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The map label for this gene is ybiR [H]

Identifier: 83720761

GI number: 83720761

Start: 3776877

End: 3778010

Strand: Reverse

Name: ybiR [H]

Synonym: BTH_I3316

Alternate gene names: 83720761

Gene position: 3778010-3776877 (Counterclockwise)

Preceding gene: 83721551

Following gene: 83721547

Centisome position: 99.18

GC content: 66.49

Gene sequence:

>1134_bases
GTGTCGAATTCGGTTGTCGGTCGCGCGACTGCGCGGATCATTGCGTTCGTCCGGCATGAGCCGGTTCTCTCGATTCTCGT
CGCGGCGCTGATTGCGCTGCAGCTCGTTCGTCCGCAATCGGCGGGCGCGCTCGTGCGGCTCGTCGACTGGCAGACCGTCG
CGACGCTCGCCGGCCTGCTGATGCTGACGAAGGCGCTCGAGCTGTCGGGCTTCCTGATGTGGCTCGCGCACCGGATAGTC
CATCGCGTGCGGTCCGAGCGTGCGCTTGCCGCGCTGCTCGTCGTGTTCGCCGCGTCGTTGTCCGTGTGGCTCACGAACGA
CGTGGCGCTCTTCGTCGTGATTCCGCTCGTGCTGTCGCTGCGCGAGCTGACGCCGTTGCCGTTCAAGCGCCTCGTGATCT
ACATCGCACTCGCCGTGAACGCGGGCGCGATCGCAACTCCGCTCGGCAATCCGCAAAATCTGTTTCTGTGGCAGTTGAGC
GGCATCTCATTCGGCCGCTTCGTGATCGCGCTCGGGCCGCTCGCACTCGTGCTGATGGCGCTGCTGCTCGCGATGACCGC
GATTGCGTTCGACGGCCGTCCGCTCGATTTGTCGAAGGACCACGCCGAGCGGCCGGTCGATCGCGCGCACGCGTTCGCGA
CGGTCGCGATGTTCGCGGGCTTCGTGCTGCTCGCGGACGCGCATCATGCGCTGGCCGGCGTGCTCGCGGTCGCGGCGATC
TTTCTGATCGTGCGGCGCGACGCGGTGCTGAAGATCGACTGGCTCCTGCTGCTGATCTTCGTGCTGATGTTCATCGTGCT
GCGCAGCGCGGCATTGCTGCCGGCTGTCCACCGGACGATCGCCGACATCGGTCTCGATACGCCGCTGCGCGCATATGCGG
CGGGTGCGCTGTTGTCGCAGGCGATCAGCAACGTGCCGGCCGCGATTCTGCTGTCGGAGTTCACGCGCGACTGGCGCGCG
CTCGCGTTCGGCGTGAGCGTCGGCGGGTTCGGCATCGCGATCGGCTCGCTCGCCAACCTGATTGCGATCCGGCTGTCCCG
GACGCGAGGGATGTGGTTGCCGTTCCATCTCGTGAGCATTCCGTTCGGCATCGCGAGCGCCGTGCTCGGCGCGTTGCTGC
TGCATTATTTTTGA

Upstream 100 bases:

>100_bases
TCGCCGCGGGCGGGGCCAGTTGACGATCGATTTCGGCGACCTCGACGCGCTCGAAGGCATCCTCGCGCGACTGCGCGGCA
ATGTCGCCGCGTAACGCAAC

Downstream 100 bases:

>100_bases
GCAGCGGCGCGCACCGGAACGGGGCAGGACAAGAGGCGTTTCACGCGGTTCGATTGATCGAAAATACATACCTTACAACT
GTCATCGAGCGCTAAAAATT

Product: transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 377; Mature: 376

Protein sequence:

>377_residues
MSNSVVGRATARIIAFVRHEPVLSILVAALIALQLVRPQSAGALVRLVDWQTVATLAGLLMLTKALELSGFLMWLAHRIV
HRVRSERALAALLVVFAASLSVWLTNDVALFVVIPLVLSLRELTPLPFKRLVIYIALAVNAGAIATPLGNPQNLFLWQLS
GISFGRFVIALGPLALVLMALLLAMTAIAFDGRPLDLSKDHAERPVDRAHAFATVAMFAGFVLLADAHHALAGVLAVAAI
FLIVRRDAVLKIDWLLLLIFVLMFIVLRSAALLPAVHRTIADIGLDTPLRAYAAGALLSQAISNVPAAILLSEFTRDWRA
LAFGVSVGGFGIAIGSLANLIAIRLSRTRGMWLPFHLVSIPFGIASAVLGALLLHYF

Sequences:

>Translated_377_residues
MSNSVVGRATARIIAFVRHEPVLSILVAALIALQLVRPQSAGALVRLVDWQTVATLAGLLMLTKALELSGFLMWLAHRIV
HRVRSERALAALLVVFAASLSVWLTNDVALFVVIPLVLSLRELTPLPFKRLVIYIALAVNAGAIATPLGNPQNLFLWQLS
GISFGRFVIALGPLALVLMALLLAMTAIAFDGRPLDLSKDHAERPVDRAHAFATVAMFAGFVLLADAHHALAGVLAVAAI
FLIVRRDAVLKIDWLLLLIFVLMFIVLRSAALLPAVHRTIADIGLDTPLRAYAAGALLSQAISNVPAAILLSEFTRDWRA
LAFGVSVGGFGIAIGSLANLIAIRLSRTRGMWLPFHLVSIPFGIASAVLGALLLHYF
>Mature_376_residues
SNSVVGRATARIIAFVRHEPVLSILVAALIALQLVRPQSAGALVRLVDWQTVATLAGLLMLTKALELSGFLMWLAHRIVH
RVRSERALAALLVVFAASLSVWLTNDVALFVVIPLVLSLRELTPLPFKRLVIYIALAVNAGAIATPLGNPQNLFLWQLSG
ISFGRFVIALGPLALVLMALLLAMTAIAFDGRPLDLSKDHAERPVDRAHAFATVAMFAGFVLLADAHHALAGVLAVAAIF
LIVRRDAVLKIDWLLLLIFVLMFIVLRSAALLPAVHRTIADIGLDTPLRAYAAGALLSQAISNVPAAILLSEFTRDWRAL
AFGVSVGGFGIAIGSLANLIAIRLSRTRGMWLPFHLVSIPFGIASAVLGALLLHYF

Specific function: Unknown

COG id: COG0471

COG function: function code P; Di- and tricarboxylate transporters

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CitM (TC 2.A.11) transporter family [H]

Homologues:

Organism=Escherichia coli, GI1787039, Length=327, Percent_Identity=40.3669724770642, Blast_Score=229, Evalue=3e-61,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004680 [H]

Pfam domain/function: PF03600 CitMHS [H]

EC number: NA

Molecular weight: Translated: 40483; Mature: 40352

Theoretical pI: Translated: 11.71; Mature: 11.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNSVVGRATARIIAFVRHEPVLSILVAALIALQLVRPQSAGALVRLVDWQTVATLAGLL
CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHH
MLTKALELSGFLMWLAHRIVHRVRSERALAALLVVFAASLSVWLTNDVALFVVIPLVLSL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
RELTPLPFKRLVIYIALAVNAGAIATPLGNPQNLFLWQLSGISFGRFVIALGPLALVLMA
HHCCCCCHHHHHHHHHHHHCCCCEECCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHH
LLLAMTAIAFDGRPLDLSKDHAERPVDRAHAFATVAMFAGFVLLADAHHALAGVLAVAAI
HHHHHHHHHCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FLIVRRDAVLKIDWLLLLIFVLMFIVLRSAALLPAVHRTIADIGLDTPLRAYAAGALLSQ
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
AISNVPAAILLSEFTRDWRALAFGVSVGGFGIAIGSLANLIAIRLSRTRGMWLPFHLVSI
HHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHH
PFGIASAVLGALLLHYF
HHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SNSVVGRATARIIAFVRHEPVLSILVAALIALQLVRPQSAGALVRLVDWQTVATLAGLL
CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHH
MLTKALELSGFLMWLAHRIVHRVRSERALAALLVVFAASLSVWLTNDVALFVVIPLVLSL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
RELTPLPFKRLVIYIALAVNAGAIATPLGNPQNLFLWQLSGISFGRFVIALGPLALVLMA
HHCCCCCHHHHHHHHHHHHCCCCEECCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHH
LLLAMTAIAFDGRPLDLSKDHAERPVDRAHAFATVAMFAGFVLLADAHHALAGVLAVAAI
HHHHHHHHHCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FLIVRRDAVLKIDWLLLLIFVLMFIVLRSAALLPAVHRTIADIGLDTPLRAYAAGALLSQ
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
AISNVPAAILLSEFTRDWRALAFGVSVGGFGIAIGSLANLIAIRLSRTRGMWLPFHLVSI
HHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHH
PFGIASAVLGALLLHYF
HHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]