| Definition | Burkholderia thailandensis E264 chromosome chromosome I, complete sequence. |
|---|---|
| Accession | NC_007651 |
| Length | 3,809,201 |
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The map label for this gene is fadB [H]
Identifier: 83721623
GI number: 83721623
Start: 2420481
End: 2422565
Strand: Direct
Name: fadB [H]
Synonym: BTH_I2142
Alternate gene names: 83721623
Gene position: 2420481-2422565 (Clockwise)
Preceding gene: 83720533
Following gene: 83721021
Centisome position: 63.54
GC content: 68.78
Gene sequence:
>2085_bases ATGGCAGTGGACTACACGACTCGCGACGGCGTCGCCGTCATCACGCTCAACAATCCGCCCGTCAACGGCCTCGGCCTGTC GACGCGGCTCGGCATCATGGAAGGGCTCGAACGCGCGCAGCGCGACCCGGCCATCGCGGCGATCGTGCTCGCGGGCGCGG GCCGCGCGTTCTCGGGCGGCGCGGACATCACCGAATTCAACACGCCGAAGGCGCTGCAGGAACCGACGCTGCACACCGTG ATCGACGCGGTGGAGGCGAGCGGCAAGCCCGTCGTCGTCGCGATCCACAGCGTCGCGATGGGCGGCGGTCTCGAGCTCGC GCTCGGCGCGCATTACCGCGTCGCGTCGCCCGGCGCGCAGATCGCGCTGCCGGAGGTGAAGCTCGGCCTGTTGCCCGGCG CGGGCGGCACGCAGCGCCTGCCGCGCGCGGTTGGCCTCGAAACCGCGCTGAACATGATCGTCTCCGGCGCGCCCGTGCCG TCCGAGCAACTCGCGAAAAGCGGCCTCTTCGACGCGTTCGTCGAAGGCGACCTGCTCGACGCGGCCGTCGCGTTCGCGCG CAAGGCCGGCGCGGCGAGCGGCCCGCATCCGCGCGTGCGCGATCGCGAGATCGTCCATGACAACGCGGCGGGCTTCATCC AGTTCGCGCGCAACAGCGTGAAGGCCGTCGCGCAGCACTATCCGGCGCCGCACAAGTGCATCGACGCGATCGAGGCGGGC GTGCTGCAAGGCTTCGGCAAGGGACTCGCGTTCGAGCGCGACTGCTTCGTCGCGCTCGTGCAGACGCCCGAGAGCCGCGC GCTGCGCCACGCGTTCTTCGGCGAGCGCGCGGCGAGCAAGATTCCCGACGTGCCGGCCGACACACCCGTGCGCGAGATCA AGTCGGTCGCGGTGATCGGCGCGGGCACGATGGGCGGCGGGATCGCGATGAATTTCCTGAACGCGGGGCTGCCCGTCACG TTGCTCGAGACCAAGCAGGAAGCGCTCGATCGCGGGCTCGCGACGATCCGCAGGAACTACGACGCGCAGGTGAAGAAGGG CAAGCTCACGCAGGAAAAGCTCGACGCGCGGATGGCGCTCATCCGCCCGACGCTCGCATACGACGACCTGAAGGACGCCG ATCTCGTGATCGAGGCGGTGTTCGAGGAGCTCGGCGTGAAGGAGCAGGTGTTCAGGCGGCTCGACGAGGTGGCGAAGCCG GGCGCGATCCTCGCGTCGAACACGTCGACGCTCGACGTGAACAAGATCGCCGCGTTCACGAAGCGCCCGCAGGACGTCGT CGGCATGCACTTCTTCAGCCCGGCGAACGTGATGAAGCTGCTCGAAGTGGTGCGCGGCGGGCAGACCGCGAAGGACGTGC TCGCCACCGTGATGCAGCTCGCGAAGAAGATCCGCAAGACGGCGGTCGTGTCCGGCGTGTGCGACGGCTTCATCGGCAAC CGGATGGTCGAGCAGTACATCCGCCAGGCGCTCTTCATGCTCGAAGAGGGCGCGCTGCCCGCGCAGGTCGACCGCGCGAT CGAGACCTTCGGTTTCGCGATGGGGCCGTTCCGGATGAGCGACCTCGCCGGCAACGACATCGGTTGGGCGATCCGCAAGC GCCGCTACGTCGAGCAGCCGGATCTGCACTACTCGAAGATCGCCGATCGCCTGTGCGAGCAGGGCCGCTTCGGCCAGAAG ACGGGCGCGGGCTGGTACGACTACGTGCCGGGCGAGCGCCGGGCGAAACCGTCGAAGCTCGTCGACGAGATGATCGTCGC GTATTCGAGCGAGCGCGGGCTCGAGCGGCGCGAGATCGGCGACGACGAGATCGTCGAGCGGCTCGTCTACTCGCTCGTCA ACGAGGGCGCGAAGATCCTTGAGGAGAAGATCGCGTCGAAGGCGTCCGACATCGACATGGTGTACCTGACGGGCTACGGC TTTCCGCTCTGGCGCGGCGGCCCGATGCTGTACGCGGACACGGTCGGCCTCTACAACGTCGAGCGCGCGATGCGCGGCTA TGCCCAGCGCGCGAACGGCGATGCGTGGCAGATCGCGCCTTCGATCGTCGAGCTCGCGAAAAGCGGGCGCGGGTTCAACG CGTGA
Upstream 100 bases:
>100_bases ACGGCGCATCGTTCGCCCGGCAATGTCGCCGTTGGCGGACAATGACCGCATCACAGCTGGCGCCGCCGCACCGGCCGCGC ATACGCATGGAGGCAGGCAG
Downstream 100 bases:
>100_bases CGCGCGGCCGCGTCGCCCATTGACAGAGCATCACGATGCAGCGCACCGACGATGTCCTTCTCGTGATCGACGTGCAGAAC GATTTCATGCCGGGCGGCGC
Product: fatty oxidation complex subunit alpha
Products: NA
Alternate protein names: Enoyl-CoA hydratase/Delta(3)-cis-Delta(2)-trans-enoyl-CoA isomerase/3-hydroxybutyryl-CoA epimerase; 3-hydroxyacyl-CoA dehydrogenase [H]
Number of amino acids: Translated: 694; Mature: 693
Protein sequence:
>694_residues MAVDYTTRDGVAVITLNNPPVNGLGLSTRLGIMEGLERAQRDPAIAAIVLAGAGRAFSGGADITEFNTPKALQEPTLHTV IDAVEASGKPVVVAIHSVAMGGGLELALGAHYRVASPGAQIALPEVKLGLLPGAGGTQRLPRAVGLETALNMIVSGAPVP SEQLAKSGLFDAFVEGDLLDAAVAFARKAGAASGPHPRVRDREIVHDNAAGFIQFARNSVKAVAQHYPAPHKCIDAIEAG VLQGFGKGLAFERDCFVALVQTPESRALRHAFFGERAASKIPDVPADTPVREIKSVAVIGAGTMGGGIAMNFLNAGLPVT LLETKQEALDRGLATIRRNYDAQVKKGKLTQEKLDARMALIRPTLAYDDLKDADLVIEAVFEELGVKEQVFRRLDEVAKP GAILASNTSTLDVNKIAAFTKRPQDVVGMHFFSPANVMKLLEVVRGGQTAKDVLATVMQLAKKIRKTAVVSGVCDGFIGN RMVEQYIRQALFMLEEGALPAQVDRAIETFGFAMGPFRMSDLAGNDIGWAIRKRRYVEQPDLHYSKIADRLCEQGRFGQK TGAGWYDYVPGERRAKPSKLVDEMIVAYSSERGLERREIGDDEIVERLVYSLVNEGAKILEEKIASKASDIDMVYLTGYG FPLWRGGPMLYADTVGLYNVERAMRGYAQRANGDAWQIAPSIVELAKSGRGFNA
Sequences:
>Translated_694_residues MAVDYTTRDGVAVITLNNPPVNGLGLSTRLGIMEGLERAQRDPAIAAIVLAGAGRAFSGGADITEFNTPKALQEPTLHTV IDAVEASGKPVVVAIHSVAMGGGLELALGAHYRVASPGAQIALPEVKLGLLPGAGGTQRLPRAVGLETALNMIVSGAPVP SEQLAKSGLFDAFVEGDLLDAAVAFARKAGAASGPHPRVRDREIVHDNAAGFIQFARNSVKAVAQHYPAPHKCIDAIEAG VLQGFGKGLAFERDCFVALVQTPESRALRHAFFGERAASKIPDVPADTPVREIKSVAVIGAGTMGGGIAMNFLNAGLPVT LLETKQEALDRGLATIRRNYDAQVKKGKLTQEKLDARMALIRPTLAYDDLKDADLVIEAVFEELGVKEQVFRRLDEVAKP GAILASNTSTLDVNKIAAFTKRPQDVVGMHFFSPANVMKLLEVVRGGQTAKDVLATVMQLAKKIRKTAVVSGVCDGFIGN RMVEQYIRQALFMLEEGALPAQVDRAIETFGFAMGPFRMSDLAGNDIGWAIRKRRYVEQPDLHYSKIADRLCEQGRFGQK TGAGWYDYVPGERRAKPSKLVDEMIVAYSSERGLERREIGDDEIVERLVYSLVNEGAKILEEKIASKASDIDMVYLTGYG FPLWRGGPMLYADTVGLYNVERAMRGYAQRANGDAWQIAPSIVELAKSGRGFNA >Mature_693_residues AVDYTTRDGVAVITLNNPPVNGLGLSTRLGIMEGLERAQRDPAIAAIVLAGAGRAFSGGADITEFNTPKALQEPTLHTVI DAVEASGKPVVVAIHSVAMGGGLELALGAHYRVASPGAQIALPEVKLGLLPGAGGTQRLPRAVGLETALNMIVSGAPVPS EQLAKSGLFDAFVEGDLLDAAVAFARKAGAASGPHPRVRDREIVHDNAAGFIQFARNSVKAVAQHYPAPHKCIDAIEAGV LQGFGKGLAFERDCFVALVQTPESRALRHAFFGERAASKIPDVPADTPVREIKSVAVIGAGTMGGGIAMNFLNAGLPVTL LETKQEALDRGLATIRRNYDAQVKKGKLTQEKLDARMALIRPTLAYDDLKDADLVIEAVFEELGVKEQVFRRLDEVAKPG AILASNTSTLDVNKIAAFTKRPQDVVGMHFFSPANVMKLLEVVRGGQTAKDVLATVMQLAKKIRKTAVVSGVCDGFIGNR MVEQYIRQALFMLEEGALPAQVDRAIETFGFAMGPFRMSDLAGNDIGWAIRKRRYVEQPDLHYSKIADRLCEQGRFGQKT GAGWYDYVPGERRAKPSKLVDEMIVAYSSERGLERREIGDDEIVERLVYSLVNEGAKILEEKIASKASDIDMVYLTGYGF PLWRGGPMLYADTVGLYNVERAMRGYAQRANGDAWQIAPSIVELAKSGRGFNA
Specific function: Catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA. Also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities [H]
COG id: COG1250
COG function: function code I; 3-hydroxyacyl-CoA dehydrogenase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: In the C-terminal section; belongs to the 3- hydroxyacyl-CoA dehydrogenase family [H]
Homologues:
Organism=Homo sapiens, GI68989263, Length=711, Percent_Identity=43.1786216596343, Blast_Score=517, Evalue=1e-146, Organism=Homo sapiens, GI261878539, Length=616, Percent_Identity=43.3441558441558, Blast_Score=454, Evalue=1e-127, Organism=Homo sapiens, GI20127408, Length=704, Percent_Identity=32.1022727272727, Blast_Score=323, Evalue=5e-88, Organism=Homo sapiens, GI296179429, Length=290, Percent_Identity=33.448275862069, Blast_Score=143, Evalue=6e-34, Organism=Homo sapiens, GI296179427, Length=307, Percent_Identity=31.5960912052117, Blast_Score=135, Evalue=1e-31, Organism=Homo sapiens, GI194097323, Length=192, Percent_Identity=35.9375, Blast_Score=101, Evalue=2e-21, Organism=Homo sapiens, GI37594471, Length=176, Percent_Identity=32.3863636363636, Blast_Score=84, Evalue=6e-16, Organism=Homo sapiens, GI37594469, Length=176, Percent_Identity=32.3863636363636, Blast_Score=83, Evalue=7e-16, Organism=Homo sapiens, GI115430219, Length=215, Percent_Identity=27.4418604651163, Blast_Score=74, Evalue=6e-13, Organism=Escherichia coli, GI1788682, Length=701, Percent_Identity=33.6661911554922, Blast_Score=316, Evalue=3e-87, Organism=Escherichia coli, GI1790281, Length=672, Percent_Identity=32.5892857142857, Blast_Score=308, Evalue=6e-85, Organism=Escherichia coli, GI1787661, Length=352, Percent_Identity=36.3636363636364, Blast_Score=177, Evalue=1e-45, Organism=Escherichia coli, GI1787659, Length=182, Percent_Identity=36.2637362637363, Blast_Score=102, Evalue=8e-23, Organism=Escherichia coli, GI221142681, Length=241, Percent_Identity=30.2904564315353, Blast_Score=93, Evalue=5e-20, Organism=Escherichia coli, GI1787660, Length=188, Percent_Identity=31.9148936170213, Blast_Score=68, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17558304, Length=729, Percent_Identity=32.9218106995885, Blast_Score=313, Evalue=2e-85, Organism=Caenorhabditis elegans, GI17508953, Length=730, Percent_Identity=33.1506849315069, Blast_Score=305, Evalue=4e-83, Organism=Caenorhabditis elegans, GI17508951, Length=730, Percent_Identity=33.1506849315069, Blast_Score=305, Evalue=4e-83, Organism=Caenorhabditis elegans, GI25144276, Length=615, Percent_Identity=34.3089430894309, Blast_Score=270, Evalue=3e-72, Organism=Caenorhabditis elegans, GI71985923, Length=377, Percent_Identity=33.6870026525199, Blast_Score=244, Evalue=1e-64, Organism=Caenorhabditis elegans, GI71985930, Length=373, Percent_Identity=31.3672922252011, Blast_Score=231, Evalue=1e-60, Organism=Caenorhabditis elegans, GI17553560, Length=296, Percent_Identity=34.1216216216216, Blast_Score=152, Evalue=5e-37, Organism=Caenorhabditis elegans, GI17549919, Length=295, Percent_Identity=34.2372881355932, Blast_Score=152, Evalue=8e-37, Organism=Caenorhabditis elegans, GI17563036, Length=291, Percent_Identity=31.6151202749141, Blast_Score=132, Evalue=8e-31, Organism=Caenorhabditis elegans, GI17540714, Length=187, Percent_Identity=35.2941176470588, Blast_Score=96, Evalue=5e-20, Organism=Caenorhabditis elegans, GI25145438, Length=164, Percent_Identity=35.9756097560976, Blast_Score=96, Evalue=6e-20, Organism=Caenorhabditis elegans, GI17554946, Length=272, Percent_Identity=30.1470588235294, Blast_Score=93, Evalue=4e-19, Organism=Caenorhabditis elegans, GI17560910, Length=214, Percent_Identity=31.7757009345794, Blast_Score=83, Evalue=4e-16, Organism=Saccharomyces cerevisiae, GI6320241, Length=209, Percent_Identity=26.3157894736842, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI24583077, Length=718, Percent_Identity=31.7548746518106, Blast_Score=315, Evalue=7e-86, Organism=Drosophila melanogaster, GI24583079, Length=718, Percent_Identity=31.7548746518106, Blast_Score=315, Evalue=7e-86, Organism=Drosophila melanogaster, GI19921000, Length=718, Percent_Identity=31.7548746518106, Blast_Score=314, Evalue=1e-85, Organism=Drosophila melanogaster, GI20129971, Length=272, Percent_Identity=31.6176470588235, Blast_Score=108, Evalue=1e-23, Organism=Drosophila melanogaster, GI24653477, Length=272, Percent_Identity=31.6176470588235, Blast_Score=108, Evalue=1e-23, Organism=Drosophila melanogaster, GI24653139, Length=157, Percent_Identity=35.031847133758, Blast_Score=75, Evalue=2e-13, Organism=Drosophila melanogaster, GI24583165, Length=194, Percent_Identity=28.8659793814433, Blast_Score=68, Evalue=2e-11, Organism=Drosophila melanogaster, GI45549573, Length=257, Percent_Identity=27.2373540856031, Blast_Score=67, Evalue=3e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006180 - InterPro: IPR006176 - InterPro: IPR006108 - InterPro: IPR008927 - InterPro: IPR001753 - InterPro: IPR013328 - InterPro: IPR012799 - InterPro: IPR016040 [H]
Pfam domain/function: PF00725 3HCDH; PF02737 3HCDH_N; PF00378 ECH [H]
EC number: =4.2.1.17; =5.1.2.3; =5.3.3.8; =1.1.1.35 [H]
Molecular weight: Translated: 74662; Mature: 74531
Theoretical pI: Translated: 7.65; Mature: 7.65
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAVDYTTRDGVAVITLNNPPVNGLGLSTRLGIMEGLERAQRDPAIAAIVLAGAGRAFSGG CCCCEECCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCC ADITEFNTPKALQEPTLHTVIDAVEASGKPVVVAIHSVAMGGGLELALGAHYRVASPGAQ CCCCCCCCCHHHHCCHHHHHHHHHHCCCCEEEEEEEHHHCCCCCEEEECCCEEECCCCCC IALPEVKLGLLPGAGGTQRLPRAVGLETALNMIVSGAPVPSEQLAKSGLFDAFVEGDLLD EECCCEEEEECCCCCCHHHCHHHHHHHHHHHHHHCCCCCCHHHHHHCCHHHHHHCCHHHH AAVAFARKAGAASGPHPRVRDREIVHDNAAGFIQFARNSVKAVAQHYPAPHKCIDAIEAG HHHHHHHHCCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH VLQGFGKGLAFERDCFVALVQTPESRALRHAFFGERAASKIPDVPADTPVREIKSVAVIG HHHHHCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHEEE AGTMGGGIAMNFLNAGLPVTLLETKQEALDRGLATIRRNYDAQVKKGKLTQEKLDARMAL CCCCCCHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHCCCCHHHCCCCCHHHHHHHHHH IRPTLAYDDLKDADLVIEAVFEELGVKEQVFRRLDEVAKPGAILASNTSTLDVNKIAAFT HHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHH KRPQDVVGMHFFSPANVMKLLEVVRGGQTAKDVLATVMQLAKKIRKTAVVSGVCDGFIGN CCCHHHHCCHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RMVEQYIRQALFMLEEGALPAQVDRAIETFGFAMGPFRMSDLAGNDIGWAIRKRRYVEQP HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHCCCCCHHHHHHHHHCCCCC DLHYSKIADRLCEQGRFGQKTGAGWYDYVPGERRAKPSKLVDEMIVAYSSERGLERREIG CCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHCC DDEIVERLVYSLVNEGAKILEEKIASKASDIDMVYLTGYGFPLWRGGPMLYADTVGLYNV CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCEEEECCCCHHHH ERAMRGYAQRANGDAWQIAPSIVELAKSGRGFNA HHHHHHHHHHCCCCCEEHHHHHHHHHHCCCCCCC >Mature Secondary Structure AVDYTTRDGVAVITLNNPPVNGLGLSTRLGIMEGLERAQRDPAIAAIVLAGAGRAFSGG CCCEECCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCC ADITEFNTPKALQEPTLHTVIDAVEASGKPVVVAIHSVAMGGGLELALGAHYRVASPGAQ CCCCCCCCCHHHHCCHHHHHHHHHHCCCCEEEEEEEHHHCCCCCEEEECCCEEECCCCCC IALPEVKLGLLPGAGGTQRLPRAVGLETALNMIVSGAPVPSEQLAKSGLFDAFVEGDLLD EECCCEEEEECCCCCCHHHCHHHHHHHHHHHHHHCCCCCCHHHHHHCCHHHHHHCCHHHH AAVAFARKAGAASGPHPRVRDREIVHDNAAGFIQFARNSVKAVAQHYPAPHKCIDAIEAG HHHHHHHHCCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH VLQGFGKGLAFERDCFVALVQTPESRALRHAFFGERAASKIPDVPADTPVREIKSVAVIG HHHHHCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHEEE AGTMGGGIAMNFLNAGLPVTLLETKQEALDRGLATIRRNYDAQVKKGKLTQEKLDARMAL CCCCCCHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHCCCCHHHCCCCCHHHHHHHHHH IRPTLAYDDLKDADLVIEAVFEELGVKEQVFRRLDEVAKPGAILASNTSTLDVNKIAAFT HHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHH KRPQDVVGMHFFSPANVMKLLEVVRGGQTAKDVLATVMQLAKKIRKTAVVSGVCDGFIGN CCCHHHHCCHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RMVEQYIRQALFMLEEGALPAQVDRAIETFGFAMGPFRMSDLAGNDIGWAIRKRRYVEQP HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHCCCCCHHHHHHHHHCCCCC DLHYSKIADRLCEQGRFGQKTGAGWYDYVPGERRAKPSKLVDEMIVAYSSERGLERREIG CCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHCC DDEIVERLVYSLVNEGAKILEEKIASKASDIDMVYLTGYGFPLWRGGPMLYADTVGLYNV CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCEEEECCCCHHHH ERAMRGYAQRANGDAWQIAPSIVELAKSGRGFNA HHHHHHHHHHCCCCCEEHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA