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The map label for this gene is rbsC [H]

Identifier: 83721448

GI number: 83721448

Start: 2830298

End: 2831311

Strand: Reverse

Name: rbsC [H]

Synonym: BTH_I2473

Alternate gene names: 83721448

Gene position: 2831311-2830298 (Counterclockwise)

Preceding gene: 83719061

Following gene: 83720525

Centisome position: 74.33

GC content: 69.33

Gene sequence:

>1014_bases
ATGAACGACCGATCCATCGACCGAAACGCCGATGCCCCGTCCGGGCAGCCGGGGGCCGTCGCGGCGAAGCCGGCTGGCGT
GCGGCTCGGCCTGTCGAACTACGTCGGGCTCGCGCTCGCGCTGATCGCGCTGATCGCGCTTTTCTCGACGCTCAGCTCGC
ATTTCCTCACGTACGACACGTTCAGCACGATCGCGAACCAGATTCCGGACCTCGTGGTGCTGTCGGTCGGCATGACCTTC
GTGCTCATCATCGCGGGGATCGACCTGTCGGTCGGCTCGGTGCTCGCGCTCGCGGCGTCGGTCGTGAGCGTCGCCGCGCT
GCGCTGGCAGTGGCCGCCGCTCGCCGCCGCGCTCATCGGCGTCGCGGCCGCCGCCGCGACGGGCACGCTCACGGGCGCGG
TGACGGTCGGCTGGCGGATTCCGTCGTTCATCGTGTCGCTCGGCGTGCTCGAGGCGGCGCGCGGCGTCGCGTATCAATTG
ACGAATTCGCGCACCGCCTACATCGGCGATGCGTTCGACTTCCTGTCGAACCCGATCGCGCTCGGCATCTCGCCCGCGTT
CCTGATCGCGGTGGCGGTGATGATCGTCGCGCAGTTCGTGCTCGCGCGCACCGTGTTCGGCCGCTACCTCGTCGGCATCG
GCACGAACGAGGAAGCGGTGCGACTGGCCGGGGTTAACCCGCGGCCGTATAAAATCATCGTTTTCGCGCTGATGGGCGCG
CTCGGCGGGCTCGCCGCGCTGTTCCAGATCTCCCGGCTCGAAGCCGCCGATCCGAACGCGGGCGCGGGCCTCGAGCTGCA
GGTGATCGCGGCCGTCGTGATCGGCGGCACGAGCTTGATGGGCGGTCGCGGCTCGGTCGTCAGCACGTTCTTCGGCGTGT
TGATCATCTCGGTGCTCGCGGCGGGGCTCGCGCAGATCGGCGCGAACGAACCGACCAAGCGCATCATCACCGGCGCCGTG
ATCGTCGTGGCCGTCGTGCTCGACACGTATCGCAGCCGGCGCGCGCGGGGATAG

Upstream 100 bases:

>100_bases
GGCGCGCGAACCGCCGCGTAGCGGGCCGCGCTCGACGCGGCTCGGAAGCCGGCGCACGGGCTCACTCCATATCGACGCAG
CAACACACAGGATTTTCACG

Downstream 100 bases:

>100_bases
CAAAGAACAACGAACCAGAGAGAAACGGAATGGCGACGATCAAGGATGTGGCGGCCATCGCCGGCGTATCGTTCACGACG
GTATCGCACGTGGTCAACAA

Product: ribose ABC transporter permease

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 337; Mature: 337

Protein sequence:

>337_residues
MNDRSIDRNADAPSGQPGAVAAKPAGVRLGLSNYVGLALALIALIALFSTLSSHFLTYDTFSTIANQIPDLVVLSVGMTF
VLIIAGIDLSVGSVLALAASVVSVAALRWQWPPLAAALIGVAAAAATGTLTGAVTVGWRIPSFIVSLGVLEAARGVAYQL
TNSRTAYIGDAFDFLSNPIALGISPAFLIAVAVMIVAQFVLARTVFGRYLVGIGTNEEAVRLAGVNPRPYKIIVFALMGA
LGGLAALFQISRLEAADPNAGAGLELQVIAAVVIGGTSLMGGRGSVVSTFFGVLIISVLAAGLAQIGANEPTKRIITGAV
IVVAVVLDTYRSRRARG

Sequences:

>Translated_337_residues
MNDRSIDRNADAPSGQPGAVAAKPAGVRLGLSNYVGLALALIALIALFSTLSSHFLTYDTFSTIANQIPDLVVLSVGMTF
VLIIAGIDLSVGSVLALAASVVSVAALRWQWPPLAAALIGVAAAAATGTLTGAVTVGWRIPSFIVSLGVLEAARGVAYQL
TNSRTAYIGDAFDFLSNPIALGISPAFLIAVAVMIVAQFVLARTVFGRYLVGIGTNEEAVRLAGVNPRPYKIIVFALMGA
LGGLAALFQISRLEAADPNAGAGLELQVIAAVVIGGTSLMGGRGSVVSTFFGVLIISVLAAGLAQIGANEPTKRIITGAV
IVVAVVLDTYRSRRARG
>Mature_337_residues
MNDRSIDRNADAPSGQPGAVAAKPAGVRLGLSNYVGLALALIALIALFSTLSSHFLTYDTFSTIANQIPDLVVLSVGMTF
VLIIAGIDLSVGSVLALAASVVSVAALRWQWPPLAAALIGVAAAAATGTLTGAVTVGWRIPSFIVSLGVLEAARGVAYQL
TNSRTAYIGDAFDFLSNPIALGISPAFLIAVAVMIVAQFVLARTVFGRYLVGIGTNEEAVRLAGVNPRPYKIIVFALMGA
LGGLAALFQISRLEAADPNAGAGLELQVIAAVVIGGTSLMGGRGSVVSTFFGVLIISVLAAGLAQIGANEPTKRIITGAV
IVVAVVLDTYRSRRARG

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=304, Percent_Identity=38.4868421052632, Blast_Score=164, Evalue=6e-42,
Organism=Escherichia coli, GI1788896, Length=309, Percent_Identity=33.0097087378641, Blast_Score=140, Evalue=1e-34,
Organism=Escherichia coli, GI1790524, Length=322, Percent_Identity=32.2981366459627, Blast_Score=131, Evalue=7e-32,
Organism=Escherichia coli, GI145693152, Length=273, Percent_Identity=32.2344322344322, Blast_Score=113, Evalue=2e-26,
Organism=Escherichia coli, GI87082395, Length=251, Percent_Identity=33.4661354581673, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI1789992, Length=137, Percent_Identity=42.3357664233577, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI145693214, Length=253, Percent_Identity=32.0158102766798, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1787793, Length=225, Percent_Identity=27.5555555555556, Blast_Score=78, Evalue=1e-15,
Organism=Escherichia coli, GI1788471, Length=320, Percent_Identity=29.375, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1787794, Length=313, Percent_Identity=24.6006389776358, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 34484; Mature: 34484

Theoretical pI: Translated: 10.09; Mature: 10.09

Prosite motif: PS00307 LECTIN_LEGUME_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDRSIDRNADAPSGQPGAVAAKPAGVRLGLSNYVGLALALIALIALFSTLSSHFLTYDT
CCCCCCCCCCCCCCCCCCCEEECCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FSTIANQIPDLVVLSVGMTFVLIIAGIDLSVGSVLALAASVVSVAALRWQWPPLAAALIG
HHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
VAAAAATGTLTGAVTVGWRIPSFIVSLGVLEAARGVAYQLTNSRTAYIGDAFDFLSNPIA
HHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHCCCEEEECCCCEEEECHHHHHHCCCCE
LGISPAFLIAVAVMIVAQFVLARTVFGRYLVGIGTNEEAVRLAGVNPRPYKIIVFALMGA
ECCCHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCEEEECCCCCCHHHHHHHHHHH
LGGLAALFQISRLEAADPNAGAGLELQVIAAVVIGGTSLMGGRGSVVSTFFGVLIISVLA
HHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH
AGLAQIGANEPTKRIITGAVIVVAVVLDTYRSRRARG
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MNDRSIDRNADAPSGQPGAVAAKPAGVRLGLSNYVGLALALIALIALFSTLSSHFLTYDT
CCCCCCCCCCCCCCCCCCCEEECCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FSTIANQIPDLVVLSVGMTFVLIIAGIDLSVGSVLALAASVVSVAALRWQWPPLAAALIG
HHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
VAAAAATGTLTGAVTVGWRIPSFIVSLGVLEAARGVAYQLTNSRTAYIGDAFDFLSNPIA
HHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHCCCEEEECCCCEEEECHHHHHHCCCCE
LGISPAFLIAVAVMIVAQFVLARTVFGRYLVGIGTNEEAVRLAGVNPRPYKIIVFALMGA
ECCCHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCEEEECCCCCCHHHHHHHHHHH
LGGLAALFQISRLEAADPNAGAGLELQVIAAVVIGGTSLMGGRGSVVSTFFGVLIISVLA
HHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH
AGLAQIGANEPTKRIITGAVIVVAVVLDTYRSRRARG
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]