Click here to switch to the map view.

The map label for this gene is glcD [H]

Identifier: 83721385

GI number: 83721385

Start: 2983796

End: 2985217

Strand: Direct

Name: glcD [H]

Synonym: BTH_I2621

Alternate gene names: 83721385

Gene position: 2983796-2985217 (Clockwise)

Preceding gene: 83718698

Following gene: 83718836

Centisome position: 78.33

GC content: 69.48

Gene sequence:

>1422_bases
ATGACCTCCTCCTCCGCTTTCGTCGACGCCTGCCGCCGGGCAATCGGCGCCGATCACGTGCTGACCGATCCGCACGACAC
CGCCCCGTTCCTGACCGACTGGCGCCGCCGCTACCAGGGCGCCGCGTGCGCGGTGCTCAGGCCCGCGAACACCGAAGAGG
TCGCGGCGCTCGTGAAGCTCGCGCTCGCGCATCGCGTCGCGCTCGTGCCGCAAGGCGGCAACACGGGCCTCGCGGGCGGC
GCGACGCCCGACGCGAGCGGCGCGCAGGCCGTGCTGAGCCTCGCGCGCCTGAACCGCGTGCGCGCGCTCGATCCGCACAA
CAACACGATCACCGTCGAGGCGGGCGTGATTCTCGCCGACGTGCAGGCGCGCGCGCAGGAAGCCGACCGGCTCTTCGCGC
TCAGCCTCGCCGCCGAAGGCAGTTGCACGATCGGCGGCAATCTCGCGACGAACGCGGGCGGCACCGCCGTGCTGCGCTAC
GGCAATGCGCGCGAGCTGTGCCTCGGGCTCGAGGTCGTCACGCCGCAAGGCGAGATCTGGGATGGCCTACGCGGGCTGCG
CAAGGACAACACCGGCTACGACCTGCGCGATCTCTTCATCGGCGCCGAGGGCACGCTCGGCATCATCACGGCCGCGGTCA
TGAAGCTGCATCCGCGTCCCGCCGCGAAGGTCACGGCGCTCGCCGCGCTCGAATCGCCGCACGCGGCGCTCGATTTCCTG
TCGCTCGCGCAGCGCGCGGCCGGCCCGCTGCTGACCGGCTTCGAGCTGATGTCGGACTTCTGCATGAAGCTCGTCGGCAA
GCACTACCCGCAACTGCGCTACCCGTTCGACGCCGCGCATCCGCAGACGGTGCTGCTCGAATTGTCGGACAACGAAAGCG
AGGCGCACGCGCGCGCGCTCTTCGAAAAGATGATGGAGGAAGCGTTCGAGGCGGGGCTCGTCGTCGATGCGGTCGTCGCC
GAGAACCTCGCGCAGTCGCGCGCGTTCTGGGATTTGCGCGAGCATATCCCGCTCGCGCAGGCAGACGAAGGGCTCAACAT
CAAGCACGACATCGCGGTGCCGATCTCGTCGATCGCGCGCTTCATCGACGAGACCGACGCGGCGATCCAGGCGGCCGCCC
CCGGCGCGCGGATGGTGACGTTCGGGCACCTCGGCGACGGCAACCTGCACTACAACGTGCAGATGCCCGAAGGCGGCGAT
CCGAAAGCGTTCCTCGCCGCGCACCAGGCGCCCATCAACCGGATCGTCTACGACAACGTCCACCGGCATCGCGGCACGAT
CAGCGCCGAGCACGGCATCGGCCAGTTGAAGATCGACGACGCGCAGCGCTACAAGGCCGCCGTCGAGATCGGGCTGATGC
GCGCACTGAAAACGGCGCTCGATCCGCTCAACCTGATGAACCCCGGCAAGGTGCTGCGCTGA

Upstream 100 bases:

>100_bases
GGCGCCGGGGCAGACGGCCACGCGCTCGCAAGACCGTCCGCGCGCGTCCGATCGCACCCGCCCCTGATTTTCTCGATTGC
CGGACCTCCGAACCAACGCC

Downstream 100 bases:

>100_bases
CGCCGCCGATTGCGACATGAAGGAGCCACCCGTGAAAGTTCGCGTGCTGTCCGACCTGCATCTCGAATGCAACGAGCCCG
ACGCGATCCCGCACGCGCAT

Product: FAD-binding oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 473; Mature: 472

Protein sequence:

>473_residues
MTSSSAFVDACRRAIGADHVLTDPHDTAPFLTDWRRRYQGAACAVLRPANTEEVAALVKLALAHRVALVPQGGNTGLAGG
ATPDASGAQAVLSLARLNRVRALDPHNNTITVEAGVILADVQARAQEADRLFALSLAAEGSCTIGGNLATNAGGTAVLRY
GNARELCLGLEVVTPQGEIWDGLRGLRKDNTGYDLRDLFIGAEGTLGIITAAVMKLHPRPAAKVTALAALESPHAALDFL
SLAQRAAGPLLTGFELMSDFCMKLVGKHYPQLRYPFDAAHPQTVLLELSDNESEAHARALFEKMMEEAFEAGLVVDAVVA
ENLAQSRAFWDLREHIPLAQADEGLNIKHDIAVPISSIARFIDETDAAIQAAAPGARMVTFGHLGDGNLHYNVQMPEGGD
PKAFLAAHQAPINRIVYDNVHRHRGTISAEHGIGQLKIDDAQRYKAAVEIGLMRALKTALDPLNLMNPGKVLR

Sequences:

>Translated_473_residues
MTSSSAFVDACRRAIGADHVLTDPHDTAPFLTDWRRRYQGAACAVLRPANTEEVAALVKLALAHRVALVPQGGNTGLAGG
ATPDASGAQAVLSLARLNRVRALDPHNNTITVEAGVILADVQARAQEADRLFALSLAAEGSCTIGGNLATNAGGTAVLRY
GNARELCLGLEVVTPQGEIWDGLRGLRKDNTGYDLRDLFIGAEGTLGIITAAVMKLHPRPAAKVTALAALESPHAALDFL
SLAQRAAGPLLTGFELMSDFCMKLVGKHYPQLRYPFDAAHPQTVLLELSDNESEAHARALFEKMMEEAFEAGLVVDAVVA
ENLAQSRAFWDLREHIPLAQADEGLNIKHDIAVPISSIARFIDETDAAIQAAAPGARMVTFGHLGDGNLHYNVQMPEGGD
PKAFLAAHQAPINRIVYDNVHRHRGTISAEHGIGQLKIDDAQRYKAAVEIGLMRALKTALDPLNLMNPGKVLR
>Mature_472_residues
TSSSAFVDACRRAIGADHVLTDPHDTAPFLTDWRRRYQGAACAVLRPANTEEVAALVKLALAHRVALVPQGGNTGLAGGA
TPDASGAQAVLSLARLNRVRALDPHNNTITVEAGVILADVQARAQEADRLFALSLAAEGSCTIGGNLATNAGGTAVLRYG
NARELCLGLEVVTPQGEIWDGLRGLRKDNTGYDLRDLFIGAEGTLGIITAAVMKLHPRPAAKVTALAALESPHAALDFLS
LAQRAAGPLLTGFELMSDFCMKLVGKHYPQLRYPFDAAHPQTVLLELSDNESEAHARALFEKMMEEAFEAGLVVDAVVAE
NLAQSRAFWDLREHIPLAQADEGLNIKHDIAVPISSIARFIDETDAAIQAAAPGARMVTFGHLGDGNLHYNVQMPEGGDP
KAFLAAHQAPINRIVYDNVHRHRGTISAEHGIGQLKIDDAQRYKAAVEIGLMRALKTALDPLNLMNPGKVLR

Specific function: Unknown

COG id: COG0277

COG function: function code C; FAD/FMN-containing dehydrogenases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 FAD-binding PCMH-type domain [H]

Homologues:

Organism=Homo sapiens, GI119964728, Length=453, Percent_Identity=37.7483443708609, Blast_Score=280, Evalue=2e-75,
Organism=Homo sapiens, GI37595756, Length=480, Percent_Identity=31.25, Blast_Score=172, Evalue=8e-43,
Organism=Homo sapiens, GI37595754, Length=503, Percent_Identity=30.0198807157058, Blast_Score=164, Evalue=1e-40,
Organism=Homo sapiens, GI4501993, Length=178, Percent_Identity=32.0224719101124, Blast_Score=97, Evalue=3e-20,
Organism=Escherichia coli, GI1789351, Length=475, Percent_Identity=28, Blast_Score=145, Evalue=7e-36,
Organism=Escherichia coli, GI1787977, Length=505, Percent_Identity=24.3564356435644, Blast_Score=79, Evalue=6e-16,
Organism=Escherichia coli, GI48994907, Length=222, Percent_Identity=26.1261261261261, Blast_Score=71, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17534361, Length=469, Percent_Identity=33.4754797441365, Blast_Score=261, Evalue=7e-70,
Organism=Caenorhabditis elegans, GI71992373, Length=438, Percent_Identity=28.7671232876712, Blast_Score=139, Evalue=3e-33,
Organism=Caenorhabditis elegans, GI71992381, Length=441, Percent_Identity=27.891156462585, Blast_Score=127, Evalue=2e-29,
Organism=Caenorhabditis elegans, GI71992392, Length=340, Percent_Identity=30.2941176470588, Blast_Score=120, Evalue=2e-27,
Organism=Caenorhabditis elegans, GI17556096, Length=198, Percent_Identity=24.7474747474747, Blast_Score=83, Evalue=3e-16,
Organism=Saccharomyces cerevisiae, GI6320023, Length=458, Percent_Identity=35.1528384279476, Blast_Score=300, Evalue=2e-82,
Organism=Saccharomyces cerevisiae, GI6320764, Length=470, Percent_Identity=31.063829787234, Blast_Score=260, Evalue=3e-70,
Organism=Saccharomyces cerevisiae, GI6320027, Length=440, Percent_Identity=28.8636363636364, Blast_Score=149, Evalue=7e-37,
Organism=Drosophila melanogaster, GI18921117, Length=459, Percent_Identity=36.6013071895425, Blast_Score=276, Evalue=3e-74,
Organism=Drosophila melanogaster, GI24639277, Length=459, Percent_Identity=36.6013071895425, Blast_Score=276, Evalue=3e-74,
Organism=Drosophila melanogaster, GI24639275, Length=459, Percent_Identity=36.6013071895425, Blast_Score=276, Evalue=3e-74,
Organism=Drosophila melanogaster, GI24653753, Length=219, Percent_Identity=28.7671232876712, Blast_Score=94, Evalue=2e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016166
- InterPro:   IPR016167
- InterPro:   IPR016164
- InterPro:   IPR016168
- InterPro:   IPR004113
- InterPro:   IPR004490
- InterPro:   IPR006094
- InterPro:   IPR016171 [H]

Pfam domain/function: PF02913 FAD-oxidase_C; PF01565 FAD_binding_4 [H]

EC number: NA

Molecular weight: Translated: 50520; Mature: 50389

Theoretical pI: Translated: 6.37; Mature: 6.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSSSAFVDACRRAIGADHVLTDPHDTAPFLTDWRRRYQGAACAVLRPANTEEVAALVKL
CCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEECCCCHHHHHHHHHH
ALAHRVALVPQGGNTGLAGGATPDASGAQAVLSLARLNRVRALDPHNNTITVEAGVILAD
HHHHHEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHEEECCCCCEEEEECCEEEEH
VQARAQEADRLFALSLAAEGSCTIGGNLATNAGGTAVLRYGNARELCLGLEVVTPQGEIW
HHHHHHHHHHEEEEEEECCCCEEECCCEECCCCCEEEEEECCCCEEEEEEEEECCCCHHH
DGLRGLRKDNTGYDLRDLFIGAEGTLGIITAAVMKLHPRPAAKVTALAALESPHAALDFL
HHHHHHCCCCCCCCHHHEEECCCCCHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHH
SLAQRAAGPLLTGFELMSDFCMKLVGKHYPQLRYPFDAAHPQTVLLELSDNESEAHARAL
HHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHH
FEKMMEEAFEAGLVVDAVVAENLAQSRAFWDLREHIPLAQADEGLNIKHDIAVPISSIAR
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCHHHHHH
FIDETDAAIQAAAPGARMVTFGHLGDGNLHYNVQMPEGGDPKAFLAAHQAPINRIVYDNV
HHHHHHHHHHHCCCCCEEEEEEECCCCEEEEEEECCCCCCCHHHHHHHHCCHHHHHHHHH
HRHRGTISAEHGIGQLKIDDAQRYKAAVEIGLMRALKTALDPLNLMNPGKVLR
HHHCCCEECCCCCCEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure 
TSSSAFVDACRRAIGADHVLTDPHDTAPFLTDWRRRYQGAACAVLRPANTEEVAALVKL
CCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEECCCCHHHHHHHHHH
ALAHRVALVPQGGNTGLAGGATPDASGAQAVLSLARLNRVRALDPHNNTITVEAGVILAD
HHHHHEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHEEECCCCCEEEEECCEEEEH
VQARAQEADRLFALSLAAEGSCTIGGNLATNAGGTAVLRYGNARELCLGLEVVTPQGEIW
HHHHHHHHHHEEEEEEECCCCEEECCCEECCCCCEEEEEECCCCEEEEEEEEECCCCHHH
DGLRGLRKDNTGYDLRDLFIGAEGTLGIITAAVMKLHPRPAAKVTALAALESPHAALDFL
HHHHHHCCCCCCCCHHHEEECCCCCHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHH
SLAQRAAGPLLTGFELMSDFCMKLVGKHYPQLRYPFDAAHPQTVLLELSDNESEAHARAL
HHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHH
FEKMMEEAFEAGLVVDAVVAENLAQSRAFWDLREHIPLAQADEGLNIKHDIAVPISSIAR
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCHHHHHH
FIDETDAAIQAAAPGARMVTFGHLGDGNLHYNVQMPEGGDPKAFLAAHQAPINRIVYDNV
HHHHHHHHHHHCCCCCEEEEEEECCCCEEEEEEECCCCCCCHHHHHHHHCCHHHHHHHHH
HRHRGTISAEHGIGQLKIDDAQRYKAAVEIGLMRALKTALDPLNLMNPGKVLR
HHHCCCEECCCCCCEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]