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The map label for this gene is yhjC [H]

Identifier: 83720032

GI number: 83720032

Start: 3234236

End: 3235135

Strand: Direct

Name: yhjC [H]

Synonym: BTH_I2818

Alternate gene names: 83720032

Gene position: 3234236-3235135 (Clockwise)

Preceding gene: 83718480

Following gene: 83721029

Centisome position: 84.91

GC content: 69.78

Gene sequence:

>900_bases
ATGGACCGCATTGACCTCTTTCGCGTGTTCGCGCGCGTCGTCGAATGCGCGAACTTCACCCGCGCGGCCGATACGCTCGG
CATGCCGCGCTCGTCGGTATCGGCGGCGATCCAGGAGCTGGAGGGCCGCGTCGGCGCGCGGCTCTTGTACCGCACGACCC
GCAAGGTGACGCCGACGCAGGACGGCGCCGCGCTCTACGAACGCTGCCTGCGCCTCATCGCGGACGTCGAGGAAACCGAG
AATCTGTTCCGCCATTCGACCGTCGGGCCGAGCGGCACATTGCGCGTCGACATGCCGGGGCGCATCGGACGCCTGATCGT
CGCGCCCGCGCTGCCCGAGTTTCTCGACCGCTACCCGCAGATCAGCGTCGAGCTCGGCCTCACCGACCGCGCGGTGAACC
TGATCGAGGAGCGCGTCGACTGCGTGCTGCGCGTCGGCACGCTGAGCGACTCCGGCCTCGTCGCGCGCGCGATCGGCGAC
CTGCCGCTCATCAACGTCGCGAGCCCCGCGTATCTCGCGCGCCACGGCGTGCCGCGCACGCCCGCCGATCTCGAGCGCCA
TCAGCCCGTCAACTACGCGTCGCCGACGAACGGGCGCATCGCGCCGTGGGAATGGGTCGAAGGCGATGCGGTGAAGCGCG
TCGCGCTGCGCGGGCGCGTGACCGTCAACAGCGCGGAGGCGTACATCGCGTGCTGCCTGTCGGGACTCGGCCTCATCCAG
ATTCCCGCGTACGACGTCGACGCTCACCTGCGCGCGGGCGAACTCGTCGAAGTGCTGCCGAACCATCGCGCGGCGCCGAT
GCCGATGACGCTGCTGTATCCGCACCGCCAGCATCTGTCGCGGCGTTTTCAGGTGTTCGCGCAATGGCTGGAGGCGCTGC
TGCGGGCAAAGGTGCTGTAG

Upstream 100 bases:

>100_bases
ATGACCTTGCTCGCCCTTCCGCCCGCCCCCGCGCTCGCGCCGCCCGCCGCATCCGATACGGTGGGCGAGTTGCGCGTCGC
GCATCGTCACGGAGCCGTCG

Downstream 100 bases:

>100_bases
GCGTTGCAGGCATCGAGGCGCGCCCGCCTCGATCGCCGCGCCTCGCCCGGCCGGCGTGGCGGCCGATCGACAAATATTAC
CCGGATGTTATTGACCATCA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 299; Mature: 299

Protein sequence:

>299_residues
MDRIDLFRVFARVVECANFTRAADTLGMPRSSVSAAIQELEGRVGARLLYRTTRKVTPTQDGAALYERCLRLIADVEETE
NLFRHSTVGPSGTLRVDMPGRIGRLIVAPALPEFLDRYPQISVELGLTDRAVNLIEERVDCVLRVGTLSDSGLVARAIGD
LPLINVASPAYLARHGVPRTPADLERHQPVNYASPTNGRIAPWEWVEGDAVKRVALRGRVTVNSAEAYIACCLSGLGLIQ
IPAYDVDAHLRAGELVEVLPNHRAAPMPMTLLYPHRQHLSRRFQVFAQWLEALLRAKVL

Sequences:

>Translated_299_residues
MDRIDLFRVFARVVECANFTRAADTLGMPRSSVSAAIQELEGRVGARLLYRTTRKVTPTQDGAALYERCLRLIADVEETE
NLFRHSTVGPSGTLRVDMPGRIGRLIVAPALPEFLDRYPQISVELGLTDRAVNLIEERVDCVLRVGTLSDSGLVARAIGD
LPLINVASPAYLARHGVPRTPADLERHQPVNYASPTNGRIAPWEWVEGDAVKRVALRGRVTVNSAEAYIACCLSGLGLIQ
IPAYDVDAHLRAGELVEVLPNHRAAPMPMTLLYPHRQHLSRRFQVFAQWLEALLRAKVL
>Mature_299_residues
MDRIDLFRVFARVVECANFTRAADTLGMPRSSVSAAIQELEGRVGARLLYRTTRKVTPTQDGAALYERCLRLIADVEETE
NLFRHSTVGPSGTLRVDMPGRIGRLIVAPALPEFLDRYPQISVELGLTDRAVNLIEERVDCVLRVGTLSDSGLVARAIGD
LPLINVASPAYLARHGVPRTPADLERHQPVNYASPTNGRIAPWEWVEGDAVKRVALRGRVTVNSAEAYIACCLSGLGLIQ
IPAYDVDAHLRAGELVEVLPNHRAAPMPMTLLYPHRQHLSRRFQVFAQWLEALLRAKVL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=295, Percent_Identity=41.0169491525424, Blast_Score=242, Evalue=3e-65,
Organism=Escherichia coli, GI1786401, Length=289, Percent_Identity=32.5259515570934, Blast_Score=155, Evalue=2e-39,
Organism=Escherichia coli, GI1787589, Length=283, Percent_Identity=31.8021201413428, Blast_Score=151, Evalue=5e-38,
Organism=Escherichia coli, GI1789639, Length=287, Percent_Identity=31.7073170731707, Blast_Score=151, Evalue=6e-38,
Organism=Escherichia coli, GI1787128, Length=287, Percent_Identity=28.5714285714286, Blast_Score=131, Evalue=4e-32,
Organism=Escherichia coli, GI1789440, Length=292, Percent_Identity=26.7123287671233, Blast_Score=119, Evalue=3e-28,
Organism=Escherichia coli, GI87081978, Length=284, Percent_Identity=30.6338028169014, Blast_Score=118, Evalue=5e-28,
Organism=Escherichia coli, GI1788481, Length=302, Percent_Identity=26.158940397351, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI1788706, Length=185, Percent_Identity=29.7297297297297, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI1789173, Length=191, Percent_Identity=26.7015706806283, Blast_Score=65, Evalue=8e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33099; Mature: 33099

Theoretical pI: Translated: 8.48; Mature: 8.48

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRIDLFRVFARVVECANFTRAADTLGMPRSSVSAAIQELEGRVGARLLYRTTRKVTPTQ
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
DGAALYERCLRLIADVEETENLFRHSTVGPSGTLRVDMPGRIGRLIVAPALPEFLDRYPQ
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCEEECCCCHHHHHHCCC
ISVELGLTDRAVNLIEERVDCVLRVGTLSDSGLVARAIGDLPLINVASPAYLARHGVPRT
EEEEECCCHHHHHHHHHHHHHHEEECCCCCCCHHHHHHCCCCEEECCCHHHHHHCCCCCC
PADLERHQPVNYASPTNGRIAPWEWVEGDAVKRVALRGRVTVNSAEAYIACCLSGLGLIQ
CCHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCEEECCHHHHHHHHHHCCCEEE
IPAYDVDAHLRAGELVEVLPNHRAAPMPMTLLYPHRQHLSRRFQVFAQWLEALLRAKVL
ECCCCCCCCCCCCHHHHHCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MDRIDLFRVFARVVECANFTRAADTLGMPRSSVSAAIQELEGRVGARLLYRTTRKVTPTQ
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
DGAALYERCLRLIADVEETENLFRHSTVGPSGTLRVDMPGRIGRLIVAPALPEFLDRYPQ
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCEEECCCCHHHHHHCCC
ISVELGLTDRAVNLIEERVDCVLRVGTLSDSGLVARAIGDLPLINVASPAYLARHGVPRT
EEEEECCCHHHHHHHHHHHHHHEEECCCCCCCHHHHHHCCCCEEECCCHHHHHHCCCCCC
PADLERHQPVNYASPTNGRIAPWEWVEGDAVKRVALRGRVTVNSAEAYIACCLSGLGLIQ
CCHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCEEECCHHHHHHHHHHCCCEEE
IPAYDVDAHLRAGELVEVLPNHRAAPMPMTLLYPHRQHLSRRFQVFAQWLEALLRAKVL
ECCCCCCCCCCCCHHHHHCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]