Click here to switch to the map view.

The map label for this gene is ydhO [H]

Identifier: 83721646

GI number: 83721646

Start: 2459349

End: 2460572

Strand: Reverse

Name: ydhO [H]

Synonym: BTH_I2186

Alternate gene names: 83721646

Gene position: 2460572-2459349 (Counterclockwise)

Preceding gene: 83720282

Following gene: 83719832

Centisome position: 64.6

GC content: 72.3

Gene sequence:

>1224_bases
TTGCGTCTTTCGCTGTCCGTTCTAGTGATCTCGCTGCTCGCGGCCTGTTCGAGCGCGCCGCAGAAGTCGGCGCGCTCGTC
ATCCGGCATGGCGATCACCGCGCCGCGCGCGTATGCGCCGCCGCGCGGCTTCCCGAACTTCGTCGACCATAGCGTCGGCC
GCGAGGAAATCTCGATCCAGGCGATGAGCCTCGTCGGCGTTCCGTACCGTTGGGGCGGCAACACGCCTGACAGCGGTTTC
GATTGCAGCGGGCTCGTGCGCTATGTCGTCGATCGCGCGGCGAGCGTCAACCTGCCCCGCACGACGGCCGACATGAGCTC
GGTCGGCGAATCGATCGAGCCCGACGGCATCGCGCCCGGCGATCTGATCTTCTTCAATACGTCCGGGCGGCCGCATTCGC
ACGTCGGCATCTACGTCGGCAAGCTACGCTTCGTGAACGCGCCGTCCACGGGCGGCACCGTGCGGCTCGACTACCTGACG
AACCCGTATTGGGCGAAGCGCTTCGATGGAATCCGGCGCGTCGCGGCGCCGAAGGCAAAGCCGACGCCGTTCGATGCGCC
GACCTACCAGGCGAGCCGGCAGCCGGAACCCGCACCGCGCGTGAGCCCCTCGGGTGCGACGGCAGCCTATGCGGCGGCCA
ATGCTCCGACGGCGCCCGCCACGCCGGGCTATGCGGCGAACCCGGCAACGCCGGCTCCGGCACGCGCCGCCACGCCGGGC
GCGCCGTCAACGGCGCCGGCGTACGCCGCCAATTCCGCCGCAGCCCTGGCGTCGGTCACAGCGCCGACCGCCGCCGCACC
ACATTTACAGAACGTGCCGCGCGCCGCCACGGCGGCGACTGTCGCAACTGCTGCCGCCGCTGCCGATCCGTACGAACCGC
CGCCGTCCGCGATGTCCGCGGCGCAGCGGCAAGCGCAGGCGGCCGGAGCGAGTTCGCCCGCGCTCGCGTCCGGCGATTTG
GGCGGCGCGGCGCGCCCGGCTCCGTTGCCCATCGGCGGCACGACGAGCGTCGCCGGTGCGGCGCCGGCCGATCCGATCGA
CGCTGCCGCGGACGCATTCGAGCCACCTCCGCCCACGGCACGCGCTGCCGCCCGCCAGGCGCAGCTCGCCGCGCCCGGCA
ACGTGCAGATCCTGCGCGCGTCGACGGCAAGCGGCCCGGCGAATGCCGCCGCGACAGGCACGAACGACGACCCGATCGCC
CGCTTCGCAAACGGCAGCTACTGA

Upstream 100 bases:

>100_bases
TTCTCAAGAATTCTTGCGAAAGCCCCGCTGGACGCACTACTATCGCGATTAACCGTTGTCATACGATTGGCGAGCGCAGC
GCGTTCGCCCGCCTCTCATG

Downstream 100 bases:

>100_bases
CGAACTGCCGCCAGGCCCATCCCTCCATCCTGCACGGGTGCGGCAACGAACGCGGCATCGCGCGCCACGGCACTCGGCCG
ACGCCTCTCCGCAGCAACGA

Product: NLP/P60 family lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 407; Mature: 407

Protein sequence:

>407_residues
MRLSLSVLVISLLAACSSAPQKSARSSSGMAITAPRAYAPPRGFPNFVDHSVGREEISIQAMSLVGVPYRWGGNTPDSGF
DCSGLVRYVVDRAASVNLPRTTADMSSVGESIEPDGIAPGDLIFFNTSGRPHSHVGIYVGKLRFVNAPSTGGTVRLDYLT
NPYWAKRFDGIRRVAAPKAKPTPFDAPTYQASRQPEPAPRVSPSGATAAYAAANAPTAPATPGYAANPATPAPARAATPG
APSTAPAYAANSAAALASVTAPTAAAPHLQNVPRAATAATVATAAAAADPYEPPPSAMSAAQRQAQAAGASSPALASGDL
GGAARPAPLPIGGTTSVAGAAPADPIDAAADAFEPPPPTARAAARQAQLAAPGNVQILRASTASGPANAAATGTNDDPIA
RFANGSY

Sequences:

>Translated_407_residues
MRLSLSVLVISLLAACSSAPQKSARSSSGMAITAPRAYAPPRGFPNFVDHSVGREEISIQAMSLVGVPYRWGGNTPDSGF
DCSGLVRYVVDRAASVNLPRTTADMSSVGESIEPDGIAPGDLIFFNTSGRPHSHVGIYVGKLRFVNAPSTGGTVRLDYLT
NPYWAKRFDGIRRVAAPKAKPTPFDAPTYQASRQPEPAPRVSPSGATAAYAAANAPTAPATPGYAANPATPAPARAATPG
APSTAPAYAANSAAALASVTAPTAAAPHLQNVPRAATAATVATAAAAADPYEPPPSAMSAAQRQAQAAGASSPALASGDL
GGAARPAPLPIGGTTSVAGAAPADPIDAAADAFEPPPPTARAAARQAQLAAPGNVQILRASTASGPANAAATGTNDDPIA
RFANGSY
>Mature_407_residues
MRLSLSVLVISLLAACSSAPQKSARSSSGMAITAPRAYAPPRGFPNFVDHSVGREEISIQAMSLVGVPYRWGGNTPDSGF
DCSGLVRYVVDRAASVNLPRTTADMSSVGESIEPDGIAPGDLIFFNTSGRPHSHVGIYVGKLRFVNAPSTGGTVRLDYLT
NPYWAKRFDGIRRVAAPKAKPTPFDAPTYQASRQPEPAPRVSPSGATAAYAAANAPTAPATPGYAANPATPAPARAATPG
APSTAPAYAANSAAALASVTAPTAAAPHLQNVPRAATAATVATAAAAADPYEPPPSAMSAAQRQAQAAGASSPALASGDL
GGAARPAPLPIGGTTSVAGAAPADPIDAAADAFEPPPPTARAAARQAQLAAPGNVQILRASTASGPANAAATGTNDDPIA
RFANGSY

Specific function: Unknown

COG id: COG0791

COG function: function code M; Cell wall-associated hydrolases (invasion-associated proteins)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nlpC/p60 family [H]

Homologues:

Organism=Escherichia coli, GI1787944, Length=122, Percent_Identity=41.8032786885246, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI1786421, Length=134, Percent_Identity=36.5671641791045, Blast_Score=105, Evalue=5e-24,
Organism=Escherichia coli, GI1788501, Length=135, Percent_Identity=35.5555555555556, Blast_Score=92, Evalue=8e-20,
Organism=Escherichia coli, GI1788001, Length=119, Percent_Identity=41.1764705882353, Blast_Score=89, Evalue=5e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000064 [H]

Pfam domain/function: PF00877 NLPC_P60 [H]

EC number: NA

Molecular weight: Translated: 40687; Mature: 40687

Theoretical pI: Translated: 9.60; Mature: 9.60

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLSLSVLVISLLAACSSAPQKSARSSSGMAITAPRAYAPPRGFPNFVDHSVGREEISIQ
CCCHHHHHHHHHHHHHCCCHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHCCHHHHEEE
AMSLVGVPYRWGGNTPDSGFDCSGLVRYVVDRAASVNLPRTTADMSSVGESIEPDGIAPG
EEEEECCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCC
DLIFFNTSGRPHSHVGIYVGKLRFVNAPSTGGTVRLDYLTNPYWAKRFDGIRRVAAPKAK
CEEEECCCCCCCCEEEEEEEEEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCC
PTPFDAPTYQASRQPEPAPRVSPSGATAAYAAANAPTAPATPGYAANPATPAPARAATPG
CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC
APSTAPAYAANSAAALASVTAPTAAAPHLQNVPRAATAATVATAAAAADPYEPPPSAMSA
CCCCCCCHHCCCHHHHHHHCCCCCCCCHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHH
AQRQAQAAGASSPALASGDLGGAARPAPLPIGGTTSVAGAAPADPIDAAADAFEPPPPTA
HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCHH
RAAARQAQLAAPGNVQILRASTASGPANAAATGTNDDPIARFANGSY
HHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHCCCCC
>Mature Secondary Structure
MRLSLSVLVISLLAACSSAPQKSARSSSGMAITAPRAYAPPRGFPNFVDHSVGREEISIQ
CCCHHHHHHHHHHHHHCCCHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHCCHHHHEEE
AMSLVGVPYRWGGNTPDSGFDCSGLVRYVVDRAASVNLPRTTADMSSVGESIEPDGIAPG
EEEEECCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCC
DLIFFNTSGRPHSHVGIYVGKLRFVNAPSTGGTVRLDYLTNPYWAKRFDGIRRVAAPKAK
CEEEECCCCCCCCEEEEEEEEEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCC
PTPFDAPTYQASRQPEPAPRVSPSGATAAYAAANAPTAPATPGYAANPATPAPARAATPG
CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC
APSTAPAYAANSAAALASVTAPTAAAPHLQNVPRAATAATVATAAAAADPYEPPPSAMSA
CCCCCCCHHCCCHHHHHHHCCCCCCCCHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHH
AQRQAQAAGASSPALASGDLGGAARPAPLPIGGTTSVAGAAPADPIDAAADAFEPPPPTA
HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCHH
RAAARQAQLAAPGNVQILRASTASGPANAAATGTNDDPIARFANGSY
HHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]