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The map label for this gene is degU [H]

Identifier: 83721051

GI number: 83721051

Start: 1234715

End: 1235554

Strand: Reverse

Name: degU [H]

Synonym: BTH_I1094

Alternate gene names: 83721051

Gene position: 1235554-1234715 (Counterclockwise)

Preceding gene: 83719508

Following gene: 83718690

Centisome position: 32.44

GC content: 65.36

Gene sequence:

>840_bases
ATGAGGTTTCTGGTGCTCAATTCGGACGCAGAGCGTCGCGACGGCTTGAAAACCCTGCTGCGTCAAATCGACCGACATGC
CGGCTACAACGACGCCAAGGACTGGCGGCAGGCGCAACGGCTCATCAAGCAGCAAGGCTTCGACTTGATCGCGGTCGACT
GGCAGGACATCAAGCGGCTCGGCGATCTGCACGCGCTTTGCCAGGCTTGCGCGCCCACGCCCGTCGCGGCGCTCACCGAC
GACGCGTCGCCCGAACACGCACAGGCGCTCTTCAATGCCGGCGTACTCGGCGTCATTCCGCGTTCCACGCGCCCGCACCT
CATCGTTCGCGCGCTCGAAATGGTGCTGCTAGGCGGACACTACGTGCCGCCGAGCGCCCTGAACCTCACCGAGCCGATTG
CGCGCGCGAGGGACGGCCGTGTCGACGCGATCGTCAGCCAGTTGCCGCGCAGGAAGCGCTCGCCTTGCAGCCTGCTGTCG
CCGCGACAAGCCCAAATCATGCGCTTCGTTCACATGGGCAGCACCAACAAGATGATCGCGCGCACGCTCGGCATCAGCGA
AGGCACGGTCAAGATTCATCTGGCCAGCATCTTCCAACAGTTAGGTGCGACAAATCGCGCCGCCGCGGTCGCGATTTACA
ACGGCTGGCTCCCGCCGCATCTCGAAGTGCTGCTATCCGCACGCGAGACTTCGCCGAAACCCGTACACGGCGCGGCCGGC
CCCGTGCCGCTGCGCCCCGCGAATTCGCGGCATCCGTACCCGCTCGCCGCCGAAAACGAATCGTCTGCCCAGCCGCTCGT
CGCGGCAGAACCGGACGCGCCGTTCAAAGCGAACGAATAG

Upstream 100 bases:

>100_bases
TATGCCTTTCAGCCAGGCCGACATTTTGTAACGCTTTTGTCATTATTGAGGAGATGGCACTCGTCGTTTTCTCGATCAAT
CGGATAAGCGGAGGCATAAC

Downstream 100 bases:

>100_bases
CCGGTAAAACCCGCGTAGAGGGTGAATCCATTCCCATCTTTTGTATTCAACGAGTAATATAAAAACATGGGTTTCCTCTA
CACGCCGCTTCCGTTCTGGG

Product: DNA-binding response regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 279; Mature: 279

Protein sequence:

>279_residues
MRFLVLNSDAERRDGLKTLLRQIDRHAGYNDAKDWRQAQRLIKQQGFDLIAVDWQDIKRLGDLHALCQACAPTPVAALTD
DASPEHAQALFNAGVLGVIPRSTRPHLIVRALEMVLLGGHYVPPSALNLTEPIARARDGRVDAIVSQLPRRKRSPCSLLS
PRQAQIMRFVHMGSTNKMIARTLGISEGTVKIHLASIFQQLGATNRAAAVAIYNGWLPPHLEVLLSARETSPKPVHGAAG
PVPLRPANSRHPYPLAAENESSAQPLVAAEPDAPFKANE

Sequences:

>Translated_279_residues
MRFLVLNSDAERRDGLKTLLRQIDRHAGYNDAKDWRQAQRLIKQQGFDLIAVDWQDIKRLGDLHALCQACAPTPVAALTD
DASPEHAQALFNAGVLGVIPRSTRPHLIVRALEMVLLGGHYVPPSALNLTEPIARARDGRVDAIVSQLPRRKRSPCSLLS
PRQAQIMRFVHMGSTNKMIARTLGISEGTVKIHLASIFQQLGATNRAAAVAIYNGWLPPHLEVLLSARETSPKPVHGAAG
PVPLRPANSRHPYPLAAENESSAQPLVAAEPDAPFKANE
>Mature_279_residues
MRFLVLNSDAERRDGLKTLLRQIDRHAGYNDAKDWRQAQRLIKQQGFDLIAVDWQDIKRLGDLHALCQACAPTPVAALTD
DASPEHAQALFNAGVLGVIPRSTRPHLIVRALEMVLLGGHYVPPSALNLTEPIARARDGRVDAIVSQLPRRKRSPCSLLS
PRQAQIMRFVHMGSTNKMIARTLGISEGTVKIHLASIFQQLGATNRAAAVAIYNGWLPPHLEVLLSARETSPKPVHGAAG
PVPLRPANSRHPYPLAAENESSAQPLVAAEPDAPFKANE

Specific function: Regulating factor for the production of extracellular proteases. The N-terminal region acts as an inhibitor, whereas the C-terminal region carries enhancing activity [H]

COG id: COG2197

COG function: function code TK; Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR016032
- InterPro:   IPR001789
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 30460; Mature: 30460

Theoretical pI: Translated: 10.19; Mature: 10.19

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRFLVLNSDAERRDGLKTLLRQIDRHAGYNDAKDWRQAQRLIKQQGFDLIAVDWQDIKRL
CEEEEECCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCEEEECHHHHHHH
GDLHALCQACAPTPVAALTDDASPEHAQALFNAGVLGVIPRSTRPHLIVRALEMVLLGGH
HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHHCCC
YVPPSALNLTEPIARARDGRVDAIVSQLPRRKRSPCSLLSPRQAQIMRFVHMGSTNKMIA
CCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCHHHH
RTLGISEGTVKIHLASIFQQLGATNRAAAVAIYNGWLPPHLEVLLSARETSPKPVHGAAG
HHHCCCCCEEEEHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCC
PVPLRPANSRHPYPLAAENESSAQPLVAAEPDAPFKANE
CCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCC
>Mature Secondary Structure
MRFLVLNSDAERRDGLKTLLRQIDRHAGYNDAKDWRQAQRLIKQQGFDLIAVDWQDIKRL
CEEEEECCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCEEEECHHHHHHH
GDLHALCQACAPTPVAALTDDASPEHAQALFNAGVLGVIPRSTRPHLIVRALEMVLLGGH
HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHHCCC
YVPPSALNLTEPIARARDGRVDAIVSQLPRRKRSPCSLLSPRQAQIMRFVHMGSTNKMIA
CCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCHHHH
RTLGISEGTVKIHLASIFQQLGATNRAAAVAIYNGWLPPHLEVLLSARETSPKPVHGAAG
HHHCCCCCEEEEHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCC
PVPLRPANSRHPYPLAAENESSAQPLVAAEPDAPFKANE
CCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7765823 [H]