| Definition | Burkholderia thailandensis E264 chromosome chromosome I, complete sequence. |
|---|---|
| Accession | NC_007651 |
| Length | 3,809,201 |
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The map label for this gene is recD [H]
Identifier: 83719901
GI number: 83719901
Start: 3268223
End: 3270922
Strand: Reverse
Name: recD [H]
Synonym: BTH_I2850
Alternate gene names: 83719901
Gene position: 3270922-3268223 (Counterclockwise)
Preceding gene: 83720729
Following gene: 83718425
Centisome position: 85.87
GC content: 74.33
Gene sequence:
>2700_bases ATGAGCGTGGTCGACGAACGTTTCGCATGGACGGGCGGTCTGGCGGACCGCCTGCCCGAGCCGGCCGATTTCGGGCTCGC GCTTGCCGAAGGTTTCGCGCGCCGGATCGGGATGCTGTCGCGCCGCGTCGGCGCGAGCGCCGCGGCCGCGCGCTGGGCGG CGCGCGCGGCGTTCGCCGCGAGCCGCGCGACGGCGGCGGGGCACGTCTGCGTGTCGCTGCGCGCGCTCGCGCAACGCTAC GACGAGCCGTTCGCCGACGTGCGCGACGCGCTCGCCGCGAGCGGCGTGACCGCGTTCGACAGCATCGCGCGCGGCGCCGA GCGTCCGCTCGTCGTCGACCGCGACGGCCGGCTGTATCTCGCGCGCTACTTCGAATACGAGACGCGGCTTGCGAGCGCGC TCGTCGCGCGCGCCCGGTGCGGCGGCGCGCAAGCGGGCGATGCCGGCGAATTGATGCCCGAGGCGCTCGGCGAACGGCTC GTCCGCTATTTCGGGCCGCAGAAGGAGCGGGGCGTCGACTGGCAGCGCGTCGCGGCGCTCGTCGCGCTCACGGGCCGGGT GACGATCGTGAGCGGCGGGCCGGGCACCGGCAAGACGACGACGGTCGTCGGCGTGATCGCGTGTCTGCTCGACGCGCACC CCGACTTGCGGATCGCGCTCGCCGCGCCGACCGGCAAGGCGGCGCAGCGGATGCAGGAGGCGCTGCACGCACGCGCCGGC AGCCTGCCGGCCGAGCTCGCGGCGCGTCTGCCGCGCACGTCCTATACGCTGCACCGGCTGCTGGGCGGCGGTCCGGGCGG GCGCTTCGCGCATCATCGCGACAACCCGTTGCCATACGATCTCGTCGTCGTCGACGAGGCGTCGATGATCGACGTCGCGC TCGCCGCGCACTTGCTCGATGCGCTCGCGCCGAACGCGCGCCTCGTGCTGCTCGGCGACAAGGATCAGCTCGCGGCCGTC GAGGCGGGTGCGGTGTTTGCCGAGCTGAGCGCGCGTCCCGCGTTCAGCTCGGCGACGTGCGCGACGATTGCGCGCGCGCT CGGCGTCGGAGAGGCCGAATTCGTGGCGGCGCTGCCGCAGGGGGGCGTTCTGCATGCGGCCGATGCGGCGAACGCGGGCG CGAGCGCGGACGCACGCGCGACTTCGGTCGACACGGGCGCGGCGGCGCTGGCCGCACGAGCGACGGGTGCCGTCGCCGCG GCGAAGGTCGCGCCGGAAGCCCCGGCTCAGCGCGCGCCGGCGCCGCGCGCGGGCCGGCGCGGCGGCGGGCGCGAATCGAA ACGGGGTGTCGACGACGCGCAGGGATGGCTGTTCGCGTTCGAAGACGAAGATGCGTTCAGCGCGGAGGCGTCAGGTGCCG GTGCGTCAGGCGCCGATGAGTCGGGCGCGGAGGCGTTGGGCGTCGGTACGTCGGGTGCCGATGCGCAGGATGTCGGCACG TCGAGCATCGATCGCCGCGACGATCGTGCATCGCTTGATACCCCGCGCCGCCGGCGTGACGCGCTCGCCACGCATGTTCG AGCGGATTCGCCGGGCGCGCGCGACATTGAAAACGCCGCGTACGTGCACGCACAGGCCGATGAAGCCGGCGTCGCCGATT TGCCGTGGGATGCGTCTTTCGCCGAGCCCGCCGCGTGGATCGAGGCTGGCGAACTCGAGTGGCTCGACAACGCGGACTTT TCGATATCCGAAGGCGCTTCGGCGAATGCCGGCTCCGATGAGCGGCGAACCGCGACGGCAACGGATGCAAGCGCCGGCGG CGCGCGCGCACAGGCCGGCCGGGTGCCCGCCGCCCACGCCGGGCCGGATATCGAACCGCAAGCGTCGGCACCGGCGAACC CGGCCGGGGCCCCGTCACCGGACGCCGATGCCGCCGCCGCGCCGTTGACCGACTGCGTCATCTGGCTCGAACGCAATTAC CGCTTCGGCCTCGACTCGCCGATCGGCAGGCTGTCGCTCGCGATCCGCCGCGGCGCCGTGCAGGACGCGCTCGATGCGTT GTCGACGGCCGACGACGCGGCCGCGCGCTGGTGCGACGACGGCGGCGCGACGCTGTCGGCCGCGACGGTCGGGCAACTCG CGCGGGGCTTCGCCGGCTACGCGGCCGCGTTGCGCGACGCGCTCGCGACGCCCGATCCCGATCCGCTGCCGCTCTTCGAC GTGCTCAACCGCTTTCGCGTGCTCTGCGCGACGCGAACGGGCGCGCGCGGCGCGGACGAGGTCAACGCGCTCGTCGCGGC CGAGGTGCGGCGAGCGGTGCGCGTGCCGCTCGCGCTCGGCGCGCACTGGTTCGCGGGGCGGCCCGTGATGGTGACGCGCA ACGATTACGCGCTCGGACTCTTCAATGGCGACATCGGCATTGCGCTGCCCGGCGCGCGTGGCGCGTTGCGCGTCTGGTTC CGCGGCGCGGACGGCCGCGCGCGCGCGGTGTCGCCCGCCGCGCTGCCGCCGCACGATACGGCGTTCGCGCTGACCGTCCA CAAATCGCAGGGCTCGGAGTTCGACGACGCGGCGCTGGTCCTGCCCGCGTCGTTCAACCGTGTGCTGTCGCGCGAGCTTG TCTACACCGCGATCACGCGCGCGCGCTCGCGCGTGCGCGTGATCGGCGCGCGCGCGGTGCTCGCGCTCGCGATCGCGACG CGCACGGCGCGCGATTCCGGTCTCGCCGCACGGATCGCCGATGCGCTGCGCACACGATAG
Upstream 100 bases:
>100_bases CCGATTGGCGAAGCGGCGGCGCGAGCGCCGGCGTGCACGCGCGCCGGCCCGCGCGCGCGCTGATCGAGGCGCTCGACGCG CTGATGCTCGAGGGGGGCGC
Downstream 100 bases:
>100_bases GAGGGCGCGCGATGACGCTGCGCTACGCATTTTCGCCGGACGAGGTCGAGCTGACGGCGGTTCGCGCGCAAGGCGCGGGC GGACAGAACGTCAACAAGGT
Product: exodeoxyribonuclease V subunit alpha
Products: NA
Alternate protein names: Exodeoxyribonuclease V 67 kDa polypeptide [H]
Number of amino acids: Translated: 899; Mature: 898
Protein sequence:
>899_residues MSVVDERFAWTGGLADRLPEPADFGLALAEGFARRIGMLSRRVGASAAAARWAARAAFAASRATAAGHVCVSLRALAQRY DEPFADVRDALAASGVTAFDSIARGAERPLVVDRDGRLYLARYFEYETRLASALVARARCGGAQAGDAGELMPEALGERL VRYFGPQKERGVDWQRVAALVALTGRVTIVSGGPGTGKTTTVVGVIACLLDAHPDLRIALAAPTGKAAQRMQEALHARAG SLPAELAARLPRTSYTLHRLLGGGPGGRFAHHRDNPLPYDLVVVDEASMIDVALAAHLLDALAPNARLVLLGDKDQLAAV EAGAVFAELSARPAFSSATCATIARALGVGEAEFVAALPQGGVLHAADAANAGASADARATSVDTGAAALAARATGAVAA AKVAPEAPAQRAPAPRAGRRGGGRESKRGVDDAQGWLFAFEDEDAFSAEASGAGASGADESGAEALGVGTSGADAQDVGT SSIDRRDDRASLDTPRRRRDALATHVRADSPGARDIENAAYVHAQADEAGVADLPWDASFAEPAAWIEAGELEWLDNADF SISEGASANAGSDERRTATATDASAGGARAQAGRVPAAHAGPDIEPQASAPANPAGAPSPDADAAAAPLTDCVIWLERNY RFGLDSPIGRLSLAIRRGAVQDALDALSTADDAAARWCDDGGATLSAATVGQLARGFAGYAAALRDALATPDPDPLPLFD VLNRFRVLCATRTGARGADEVNALVAAEVRRAVRVPLALGAHWFAGRPVMVTRNDYALGLFNGDIGIALPGARGALRVWF RGADGRARAVSPAALPPHDTAFALTVHKSQGSEFDDAALVLPASFNRVLSRELVYTAITRARSRVRVIGARAVLALAIAT RTARDSGLAARIADALRTR
Sequences:
>Translated_899_residues MSVVDERFAWTGGLADRLPEPADFGLALAEGFARRIGMLSRRVGASAAAARWAARAAFAASRATAAGHVCVSLRALAQRY DEPFADVRDALAASGVTAFDSIARGAERPLVVDRDGRLYLARYFEYETRLASALVARARCGGAQAGDAGELMPEALGERL VRYFGPQKERGVDWQRVAALVALTGRVTIVSGGPGTGKTTTVVGVIACLLDAHPDLRIALAAPTGKAAQRMQEALHARAG SLPAELAARLPRTSYTLHRLLGGGPGGRFAHHRDNPLPYDLVVVDEASMIDVALAAHLLDALAPNARLVLLGDKDQLAAV EAGAVFAELSARPAFSSATCATIARALGVGEAEFVAALPQGGVLHAADAANAGASADARATSVDTGAAALAARATGAVAA AKVAPEAPAQRAPAPRAGRRGGGRESKRGVDDAQGWLFAFEDEDAFSAEASGAGASGADESGAEALGVGTSGADAQDVGT SSIDRRDDRASLDTPRRRRDALATHVRADSPGARDIENAAYVHAQADEAGVADLPWDASFAEPAAWIEAGELEWLDNADF SISEGASANAGSDERRTATATDASAGGARAQAGRVPAAHAGPDIEPQASAPANPAGAPSPDADAAAAPLTDCVIWLERNY RFGLDSPIGRLSLAIRRGAVQDALDALSTADDAAARWCDDGGATLSAATVGQLARGFAGYAAALRDALATPDPDPLPLFD VLNRFRVLCATRTGARGADEVNALVAAEVRRAVRVPLALGAHWFAGRPVMVTRNDYALGLFNGDIGIALPGARGALRVWF RGADGRARAVSPAALPPHDTAFALTVHKSQGSEFDDAALVLPASFNRVLSRELVYTAITRARSRVRVIGARAVLALAIAT RTARDSGLAARIADALRTR >Mature_898_residues SVVDERFAWTGGLADRLPEPADFGLALAEGFARRIGMLSRRVGASAAAARWAARAAFAASRATAAGHVCVSLRALAQRYD EPFADVRDALAASGVTAFDSIARGAERPLVVDRDGRLYLARYFEYETRLASALVARARCGGAQAGDAGELMPEALGERLV RYFGPQKERGVDWQRVAALVALTGRVTIVSGGPGTGKTTTVVGVIACLLDAHPDLRIALAAPTGKAAQRMQEALHARAGS LPAELAARLPRTSYTLHRLLGGGPGGRFAHHRDNPLPYDLVVVDEASMIDVALAAHLLDALAPNARLVLLGDKDQLAAVE AGAVFAELSARPAFSSATCATIARALGVGEAEFVAALPQGGVLHAADAANAGASADARATSVDTGAAALAARATGAVAAA KVAPEAPAQRAPAPRAGRRGGGRESKRGVDDAQGWLFAFEDEDAFSAEASGAGASGADESGAEALGVGTSGADAQDVGTS SIDRRDDRASLDTPRRRRDALATHVRADSPGARDIENAAYVHAQADEAGVADLPWDASFAEPAAWIEAGELEWLDNADFS ISEGASANAGSDERRTATATDASAGGARAQAGRVPAAHAGPDIEPQASAPANPAGAPSPDADAAAAPLTDCVIWLERNYR FGLDSPIGRLSLAIRRGAVQDALDALSTADDAAARWCDDGGATLSAATVGQLARGFAGYAAALRDALATPDPDPLPLFDV LNRFRVLCATRTGARGADEVNALVAAEVRRAVRVPLALGAHWFAGRPVMVTRNDYALGLFNGDIGIALPGARGALRVWFR GADGRARAVSPAALPPHDTAFALTVHKSQGSEFDDAALVLPASFNRVLSRELVYTAITRARSRVRVIGARAVLALAIATR TARDSGLAARIADALRTR
Specific function: Exhibits several catalytic activities, including ATP- dependent exonuclease, ATP-stimulated endonuclease, ATP-dependent unwinding and DNA-dependent ATPase activities. Strand cleavage occurs 5' to 3' during the unwinding of duplex DNA at CHI sequences, whi
COG id: COG0507
COG function: function code L; ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the recD family [H]
Homologues:
Organism=Escherichia coli, GI1789182, Length=267, Percent_Identity=43.8202247191011, Blast_Score=200, Evalue=3e-52,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003593 - InterPro: IPR007807 - InterPro: IPR006344 - InterPro: IPR000606 [H]
Pfam domain/function: PF05127 DUF699; PF01443 Viral_helicase1 [H]
EC number: =3.1.11.5 [H]
Molecular weight: Translated: 92760; Mature: 92629
Theoretical pI: Translated: 6.31; Mature: 6.31
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 1.4 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSVVDERFAWTGGLADRLPEPADFGLALAEGFARRIGMLSRRVGASAAAARWAARAAFAA CCCCCCHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH SRATAAGHVCVSLRALAQRYDEPFADVRDALAASGVTAFDSIARGAERPLVVDRDGRLYL HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHCCCCCCEEECCCCCEEE ARYFEYETRLASALVARARCGGAQAGDAGELMPEALGERLVRYFGPQKERGVDWQRVAAL HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH VALTGRVTIVSGGPGTGKTTTVVGVIACLLDAHPDLRIALAAPTGKAAQRMQEALHARAG HHHCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHCC SLPAELAARLPRTSYTLHRLLGGGPGGRFAHHRDNPLPYDLVVVDEASMIDVALAAHLLD CCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHH ALAPNARLVLLGDKDQLAAVEAGAVFAELSARPAFSSATCATIARALGVGEAEFVAALPQ HHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCHHHHEECCC GGVLHAADAANAGASADARATSVDTGAAALAARATGAVAAAKVAPEAPAQRAPAPRAGRR CCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHCHHHHHHCCCCCCHHCCCCCCCCCC GGGRESKRGVDDAQGWLFAFEDEDAFSAEASGAGASGADESGAEALGVGTSGADAQDVGT CCCCCHHCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCHHHCCC SSIDRRDDRASLDTPRRRRDALATHVRADSPGARDIENAAYVHAQADEAGVADLPWDASF CCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCC AEPAAWIEAGELEWLDNADFSISEGASANAGSDERRTATATDASAGGARAQAGRVPAAHA CCCHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCC GPDIEPQASAPANPAGAPSPDADAAAAPLTDCVIWLERNYRFGLDSPIGRLSLAIRRGAV CCCCCCCCCCCCCCCCCCCCCCCCHHCCHHHEEEEEECCCCCCCCCCHHHHHHHHHHHHH QDALDALSTADDAAARWCDDGGATLSAATVGQLARGFAGYAAALRDALATPDPDPLPLFD HHHHHHHHCCHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHH VLNRFRVLCATRTGARGADEVNALVAAEVRRAVRVPLALGAHWFAGRPVMVTRNDYALGL HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCHHHHCCHHHCCCCEEEECCCEEEEE FNGDIGIALPGARGALRVWFRGADGRARAVSPAALPPHDTAFALTVHKSQGSEFDDAALV EECCEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCEEE LPASFNRVLSRELVYTAITRARSRVRVIGARAVLALAIATRTARDSGLAARIADALRTR ECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCC >Mature Secondary Structure SVVDERFAWTGGLADRLPEPADFGLALAEGFARRIGMLSRRVGASAAAARWAARAAFAA CCCCCHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH SRATAAGHVCVSLRALAQRYDEPFADVRDALAASGVTAFDSIARGAERPLVVDRDGRLYL HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHCCCCCCEEECCCCCEEE ARYFEYETRLASALVARARCGGAQAGDAGELMPEALGERLVRYFGPQKERGVDWQRVAAL HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH VALTGRVTIVSGGPGTGKTTTVVGVIACLLDAHPDLRIALAAPTGKAAQRMQEALHARAG HHHCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHCC SLPAELAARLPRTSYTLHRLLGGGPGGRFAHHRDNPLPYDLVVVDEASMIDVALAAHLLD CCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHH ALAPNARLVLLGDKDQLAAVEAGAVFAELSARPAFSSATCATIARALGVGEAEFVAALPQ HHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCHHHHEECCC GGVLHAADAANAGASADARATSVDTGAAALAARATGAVAAAKVAPEAPAQRAPAPRAGRR CCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHCHHHHHHCCCCCCHHCCCCCCCCCC GGGRESKRGVDDAQGWLFAFEDEDAFSAEASGAGASGADESGAEALGVGTSGADAQDVGT CCCCCHHCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCHHHCCC SSIDRRDDRASLDTPRRRRDALATHVRADSPGARDIENAAYVHAQADEAGVADLPWDASF CCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCC AEPAAWIEAGELEWLDNADFSISEGASANAGSDERRTATATDASAGGARAQAGRVPAAHA CCCHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCC GPDIEPQASAPANPAGAPSPDADAAAAPLTDCVIWLERNYRFGLDSPIGRLSLAIRRGAV CCCCCCCCCCCCCCCCCCCCCCCCHHCCHHHEEEEEECCCCCCCCCCHHHHHHHHHHHHH QDALDALSTADDAAARWCDDGGATLSAATVGQLARGFAGYAAALRDALATPDPDPLPLFD HHHHHHHHCCHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHH VLNRFRVLCATRTGARGADEVNALVAAEVRRAVRVPLALGAHWFAGRPVMVTRNDYALGL HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCHHHHCCHHHCCCCEEEECCCEEEEE FNGDIGIALPGARGALRVWFRGADGRARAVSPAALPPHDTAFALTVHKSQGSEFDDAALV EECCEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCEEE LPASFNRVLSRELVYTAITRARSRVRVIGARAVLALAIATRTARDSGLAARIADALRTR ECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 3537961; 9278503; 3537960 [H]