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The map label for this gene is rci [H]

Identifier: 83721635

GI number: 83721635

Start: 3733953

End: 3734393

Strand: Direct

Name: rci [H]

Synonym: BTH_I3278

Alternate gene names: 83721635

Gene position: 3733953-3734393 (Clockwise)

Preceding gene: 83720726

Following gene: 83718457

Centisome position: 98.02

GC content: 61.9

Gene sequence:

>441_bases
ATGCGTGCAGGTGAAATCGTGAAGCTTCGCTGGGAACAAATCGACCTCGCGAATCACACCATCCGCCTGAACCTCACAAA
GAACGGGCATGCGCGGTCGGTGCCGCTGTCCGAGCGGGCAGAGGCAGCGATTCGGGCGCTTCCCCGGTCAATTCATGGCG
GGCGGTTGACGTCGTTCTACGATTCGAGGGGACTCAGCGCAGCATTTCGTCGGGCCTGTGAACGGGCGGGCGTTGTCGGG
CTGCGTTTTCATGACTTGCGGCACGAAGCTGCATCTCGGCTCGCGCCGCACATGCCTGCGTCCACCCTGGCCAAGGTCAT
GGGTTGGAAGACACTGCAGATGGCAATGCGGTATTACAACCCGACGGACCAGGAACTGGTAACTGCCGTCCGGAAAGTGA
GCGCCCCATCCGGCCCCGACCTGCGCGCTTCGGTGAATTGA

Upstream 100 bases:

>100_bases
TGCTTACAGATTTGTTGCTGCATTTTTGCTGCACTCCTGCTGCAAACATCAACGGTCTGCGACACTGTCTTTCTGTATCG
TCCTTGCCATCGAGACGGGG

Downstream 100 bases:

>100_bases
CGGCCCCCTCTACCGCAGTCAAGGTCGCGGCCGGGCGCAGGCCTCAGAGAGAAGACCGGGCATCGAGCATGACGCCCGGT
CTTGAGTAAAAAAATTCCTA

Product: phage integrase family site specific recombinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 146; Mature: 146

Protein sequence:

>146_residues
MRAGEIVKLRWEQIDLANHTIRLNLTKNGHARSVPLSERAEAAIRALPRSIHGGRLTSFYDSRGLSAAFRRACERAGVVG
LRFHDLRHEAASRLAPHMPASTLAKVMGWKTLQMAMRYYNPTDQELVTAVRKVSAPSGPDLRASVN

Sequences:

>Translated_146_residues
MRAGEIVKLRWEQIDLANHTIRLNLTKNGHARSVPLSERAEAAIRALPRSIHGGRLTSFYDSRGLSAAFRRACERAGVVG
LRFHDLRHEAASRLAPHMPASTLAKVMGWKTLQMAMRYYNPTDQELVTAVRKVSAPSGPDLRASVN
>Mature_146_residues
MRAGEIVKLRWEQIDLANHTIRLNLTKNGHARSVPLSERAEAAIRALPRSIHGGRLTSFYDSRGLSAAFRRACERAGVVG
LRFHDLRHEAASRLAPHMPASTLAKVMGWKTLQMAMRYYNPTDQELVTAVRKVSAPSGPDLRASVN

Specific function: Shufflon-specific DNA recombinase [H]

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 16226; Mature: 16226

Theoretical pI: Translated: 11.56; Mature: 11.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRAGEIVKLRWEQIDLANHTIRLNLTKNGHARSVPLSERAEAAIRALPRSIHGGRLTSFY
CCCCCEEEEEHHEEECCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHH
DSRGLSAAFRRACERAGVVGLRFHDLRHEAASRLAPHMPASTLAKVMGWKTLQMAMRYYN
HCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCHHHHHHHHHHCC
PTDQELVTAVRKVSAPSGPDLRASVN
CCHHHHHHHHHHHCCCCCCCCEECCC
>Mature Secondary Structure
MRAGEIVKLRWEQIDLANHTIRLNLTKNGHARSVPLSERAEAAIRALPRSIHGGRLTSFY
CCCCCEEEEEHHEEECCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHH
DSRGLSAAFRRACERAGVVGLRFHDLRHEAASRLAPHMPASTLAKVMGWKTLQMAMRYYN
HCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCHHHHHHHHHHCC
PTDQELVTAVRKVSAPSGPDLRASVN
CCHHHHHHHHHHHCCCCCCCCEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3065610; 3029698 [H]