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The map label for this gene is yecS [H]

Identifier: 83720853

GI number: 83720853

Start: 1747804

End: 1748463

Strand: Reverse

Name: yecS [H]

Synonym: BTH_I1548

Alternate gene names: 83720853

Gene position: 1748463-1747804 (Counterclockwise)

Preceding gene: 83718424

Following gene: 83721531

Centisome position: 45.9

GC content: 65.91

Gene sequence:

>660_bases
ATGCAAGCGTTCGATCTGGTCGTGCATACCCTCCCCATCCTCGCGAGAGGCGCGGTTCTCACGATGAAGTTCGCGGTCGC
GTCGATGGTGCTCGGATTGATCGTCGGCCTCGTCGTCGCGATCGTGCGAATCGGCAACAACCGGTTCCTTTCCGCGATCG
CGCAAGGCTACGTGAGCCTGATGCGCGGCACGCCGCTCCTCGTGCAAATGTTCGTCGTCTACTACGGGCTGCCCGACATC
GGCATCTCGCTCGACCCGACGTCGGCCGGCATCTTCACGCTGACGCTCAACGCAGGCGCGTACCTGTCCGAAAGCATGCG
CGGCGCGATCCTCGGAATCGGCCGCGGCCAGTGGGCCGCGTCGCACAGCCTCGGCCTCACGCACGCGCAGACGCTGCGCT
ACGTGATCTGCCCGCAGGCGCTGCGCCTCGCGGTGCCGAGCCTCGGCAACACGCTGATCAGCCTCATCAAGGACACGTCG
CTCGTGTCCGTCATCACCGTCACGGAACTGTTGCGCTCGACGCAGGAAGTGATCGCGTCGACGTTCCAGCCTCTGCCGCT
GTATCTCGCCGCCGCCGCGATCTACTGGGTGCTGAGCACGCTGCTCGCTCGGCTCCAGGGCCGCATCGAAACGCGCTGCG
CGCTGCCGTCGACACATTGA

Upstream 100 bases:

>100_bases
CCGAGCGCGCAATAAGCGGCTGGCCGCCCCGCCCGCGCCGCGCGCGCGTCGGCGCGCATGCCGCCGCCGGCGCGCGCGCC
AACGATCTGGAGACAAGTTC

Downstream 100 bases:

>100_bases
ACGCGCGCCGGAGCGCCGGTTCCGGCCGCGCCCGCCGCAATTCACGAAGCACCCCGACATGATCACGCTCGACAACGTAT
CGAAGTGGTACGGCCCGCAT

Product: His/Glu/Gln/Arg/opine ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 219; Mature: 219

Protein sequence:

>219_residues
MQAFDLVVHTLPILARGAVLTMKFAVASMVLGLIVGLVVAIVRIGNNRFLSAIAQGYVSLMRGTPLLVQMFVVYYGLPDI
GISLDPTSAGIFTLTLNAGAYLSESMRGAILGIGRGQWAASHSLGLTHAQTLRYVICPQALRLAVPSLGNTLISLIKDTS
LVSVITVTELLRSTQEVIASTFQPLPLYLAAAAIYWVLSTLLARLQGRIETRCALPSTH

Sequences:

>Translated_219_residues
MQAFDLVVHTLPILARGAVLTMKFAVASMVLGLIVGLVVAIVRIGNNRFLSAIAQGYVSLMRGTPLLVQMFVVYYGLPDI
GISLDPTSAGIFTLTLNAGAYLSESMRGAILGIGRGQWAASHSLGLTHAQTLRYVICPQALRLAVPSLGNTLISLIKDTS
LVSVITVTELLRSTQEVIASTFQPLPLYLAAAAIYWVLSTLLARLQGRIETRCALPSTH
>Mature_219_residues
MQAFDLVVHTLPILARGAVLTMKFAVASMVLGLIVGLVVAIVRIGNNRFLSAIAQGYVSLMRGTPLLVQMFVVYYGLPDI
GISLDPTSAGIFTLTLNAGAYLSESMRGAILGIGRGQWAASHSLGLTHAQTLRYVICPQALRLAVPSLGNTLISLIKDTS
LVSVITVTELLRSTQEVIASTFQPLPLYLAAAAIYWVLSTLLARLQGRIETRCALPSTH

Specific function: Probably part of the binding-protein-dependent transport system yecCS for an amino acid; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0765

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788226, Length=211, Percent_Identity=42.654028436019, Blast_Score=194, Evalue=5e-51,
Organism=Escherichia coli, GI1787030, Length=207, Percent_Identity=38.1642512077295, Blast_Score=144, Evalue=4e-36,
Organism=Escherichia coli, GI1788646, Length=200, Percent_Identity=34, Blast_Score=128, Evalue=4e-31,
Organism=Escherichia coli, GI1787087, Length=223, Percent_Identity=30.4932735426009, Blast_Score=106, Evalue=9e-25,
Organism=Escherichia coli, GI1788645, Length=206, Percent_Identity=30.5825242718447, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI1786873, Length=224, Percent_Identity=30.3571428571429, Blast_Score=101, Evalue=4e-23,
Organism=Escherichia coli, GI1787086, Length=212, Percent_Identity=31.1320754716981, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI87082239, Length=205, Percent_Identity=32.1951219512195, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1786874, Length=215, Percent_Identity=27.4418604651163, Blast_Score=89, Evalue=2e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 23404; Mature: 23404

Theoretical pI: Translated: 9.93; Mature: 9.93

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQAFDLVVHTLPILARGAVLTMKFAVASMVLGLIVGLVVAIVRIGNNRFLSAIAQGYVSL
CCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
MRGTPLLVQMFVVYYGLPDIGISLDPTSAGIFTLTLNAGAYLSESMRGAILGIGRGQWAA
HCCCHHHHHHHHHHHCCCCCCCEECCCCCCEEEEEECCCHHHHHHHCCCEEECCCCCCCC
SHSLGLTHAQTLRYVICPQALRLAVPSLGNTLISLIKDTSLVSVITVTELLRSTQEVIAS
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TFQPLPLYLAAAAIYWVLSTLLARLQGRIETRCALPSTH
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MQAFDLVVHTLPILARGAVLTMKFAVASMVLGLIVGLVVAIVRIGNNRFLSAIAQGYVSL
CCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
MRGTPLLVQMFVVYYGLPDIGISLDPTSAGIFTLTLNAGAYLSESMRGAILGIGRGQWAA
HCCCHHHHHHHHHHHCCCCCCCEECCCCCCEEEEEECCCHHHHHHHCCCEEECCCCCCCC
SHSLGLTHAQTLRYVICPQALRLAVPSLGNTLISLIKDTSLVSVITVTELLRSTQEVIAS
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TFQPLPLYLAAAAIYWVLSTLLARLQGRIETRCALPSTH
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]