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The map label for this gene is ydjH [C]

Identifier: 84488901

GI number: 84488901

Start: 85516

End: 86460

Strand: Direct

Name: ydjH [C]

Synonym: Msp_0071

Alternate gene names: 84488901

Gene position: 85516-86460 (Clockwise)

Preceding gene: 84488900

Following gene: 84488902

Centisome position: 4.84

GC content: 27.62

Gene sequence:

>945_bases
ATGATGAAATTTGATATAATAGGATGGGGAGCATTAAATATTGATAGATTATGTCATGTTAATGAATTTGCACCATCTGA
TGGAGAAACATTTGTAAATTATGAAACAAAATCCTGTGGAGGATCAGCTGCTAATACAATTATTGGTATGGCAAAACTAG
GACTAAAAACTGGATACATTGGAAAGGTAGGTAATGATTCAAATGGTAAAATGATGCAAGATTATCTTGAATCACATAAT
GTGGATACTACTCATCTCATAAAAGGAAACGGTGAAACAGGAGAAGTAATAGGTTTTGTAGATAGTAGTGGTGATCGTAA
GTTATATGTAACTCCAAAAATAAATGACACTATTTCAAATTCTGAAATAAAAAGGGATTATATTAAAAACACTAAATTAT
TACACTTAACTTCATTTGTAGGATTAAATCCTGAAGATCCATCTATTGATACACAAATGGAATTATTAGATGAATTAAAG
GATGATGTAATTGTATCATTTGATCCGGGAATGTTATATGTAAATAAAGGACTTGATTTCATGAATAAACTAATATCTTA
CACAGATATTTTACTTATCAATGAAACAGAGTTATTATTAACTACAAATAAAAAAACATTACAAGAAGCTGTGGATGAAA
TATCACAAAAAGTAGATATTTTAGTAGTTAAATGTTCAACAAAAGGTTCTTTTATTAAAAAAGGTGATGAAGAATATAAT
ATTGGAATATTTGAAGTTGATGCTATTGATACAACTGGTGCAGGAGATGCATATAATGCAGGATTTTTATATGGTTTAAT
AAATAACTATACTCTTGAAGAATCTGGAATAATAGGTAGTTATATTGCAGCTCAATCAACAACAAAATCTGGTGCAACAG
AAGCAATACCATTTTCAAAAGATATATCAATTGAAAAAATAATACAAAATCTTAAAAATTATTAA

Upstream 100 bases:

>100_bases
TGGGGTAGAAGGTGTAATTAAAGTGTCTGCTGGTAATTATGGTGGAAATTTAGGTAAATATAAATTTAATTTAAAAGATG
TACTAGATTAGAGTTGAAGT

Downstream 100 bases:

>100_bases
TAACAAAAATATTTATTGTTATAAATTTATTATTTATTATATATATTATAGAATTCATAGAATTTATCAACTAGAAGGAG
AATAAAAATAATGATACATG

Product: ribokinase

Products: ADP; D-ribose 5-phosphate

Alternate protein names: NA

Number of amino acids: Translated: 314; Mature: 314

Protein sequence:

>314_residues
MMKFDIIGWGALNIDRLCHVNEFAPSDGETFVNYETKSCGGSAANTIIGMAKLGLKTGYIGKVGNDSNGKMMQDYLESHN
VDTTHLIKGNGETGEVIGFVDSSGDRKLYVTPKINDTISNSEIKRDYIKNTKLLHLTSFVGLNPEDPSIDTQMELLDELK
DDVIVSFDPGMLYVNKGLDFMNKLISYTDILLINETELLLTTNKKTLQEAVDEISQKVDILVVKCSTKGSFIKKGDEEYN
IGIFEVDAIDTTGAGDAYNAGFLYGLINNYTLEESGIIGSYIAAQSTTKSGATEAIPFSKDISIEKIIQNLKNY

Sequences:

>Translated_314_residues
MMKFDIIGWGALNIDRLCHVNEFAPSDGETFVNYETKSCGGSAANTIIGMAKLGLKTGYIGKVGNDSNGKMMQDYLESHN
VDTTHLIKGNGETGEVIGFVDSSGDRKLYVTPKINDTISNSEIKRDYIKNTKLLHLTSFVGLNPEDPSIDTQMELLDELK
DDVIVSFDPGMLYVNKGLDFMNKLISYTDILLINETELLLTTNKKTLQEAVDEISQKVDILVVKCSTKGSFIKKGDEEYN
IGIFEVDAIDTTGAGDAYNAGFLYGLINNYTLEESGIIGSYIAAQSTTKSGATEAIPFSKDISIEKIIQNLKNY
>Mature_314_residues
MMKFDIIGWGALNIDRLCHVNEFAPSDGETFVNYETKSCGGSAANTIIGMAKLGLKTGYIGKVGNDSNGKMMQDYLESHN
VDTTHLIKGNGETGEVIGFVDSSGDRKLYVTPKINDTISNSEIKRDYIKNTKLLHLTSFVGLNPEDPSIDTQMELLDELK
DDVIVSFDPGMLYVNKGLDFMNKLISYTDILLINETELLLTTNKKTLQEAVDEISQKVDILVVKCSTKGSFIKKGDEEYN
IGIFEVDAIDTTGAGDAYNAGFLYGLINNYTLEESGIIGSYIAAQSTTKSGATEAIPFSKDISIEKIIQNLKNY

Specific function: Unknown

COG id: COG0524

COG function: function code G; Sugar kinases, ribokinase family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the carbohydrate kinase pfkB family [H]

Homologues:

Organism=Escherichia coli, GI87081971, Length=266, Percent_Identity=29.6992481203008, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1790193, Length=304, Percent_Identity=24.3421052631579, Blast_Score=89, Evalue=5e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011611
- InterPro:   IPR002173 [H]

Pfam domain/function: PF00294 PfkB [H]

EC number: 2.7.1.15

Molecular weight: Translated: 34471; Mature: 34471

Theoretical pI: Translated: 4.41; Mature: 4.41

Prosite motif: PS00584 PFKB_KINASES_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMKFDIIGWGALNIDRLCHVNEFAPSDGETFVNYETKSCGGSAANTIIGMAKLGLKTGYI
CEEEEEEECCCCCHHHHEECCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCC
GKVGNDSNGKMMQDYLESHNVDTTHLIKGNGETGEVIGFVDSSGDRKLYVTPKINDTISN
CCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCEEEEEEECCCCCEEEECCCCCCCCCC
SEIKRDYIKNTKLLHLTSFVGLNPEDPSIDTQMELLDELKDDVIVSFDPGMLYVNKGLDF
HHHHHHHHCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHCCCEEEEECCCEEEEECCHHH
MNKLISYTDILLINETELLLTTNKKTLQEAVDEISQKVDILVVKCSTKGSFIKKGDEEYN
HHHHHHHHEEEEECCCEEEEECCHHHHHHHHHHHHCCEEEEEEEECCCCCHHHCCCCCEE
IGIFEVDAIDTTGAGDAYNAGFLYGLINNYTLEESGIIGSYIAAQSTTKSGATEAIPFSK
EEEEEEECCCCCCCCCCCCCCEEEEECCCCEECCCCCEEHHHHHCCCCCCCCCCCCCCCC
DISIEKIIQNLKNY
CCCHHHHHHHHHCC
>Mature Secondary Structure
MMKFDIIGWGALNIDRLCHVNEFAPSDGETFVNYETKSCGGSAANTIIGMAKLGLKTGYI
CEEEEEEECCCCCHHHHEECCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCC
GKVGNDSNGKMMQDYLESHNVDTTHLIKGNGETGEVIGFVDSSGDRKLYVTPKINDTISN
CCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCEEEEEEECCCCCEEEECCCCCCCCCC
SEIKRDYIKNTKLLHLTSFVGLNPEDPSIDTQMELLDELKDDVIVSFDPGMLYVNKGLDF
HHHHHHHHCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHCCCEEEEECCCEEEEECCHHH
MNKLISYTDILLINETELLLTTNKKTLQEAVDEISQKVDILVVKCSTKGSFIKKGDEEYN
HHHHHHHHEEEEECCCEEEEECCHHHHHHHHHHHHCCEEEEEEEECCCCCHHHCCCCCEE
IGIFEVDAIDTTGAGDAYNAGFLYGLINNYTLEESGIIGSYIAAQSTTKSGATEAIPFSK
EEEEEEECCCCCCCCCCCCCCEEEEECCCCEECCCCCEEHHHHHCCCCCCCCCCCCCCCC
DISIEKIIQNLKNY
CCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; D-ribose

Specific reaction: ATP + D-ribose = ADP + D-ribose 5-phosphate

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9389475 [H]