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The map label for this gene is hofB [C]

Identifier: 83720268

GI number: 83720268

Start: 2897507

End: 2898847

Strand: Reverse

Name: hofB [C]

Synonym: BTH_I2540

Alternate gene names: 83720268

Gene position: 2898847-2897507 (Counterclockwise)

Preceding gene: 83721217

Following gene: 83719714

Centisome position: 76.1

GC content: 67.26

Gene sequence:

>1341_bases
ATGGCACACGACATTCAATTTGCCGACGGGGCGACGCCGTTCTCGCAAACGCAGCAGTTTCACGACATCAAGAACGCCGC
GCACGAGCATCTGCTGACGCGCATCGAGGAGCTGGGCGCGGAGTTCGGGCGCTGGTCGCGGCAGGCGATCAACCAGTTCG
TCGATCTCGAGATCGACAGCTTTGTGCGGTTGCGCCGCATTCCGCTCAACGAGAACGAGGTGCGCGCGGTCGCGCAGGCG
CTGACCAAGGAGCTCGCGGGTTTCGGGCCGATCGAGGACCTGCTCGCCGATCCGAACGTCGAGGACATCCTGATCAACGG
CTACAGCGACGTCTACGTGTCGAAGCACGGAATCCTGACGAAGCTGCCCGTGCGCTTCACCGACAACGCGCACCTGCTGC
GCATCGTGCGGCGCATTCTCGCGCCGATCGGCCGCCGGCTCGACGAGTCGAATCCGATGGTCGACGCGCGGCTGCCGGAC
GGCGGGCGCGTGAACGTCGTGATCGAGCCGCTGTCGATCGACGGCCCGGTCGTGTCGATCCGCAAGTTCCGCAAGGACCC
GCTGAAGCCGGCCGATCTGCTCGCGAACGGCACGTTCAACGAAGAGATCGGCGCGCTGCTCGAAGCCGCGGTCGCCGCGC
GCTGCAACATCCTCGTGTCGGGCGGCACGAGCTCCGGCAAGACATCGCTCCTGAACGCGCTCGCGTTCCACATTCCCGAA
GCCGAGCGCGTCGTGACGATCGAGGACACGGCGGAGCTGTCGCTCAACCACCCGCATGTGGTGCGGCTCGAGAGCCGGCC
GGGCGGCTTCGACGGCACGGGCGTCGTGTCGATCCGCGACCTGCTGCGCAACACGCTGCGGATGCGCCCGGACCGGATCA
TCGTCGGCGAAGTGCGCGGCGGCGAGGTGCTCGAGATGATGCAGGCGATGAATACCGGCCACGATGGCTCGATGGGCACG
ATCCACGCGAGCTCGCCGCGCGAGTGCCTGTACCGCCTCGAGATGCTCGCCGGCTTCGCGGGCTTTCAGGGCACCGAATC
GAGCCTGCGCCGGCAGATCTCGAACGCGGTCGACTTCATCGTCCAGATCGGGCGGCTGTCGAACGGGCGGCGGCGTATCC
TGTCGGTCACCGAGGTGACCGGGCTGTCCGACAACATCATCGCGACGCAGGAGCTCTATCGCTACGAGCCGCGCGTGAAC
GCGGACGGCGATGAGATCGACGCGTGGGAATCGCTCGGCATCCATCCGCATTCGCCGAAGCTCGCGCGCTTCAGGCAGGC
GCTGTCGGGCGGCGGCTTCGGCGGCGAGCCTTACGGCCGCGGCGGGGGCTTCAATGTCTAG

Upstream 100 bases:

>100_bases
ACGCGCGACGGGCGGCGCGGGGGCCGCCGCGCCGCGCCCGGCGGGCGGCCTTTCCGCGCTCAGGCGCTTCATTCAACCCA
CCTCCAAGCGGTCGTAAGAG

Downstream 100 bases:

>100_bases
CGCGGCGCTTTGGGCGCTTGCGCTCGCGCTGCTGTGCGTCGCCGGGGCGCTCGCACTGTGGCGGCGCGGCGAGGCGAACA
AGGAGCGCGCGCACGCGGCG

Product: type II/IV secretion system protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 446; Mature: 445

Protein sequence:

>446_residues
MAHDIQFADGATPFSQTQQFHDIKNAAHEHLLTRIEELGAEFGRWSRQAINQFVDLEIDSFVRLRRIPLNENEVRAVAQA
LTKELAGFGPIEDLLADPNVEDILINGYSDVYVSKHGILTKLPVRFTDNAHLLRIVRRILAPIGRRLDESNPMVDARLPD
GGRVNVVIEPLSIDGPVVSIRKFRKDPLKPADLLANGTFNEEIGALLEAAVAARCNILVSGGTSSGKTSLLNALAFHIPE
AERVVTIEDTAELSLNHPHVVRLESRPGGFDGTGVVSIRDLLRNTLRMRPDRIIVGEVRGGEVLEMMQAMNTGHDGSMGT
IHASSPRECLYRLEMLAGFAGFQGTESSLRRQISNAVDFIVQIGRLSNGRRRILSVTEVTGLSDNIIATQELYRYEPRVN
ADGDEIDAWESLGIHPHSPKLARFRQALSGGGFGGEPYGRGGGFNV

Sequences:

>Translated_446_residues
MAHDIQFADGATPFSQTQQFHDIKNAAHEHLLTRIEELGAEFGRWSRQAINQFVDLEIDSFVRLRRIPLNENEVRAVAQA
LTKELAGFGPIEDLLADPNVEDILINGYSDVYVSKHGILTKLPVRFTDNAHLLRIVRRILAPIGRRLDESNPMVDARLPD
GGRVNVVIEPLSIDGPVVSIRKFRKDPLKPADLLANGTFNEEIGALLEAAVAARCNILVSGGTSSGKTSLLNALAFHIPE
AERVVTIEDTAELSLNHPHVVRLESRPGGFDGTGVVSIRDLLRNTLRMRPDRIIVGEVRGGEVLEMMQAMNTGHDGSMGT
IHASSPRECLYRLEMLAGFAGFQGTESSLRRQISNAVDFIVQIGRLSNGRRRILSVTEVTGLSDNIIATQELYRYEPRVN
ADGDEIDAWESLGIHPHSPKLARFRQALSGGGFGGEPYGRGGGFNV
>Mature_445_residues
AHDIQFADGATPFSQTQQFHDIKNAAHEHLLTRIEELGAEFGRWSRQAINQFVDLEIDSFVRLRRIPLNENEVRAVAQAL
TKELAGFGPIEDLLADPNVEDILINGYSDVYVSKHGILTKLPVRFTDNAHLLRIVRRILAPIGRRLDESNPMVDARLPDG
GRVNVVIEPLSIDGPVVSIRKFRKDPLKPADLLANGTFNEEIGALLEAAVAARCNILVSGGTSSGKTSLLNALAFHIPEA
ERVVTIEDTAELSLNHPHVVRLESRPGGFDGTGVVSIRDLLRNTLRMRPDRIIVGEVRGGEVLEMMQAMNTGHDGSMGTI
HASSPRECLYRLEMLAGFAGFQGTESSLRRQISNAVDFIVQIGRLSNGRRRILSVTEVTGLSDNIIATQELYRYEPRVNA
DGDEIDAWESLGIHPHSPKLARFRQALSGGGFGGEPYGRGGGFNV

Specific function: Unknown

COG id: COG4962

COG function: function code U; Flp pilus assembly protein, ATPase CpaF

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP E family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022399
- InterPro:   IPR001482 [H]

Pfam domain/function: PF00437 GSPII_E [H]

EC number: NA

Molecular weight: Translated: 48967; Mature: 48836

Theoretical pI: Translated: 6.20; Mature: 6.20

Prosite motif: PS00387 PPASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAHDIQFADGATPFSQTQQFHDIKNAAHEHLLTRIEELGAEFGRWSRQAINQFVDLEIDS
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
FVRLRRIPLNENEVRAVAQALTKELAGFGPIEDLLADPNVEDILINGYSDVYVSKHGILT
HHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCEEEEECCCEEEEECCCCEE
KLPVRFTDNAHLLRIVRRILAPIGRRLDESNPMVDARLPDGGRVNVVIEPLSIDGPVVSI
ECCEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCEEEEEEEECCCCCCHHHH
RKFRKDPLKPADLLANGTFNEEIGALLEAAVAARCNILVSGGTSSGKTSLLNALAFHIPE
HHHHCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHCEEEEECCCCCCHHHHHHHHHHHCCC
AERVVTIEDTAELSLNHPHVVRLESRPGGFDGTGVVSIRDLLRNTLRMRPDRIIVGEVRG
CCEEEEEECCCEEECCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCC
GEVLEMMQAMNTGHDGSMGTIHASSPRECLYRLEMLAGFAGFQGTESSLRRQISNAVDFI
CHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
VQIGRLSNGRRRILSVTEVTGLSDNIIATQELYRYEPRVNADGDEIDAWESLGIHPHSPK
HHHHHCCCCCHHEEEEHHHCCCCCCCCHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCCH
LARFRQALSGGGFGGEPYGRGGGFNV
HHHHHHHHHCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
AHDIQFADGATPFSQTQQFHDIKNAAHEHLLTRIEELGAEFGRWSRQAINQFVDLEIDS
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
FVRLRRIPLNENEVRAVAQALTKELAGFGPIEDLLADPNVEDILINGYSDVYVSKHGILT
HHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCEEEEECCCEEEEECCCCEE
KLPVRFTDNAHLLRIVRRILAPIGRRLDESNPMVDARLPDGGRVNVVIEPLSIDGPVVSI
ECCEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCEEEEEEEECCCCCCHHHH
RKFRKDPLKPADLLANGTFNEEIGALLEAAVAARCNILVSGGTSSGKTSLLNALAFHIPE
HHHHCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHCEEEEECCCCCCHHHHHHHHHHHCCC
AERVVTIEDTAELSLNHPHVVRLESRPGGFDGTGVVSIRDLLRNTLRMRPDRIIVGEVRG
CCEEEEEECCCEEECCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCC
GEVLEMMQAMNTGHDGSMGTIHASSPRECLYRLEMLAGFAGFQGTESSLRRQISNAVDFI
CHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
VQIGRLSNGRRRILSVTEVTGLSDNIIATQELYRYEPRVNADGDEIDAWESLGIHPHSPK
HHHHHCCCCCHHEEEEHHHCCCCCCCCHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCCH
LARFRQALSGGGFGGEPYGRGGGFNV
HHHHHHHHHCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12218036; 9634230 [H]