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The map label for this gene is ygeR [H]

Identifier: 83719959

GI number: 83719959

Start: 3163439

End: 3164326

Strand: Direct

Name: ygeR [H]

Synonym: BTH_I2752

Alternate gene names: 83719959

Gene position: 3163439-3164326 (Clockwise)

Preceding gene: 83720031

Following gene: 83719025

Centisome position: 83.05

GC content: 68.13

Gene sequence:

>888_bases
ATGCGGCGCGGCTCCCCTCGCGAGCGTCTGCCGCGCCGCCCCGCCTCACCCGCACGCATCCTTCCACGCAAGCCCTTCCG
ACGCCGATGCTGGCCCGAAACGGCGAGGCCCGTACCGAACCCGTTAAAATTAGACGTTTTTGTATCCGCCGCCGCGCACC
GTCGCGGCGGCGCCTTGCGAGGTTCAATGTTTCTGAAAACAACGAGACGACTCGTCGTCGCATCGCTTGCCGCGCTGCTC
GCCGCGTGCGGCTCGACGCCCGTCGGTCCCGGCTTCTACCGGGTCGAGCGCGGCGACACGCTCTCCAAGATCGCGCGATC
GAACCGCCAGTCGGTCGCGAACATCGTCCGCTGGAACCAGATCACGAATCCCGACGCGATCGAAGTCGGTCAAGTACTGC
GCATCGCGCCGCCGCCCGGCTCCGCGTCGACGCCGGGCACGACGAGCGCATCGCGTAGCCCGAGTCGCCCGGCGCCCTCG
TCGCCCGCCACATCGTCCGCGCCTTCCGTGAAGCCCGCGTCGAGCATCTCACTCGTCTGGCCCGCCGCCGGCAACGTGAT
CCGCTCGTTCGACGGAGCGAAATCGAAGGGCATCGACATCGCGAACACCGCAGGCACGCCCGTCCTCGCGGCGGCGGCCG
GCACGGTCGTCTATGCGGGCAACGGCCTGCGCGGCTATGGCAATCTGCTGATCATCAAGCACAACGCCGATTTTCTGACG
ACGTACGCGCACAACCGCACGCTGCTCGCGAAGGAAGGCCAGACGGTCGCGCAGGGGCAGAAGATCGCGGAGATGGGTGA
TACCGACAACGATCGCGTCGCGCTGCACTTCGAGCTGCGCTACGGCGGCCGCTCGATCGATCCCGCCCGCTACCTGCCGT
CGCGCTGA

Upstream 100 bases:

>100_bases
GCGGCATGTCGCGCCCGGCGCGACGGAAACCGCCGCGCTGCGCATTCGCGTGACGCCGCTCGCCTGACGCGCCCGGCCGG
CGTCGGCGCGCGCCCGCACG

Downstream 100 bases:

>100_bases
CGCGGCGCAGCGCGCACGACGGCGCGACGTACGCAGTCCGGCGCGTGCCGGGCGAACGGATCAGGAATGCGATCAGCGTT
TGCGCAGCCGGCCGTGCAGA

Product: lipoprotein NlpD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 295; Mature: 295

Protein sequence:

>295_residues
MRRGSPRERLPRRPASPARILPRKPFRRRCWPETARPVPNPLKLDVFVSAAAHRRGGALRGSMFLKTTRRLVVASLAALL
AACGSTPVGPGFYRVERGDTLSKIARSNRQSVANIVRWNQITNPDAIEVGQVLRIAPPPGSASTPGTTSASRSPSRPAPS
SPATSSAPSVKPASSISLVWPAAGNVIRSFDGAKSKGIDIANTAGTPVLAAAAGTVVYAGNGLRGYGNLLIIKHNADFLT
TYAHNRTLLAKEGQTVAQGQKIAEMGDTDNDRVALHFELRYGGRSIDPARYLPSR

Sequences:

>Translated_295_residues
MRRGSPRERLPRRPASPARILPRKPFRRRCWPETARPVPNPLKLDVFVSAAAHRRGGALRGSMFLKTTRRLVVASLAALL
AACGSTPVGPGFYRVERGDTLSKIARSNRQSVANIVRWNQITNPDAIEVGQVLRIAPPPGSASTPGTTSASRSPSRPAPS
SPATSSAPSVKPASSISLVWPAAGNVIRSFDGAKSKGIDIANTAGTPVLAAAAGTVVYAGNGLRGYGNLLIIKHNADFLT
TYAHNRTLLAKEGQTVAQGQKIAEMGDTDNDRVALHFELRYGGRSIDPARYLPSR
>Mature_295_residues
MRRGSPRERLPRRPASPARILPRKPFRRRCWPETARPVPNPLKLDVFVSAAAHRRGGALRGSMFLKTTRRLVVASLAALL
AACGSTPVGPGFYRVERGDTLSKIARSNRQSVANIVRWNQITNPDAIEVGQVLRIAPPPGSASTPGTTSASRSPSRPAPS
SPATSSAPSVKPASSISLVWPAAGNVIRSFDGAKSKGIDIANTAGTPVLAAAAGTVVYAGNGLRGYGNLLIIKHNADFLT
TYAHNRTLLAKEGQTVAQGQKIAEMGDTDNDRVALHFELRYGGRSIDPARYLPSR

Specific function: Unknown

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87082174, Length=237, Percent_Identity=44.7257383966245, Blast_Score=178, Evalue=3e-46,
Organism=Escherichia coli, GI1789099, Length=257, Percent_Identity=35.7976653696498, Blast_Score=150, Evalue=9e-38,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF01551 Peptidase_M23 [H]

EC number: NA

Molecular weight: Translated: 31425; Mature: 31425

Theoretical pI: Translated: 11.98; Mature: 11.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRGSPRERLPRRPASPARILPRKPFRRRCWPETARPVPNPLKLDVFVSAAAHRRGGALR
CCCCCCHHHCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCEEEEEEEEEHHHHCCCCCC
GSMFLKTTRRLVVASLAALLAACGSTPVGPGFYRVERGDTLSKIARSNRQSVANIVRWNQ
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCC
ITNPDAIEVGQVLRIAPPPGSASTPGTTSASRSPSRPAPSSPATSSAPSVKPASSISLVW
CCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE
PAAGNVIRSFDGAKSKGIDIANTAGTPVLAAAAGTVVYAGNGLRGYGNLLIIKHNADFLT
CCCCCHHHHCCCCCCCCCEEECCCCCCEEEECCCEEEEECCCCCCCCCEEEEEECCCEEE
TYAHNRTLLAKEGQTVAQGQKIAEMGDTDNDRVALHFELRYGGRSIDPARYLPSR
EECCCEEEEECCCCHHHHCHHHHHCCCCCCCEEEEEEEEEECCCCCCHHHCCCCC
>Mature Secondary Structure
MRRGSPRERLPRRPASPARILPRKPFRRRCWPETARPVPNPLKLDVFVSAAAHRRGGALR
CCCCCCHHHCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCEEEEEEEEEHHHHCCCCCC
GSMFLKTTRRLVVASLAALLAACGSTPVGPGFYRVERGDTLSKIARSNRQSVANIVRWNQ
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCC
ITNPDAIEVGQVLRIAPPPGSASTPGTTSASRSPSRPAPSSPATSSAPSVKPASSISLVW
CCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE
PAAGNVIRSFDGAKSKGIDIANTAGTPVLAAAAGTVVYAGNGLRGYGNLLIIKHNADFLT
CCCCCHHHHCCCCCCCCCEEECCCCCCEEEECCCEEEEECCCCCCCCCEEEEEECCCEEE
TYAHNRTLLAKEGQTVAQGQKIAEMGDTDNDRVALHFELRYGGRSIDPARYLPSR
EECCCEEEEECCCCHHHHCHHHHHCCCCCCCEEEEEEEEEECCCCCCHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]