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The map label for this gene is rhaR [C]

Identifier: 83720833

GI number: 83720833

Start: 64266

End: 65480

Strand: Reverse

Name: rhaR [C]

Synonym: BTH_I0059

Alternate gene names: 83720833

Gene position: 65480-64266 (Counterclockwise)

Preceding gene: 83718601

Following gene: 83718619

Centisome position: 1.72

GC content: 71.28

Gene sequence:

>1215_bases
ATGGCGTCTCCAGTGTGGGAATCGCGCGGCGCGCCGGCGTCGGCGCCGGCGGCAAGCTGTTTGCGGTATTTGAGCAAGTC
CGGGACAATCTGCGTTGATCCGAAACGCCATTTTCTTGATATGAAAAAACCGCCGCGCGGCGCCGGCCGGCCCGGGGTCG
CGATCCTTCTGCCGCCGCGCCTCTTGGGCGGCTACGTGTTCCTCACGCAGGAGATGCTGCTGCTCGCCGGCACGATGAAG
GCGCGCAGCCTCGACGTCGTGAACAGCCGGCTGTTCGACATCGCGATGCTGTCGCACGACGGCCGGCCGGTGCCGACCAT
CGGCGGCGTCGACGTGCCGGCGACGGCCGCGCTGCGCGACACGGACGCGCACGAAGTCGTGATCGTCCCCGCTCAGTTCA
TGCCGGACGAGCAGATCGGCGCGGTCGAGCGCGTGTTCATCGATTGGCTGAAGCGCCGCTATGCGGCGGGCGCGCTCGTC
GTCGGGCTCAACGCGGCGCCGCTGATCGCGAAGGCCGGCTTGCTCGACGGCCGCGGCGCGACCGGACTGCCGAGCGAGCG
CACGCTGTTCGCACGGCATTTCCCGGCGGTGCGCTATACGCCGTCGAAGCCGCTCGTCGTCGACGGGCGGCTCATCACGG
TGAGCGGCATCAATCCGGCCGTCGACGCATGCGCGTACGTGATCGACTACTGCTTCGGCGCGGGCGTGTCGCAGCGGCTG
CTGCGGGTCGCGCTCACGCAATCGCTGCCGTCGTACGAGCACATGGCCGTGTGGGCCGCGCAGTACAAGCGGCACGGCGA
TGCGCCGGTGCTCGCGGTGCAGGACGGCGTCGAGCGCGCGCTCGCGCACCCGCCGACACTCGCCGAGCTCGCCGCGCGCG
CGGCGATGAGCGAGCGCACGCTGTCGCGCCGCTTCGCGGCCGCGACCGGGCTCACGCTGCGGCGCTACGTCGCCGCGCTG
CGCGTCGAGCTCGCCGCGTTCCTGCTGCGCACGAGCCGGATGACGCTCGACCATATCGCCGACGAATGCGGCTTCGCGAG
CGCGAGCGCGCTGAGCCATGCGTTCCTCGCGGGGCAAGGATGCAGCCCGGTTCAGTATCGGAACCGGCATCGGCCCGACG
CGCGGCGCGATGCGGCGCAAAACGGCAGCGCGGGCGGCACGGCGGCGATTTCGGGAACGGGCGGGGCAAGCGCGGGCGAG
CAGGCCGGAAAGTGA

Upstream 100 bases:

>100_bases
CTCCCAGCGCTCGTGGTACGGCATCACCTCGGATTCGATGAAACGGCGGACGGACTCGCGGAACTGCTCGTGCTCTTCGG
CGAAGATGGTGCGGGGAATC

Downstream 100 bases:

>100_bases
TCGGGCGGCCCGCGGCGCCATAGACCGTCGGCGCGCCCGCCTTCGCCTGTCAGCCCCTCACCTTTCACGGCGGTCGCGGC
GCGCAAACCACGTCGCCGCG

Product: AraC family transcription regulator

Products: NA

Alternate protein names: Transcriptional Regulator; Transcriptional Regulator AraC Family; AraC-Family Transcriptional Regulator; AraC Family Transcription Regulator; Transcriptional Activator FtrA; AraC Family Regulatory Protein; ThiJ/PfpI Domain-Containing Protein; ADPA Family Transcriptional Regulator; Helix-Turn-Helix- Domain Containing Protein AraC Type; Transcriptional Regulator Arac Family; Transcriptional Regulator AraC Family Protein; AraC Family Regulatory Helix-Turn-Helix Protein; Transcriptional Regulatory Protein; AraC Family Transcriptional Regulatory Protein; HTH-Type Transcriptional Regulator GlxA; HTH-Type Transcriptional Regulator Glxa; Transcriptional Regulator AraC-Family Protein; Helix-Turn-Helix Domain-Containing Protein; Helix-Turn-Helix Domain-Containing Protein AraC Type; DJ-1/PfpI Family; ADPA-Family Transcriptional Regulator; DJ-1/PfpI Family Protein; Fis Family Transcriptional Regulator

Number of amino acids: Translated: 404; Mature: 403

Protein sequence:

>404_residues
MASPVWESRGAPASAPAASCLRYLSKSGTICVDPKRHFLDMKKPPRGAGRPGVAILLPPRLLGGYVFLTQEMLLLAGTMK
ARSLDVVNSRLFDIAMLSHDGRPVPTIGGVDVPATAALRDTDAHEVVIVPAQFMPDEQIGAVERVFIDWLKRRYAAGALV
VGLNAAPLIAKAGLLDGRGATGLPSERTLFARHFPAVRYTPSKPLVVDGRLITVSGINPAVDACAYVIDYCFGAGVSQRL
LRVALTQSLPSYEHMAVWAAQYKRHGDAPVLAVQDGVERALAHPPTLAELAARAAMSERTLSRRFAAATGLTLRRYVAAL
RVELAAFLLRTSRMTLDHIADECGFASASALSHAFLAGQGCSPVQYRNRHRPDARRDAAQNGSAGGTAAISGTGGASAGE
QAGK

Sequences:

>Translated_404_residues
MASPVWESRGAPASAPAASCLRYLSKSGTICVDPKRHFLDMKKPPRGAGRPGVAILLPPRLLGGYVFLTQEMLLLAGTMK
ARSLDVVNSRLFDIAMLSHDGRPVPTIGGVDVPATAALRDTDAHEVVIVPAQFMPDEQIGAVERVFIDWLKRRYAAGALV
VGLNAAPLIAKAGLLDGRGATGLPSERTLFARHFPAVRYTPSKPLVVDGRLITVSGINPAVDACAYVIDYCFGAGVSQRL
LRVALTQSLPSYEHMAVWAAQYKRHGDAPVLAVQDGVERALAHPPTLAELAARAAMSERTLSRRFAAATGLTLRRYVAAL
RVELAAFLLRTSRMTLDHIADECGFASASALSHAFLAGQGCSPVQYRNRHRPDARRDAAQNGSAGGTAAISGTGGASAGE
QAGK
>Mature_403_residues
ASPVWESRGAPASAPAASCLRYLSKSGTICVDPKRHFLDMKKPPRGAGRPGVAILLPPRLLGGYVFLTQEMLLLAGTMKA
RSLDVVNSRLFDIAMLSHDGRPVPTIGGVDVPATAALRDTDAHEVVIVPAQFMPDEQIGAVERVFIDWLKRRYAAGALVV
GLNAAPLIAKAGLLDGRGATGLPSERTLFARHFPAVRYTPSKPLVVDGRLITVSGINPAVDACAYVIDYCFGAGVSQRLL
RVALTQSLPSYEHMAVWAAQYKRHGDAPVLAVQDGVERALAHPPTLAELAARAAMSERTLSRRFAAATGLTLRRYVAALR
VELAAFLLRTSRMTLDHIADECGFASASALSHAFLAGQGCSPVQYRNRHRPDARRDAAQNGSAGGTAAISGTGGASAGEQ
AGK

Specific function: Activator Of The L-Rhamnose Operon. Rhar Putatively Autoregulates Its Synthesis. [C]

COG id: COG4977

COG function: function code K; Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 42789; Mature: 42658

Theoretical pI: Translated: 10.03; Mature: 10.03

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASPVWESRGAPASAPAASCLRYLSKSGTICVDPKRHFLDMKKPPRGAGRPGVAILLPPR
CCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEECCHHHHCCCCCCCCCCCCCCEEEEECHH
LLGGYVFLTQEMLLLAGTMKARSLDVVNSRLFDIAMLSHDGRPVPTIGGVDVPATAALRD
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCHHCCC
TDAHEVVIVPAQFMPDEQIGAVERVFIDWLKRRYAAGALVVGLNAAPLIAKAGLLDGRGA
CCCCEEEEECHHHCCCHHHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHCCCCCCCCC
TGLPSERTLFARHFPAVRYTPSKPLVVDGRLITVSGINPAVDACAYVIDYCFGAGVSQRL
CCCCCCCHHHHHHCCCEEECCCCCEEECCEEEEEECCCHHHHHHHHHHHHHHCCCHHHHH
LRVALTQSLPSYEHMAVWAAQYKRHGDAPVLAVQDGVERALAHPPTLAELAARAAMSERT
HHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHCCCCHHHHHHHHHHHHHHH
LSRRFAAATGLTLRRYVAALRVELAAFLLRTSRMTLDHIADECGFASASALSHAFLAGQG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCC
CSPVQYRNRHRPDARRDAAQNGSAGGTAAISGTGGASAGEQAGK
CCCHHHHHCCCCCHHHHHHCCCCCCCEEEEECCCCCCCCCCCCC
>Mature Secondary Structure 
ASPVWESRGAPASAPAASCLRYLSKSGTICVDPKRHFLDMKKPPRGAGRPGVAILLPPR
CCCCCCCCCCCCCCCHHHHHHHHHCCCCEEECCHHHHCCCCCCCCCCCCCCEEEEECHH
LLGGYVFLTQEMLLLAGTMKARSLDVVNSRLFDIAMLSHDGRPVPTIGGVDVPATAALRD
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCHHCCC
TDAHEVVIVPAQFMPDEQIGAVERVFIDWLKRRYAAGALVVGLNAAPLIAKAGLLDGRGA
CCCCEEEEECHHHCCCHHHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHCCCCCCCCC
TGLPSERTLFARHFPAVRYTPSKPLVVDGRLITVSGINPAVDACAYVIDYCFGAGVSQRL
CCCCCCCHHHHHHCCCEEECCCCCEEECCEEEEEECCCHHHHHHHHHHHHHHCCCHHHHH
LRVALTQSLPSYEHMAVWAAQYKRHGDAPVLAVQDGVERALAHPPTLAELAARAAMSERT
HHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHCCCCHHHHHHHHHHHHHHH
LSRRFAAATGLTLRRYVAALRVELAAFLLRTSRMTLDHIADECGFASASALSHAFLAGQG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCC
CSPVQYRNRHRPDARRDAAQNGSAGGTAAISGTGGASAGEQAGK
CCCHHHHHCCCCCHHHHHHCCCCCCCEEEEECCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA