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The map label for this gene is pecT [H]

Identifier: 83721499

GI number: 83721499

Start: 914382

End: 915278

Strand: Reverse

Name: pecT [H]

Synonym: BTH_I0800

Alternate gene names: 83721499

Gene position: 915278-914382 (Counterclockwise)

Preceding gene: 83720384

Following gene: 83719310

Centisome position: 24.03

GC content: 71.57

Gene sequence:

>897_bases
ATGAATGCGCCGTCGGACTCGGCAGCAATGTCGCTCGACATCGTGCTGCTGCGCACTTTTCTCGAAGTCGCCGACAGCCG
CGGCTTCGCGCCTGCCGCCGAGCGGCTCGCGCTCACGCCGTCGGCGGTCAGCGGGCACATCAAGCGGCTCGAGCAGGCAA
CGGGCGCCGTGCTGCTCGCCCGCACGACGCGGCGCGTCGAGCTCACGCACGCGGGCGAGACCCTTTATGCATACGCGCGC
AACATCGTCGAGCTGGAACGCGAGGCGCGTGCGCGGCTGCGCGGCTCGCCGCTGCTCGGCCGGCTGCGCGTCGGCGCGTC
GGAGGATTTCGCCGGCGCGTGGCTGCCGCAGGTGCTGCATGCGTTCGGCCGCCTGCATCCGCGCGCGACGATCGAGCTGA
AGGTCGGCGTCACCGCGGATCTGCTGCGACAGCAAGCGTCGGGCCGCCTCGACGTCGTGTTCGGCAAGCACTGCAGCCGC
ATCGACGACAAAGCCGGCGAGCTGCTATGGGAAGAACCGCTCGTGTGGGCATTCGCGTCCGACGCCGCGCTCGACGCGAA
CGACGCGTTGCCGCTCGCGCTCTTTCCCGAGCCCTGCGTGTACCGCGAGGCGGCGCTCGCCGCGCTGAGCGACGCGTTGC
GGCCATTTCGAATCGCATTCGAGAGCGGCAGCATGGCGGGCTGCGTATCGGCCGCGCTCGCGGGATTCGCCGTCACTGTC
GTCGCGCGCAGCCAGTTGCGCGACGGCCTGCGCGAATGCGGGCCAAACGACGCGCTGCCCGCGCTGCCCGCCGCGCGCTT
CCATGCGTTCGCGCATCGGCCGACGCCCGCCGGCGCCGCGCTGATCGAGGCGGTGCGCGAAACCGGACGCCGCCGCCGCT
TCATGTCGACGCATTGA

Upstream 100 bases:

>100_bases
AGCGTCAGGTCGGTGATGTCGATCGTAGCCCGAGCTCTCGTCACGATTCTCAAGGAATCGTCATCTATTATTCGACTATC
TCGTTGAATGAGTGATCCAT

Downstream 100 bases:

>100_bases
CGCGCGGGCGCGAGCGAATGCGCAATCGATCGAGACGTCCGTCTCGCCATGAATCGCCAATACGCGGCGGCTGAAGCGGG
ATGAACGGTCGGCAACGAAG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: Pectinase gene transcriptional regulator [H]

Number of amino acids: Translated: 298; Mature: 298

Protein sequence:

>298_residues
MNAPSDSAAMSLDIVLLRTFLEVADSRGFAPAAERLALTPSAVSGHIKRLEQATGAVLLARTTRRVELTHAGETLYAYAR
NIVELEREARARLRGSPLLGRLRVGASEDFAGAWLPQVLHAFGRLHPRATIELKVGVTADLLRQQASGRLDVVFGKHCSR
IDDKAGELLWEEPLVWAFASDAALDANDALPLALFPEPCVYREAALAALSDALRPFRIAFESGSMAGCVSAALAGFAVTV
VARSQLRDGLRECGPNDALPALPAARFHAFAHRPTPAGAALIEAVRETGRRRRFMSTH

Sequences:

>Translated_298_residues
MNAPSDSAAMSLDIVLLRTFLEVADSRGFAPAAERLALTPSAVSGHIKRLEQATGAVLLARTTRRVELTHAGETLYAYAR
NIVELEREARARLRGSPLLGRLRVGASEDFAGAWLPQVLHAFGRLHPRATIELKVGVTADLLRQQASGRLDVVFGKHCSR
IDDKAGELLWEEPLVWAFASDAALDANDALPLALFPEPCVYREAALAALSDALRPFRIAFESGSMAGCVSAALAGFAVTV
VARSQLRDGLRECGPNDALPALPAARFHAFAHRPTPAGAALIEAVRETGRRRRFMSTH
>Mature_298_residues
MNAPSDSAAMSLDIVLLRTFLEVADSRGFAPAAERLALTPSAVSGHIKRLEQATGAVLLARTTRRVELTHAGETLYAYAR
NIVELEREARARLRGSPLLGRLRVGASEDFAGAWLPQVLHAFGRLHPRATIELKVGVTADLLRQQASGRLDVVFGKHCSR
IDDKAGELLWEEPLVWAFASDAALDANDALPLALFPEPCVYREAALAALSDALRPFRIAFESGSMAGCVSAALAGFAVTV
VARSQLRDGLRECGPNDALPALPAARFHAFAHRPTPAGAALIEAVRETGRRRRFMSTH

Specific function: Regulates pectinase gene expression [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788626, Length=258, Percent_Identity=33.3333333333333, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI48994962, Length=164, Percent_Identity=32.3170731707317, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1790208, Length=143, Percent_Identity=34.2657342657343, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1788748, Length=187, Percent_Identity=31.5508021390374, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI1787601, Length=306, Percent_Identity=25.1633986928105, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1790399, Length=187, Percent_Identity=27.807486631016, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1788706, Length=132, Percent_Identity=34.0909090909091, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1787879, Length=260, Percent_Identity=29.2307692307692, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1788887, Length=171, Percent_Identity=32.7485380116959, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1787806, Length=143, Percent_Identity=27.972027972028, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1788481, Length=249, Percent_Identity=26.5060240963855, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI87081978, Length=68, Percent_Identity=48.5294117647059, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1786713, Length=65, Percent_Identity=52.3076923076923, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32103; Mature: 32103

Theoretical pI: Translated: 8.67; Mature: 8.67

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNAPSDSAAMSLDIVLLRTFLEVADSRGFAPAAERLALTPSAVSGHIKRLEQATGAVLLA
CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCHHHHHHHHHHHHHHHCEEEEE
RTTRRVELTHAGETLYAYARNIVELEREARARLRGSPLLGRLRVGASEDFAGAWLPQVLH
ECCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHH
AFGRLHPRATIELKVGVTADLLRQQASGRLDVVFGKHCSRIDDKAGELLWEEPLVWAFAS
HHHCCCCCEEEEEEECCHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHCCCEEEEEEC
DAALDANDALPLALFPEPCVYREAALAALSDALRPFRIAFESGSMAGCVSAALAGFAVTV
CCCCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHH
VARSQLRDGLRECGPNDALPALPAARFHAFAHRPTPAGAALIEAVRETGRRRRFMSTH
HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MNAPSDSAAMSLDIVLLRTFLEVADSRGFAPAAERLALTPSAVSGHIKRLEQATGAVLLA
CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCHHHHHHHHHHHHHHHCEEEEE
RTTRRVELTHAGETLYAYARNIVELEREARARLRGSPLLGRLRVGASEDFAGAWLPQVLH
ECCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHH
AFGRLHPRATIELKVGVTADLLRQQASGRLDVVFGKHCSRIDDKAGELLWEEPLVWAFAS
HHHCCCCCEEEEEEECCHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHCCCEEEEEEC
DAALDANDALPLALFPEPCVYREAALAALSDALRPFRIAFESGSMAGCVSAALAGFAVTV
CCCCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHH
VARSQLRDGLRECGPNDALPALPAARFHAFAHRPTPAGAALIEAVRETGRRRRFMSTH
HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8626286 [H]