTPDNITDIKKQLGDNIDIYIDCGKKIKNQPSTII
CCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCEEEEEECCCCCCCCCCEEE
DLTQQNPKIIRQHKNNELINKILKIDLY
EECCCCHHHHHHCCCHHHHHHHHHHCCC
>Mature Secondary Structure
MEMVYIVDNPNKNELNKIRSMLGQGKLVVYPTDTIYGIGVDINNIDAVKKVYMTKKRSYD
CEEEEEEECCCHHHHHHHHHHHCCCCEEEEECCCEEEEECCCCCHHHHHHHHHHHHCCCC
KPISICLHDITQVKEVAIVTDEIEHIINELLPGPYTLLLRKKSNIPDILTANTNIIGIRI
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCEEECCCCEEEEEE
PDNKITHSLTKDFPITSTSANLSNIQTPDNITDIKKQLGDNIDIYIDCGKKIKNQPSTII
CCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCEEEEEECCCCCCCCCCEEE
DLTQQNPKIIRQHKNNELINKILKIDLY
EECCCCHHHHHHCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]