Click here to switch to the map view.

The map label for this gene is cmpR [H]

Identifier: 83719863

GI number: 83719863

Start: 2585128

End: 2586033

Strand: Direct

Name: cmpR [H]

Synonym: BTH_I2293

Alternate gene names: 83719863

Gene position: 2585128-2586033 (Clockwise)

Preceding gene: 83718941

Following gene: 83719100

Centisome position: 67.87

GC content: 73.62

Gene sequence:

>906_bases
ATGACCCCAGACCAACTGATAACTTTCGCTGCCGTCGCCGAGCATCGGAACATCAGCCGCGCGGCGCTCGCGCTGCATCT
GTCGCAGCCCGCGGTGTCCGGCCAGCTGCGCCAGCTGCAGGACGAGTTCGGCGAGCCGCTGTACCAGCGCGACGGGCGCG
GCGTGCGCCTCACGCCGGTCGGCGAGGCGCTCGCGCGCCATGCGGCGCAACTGCGCGACACGTTCGCGCAGGCGCGCGCA
TACCGCGACGCGGTGCGCGGGCTCGAGCGCGGCACGCTGCGGATCGGCGCGAGCACGACGCCCGCGAGCTACCTGCTGCC
GTATCTGCTCGCTGCGTTCCAGCCGCTCGCGCCGGACGTCGTGATCCAGACGATGAGTGGCAACACGTCGGACGTCGTCG
CGTCGCTCGCGTCGCTCGACGTCGCGCTGATCGAGGGGCCGGCCGGCGACGCGCTGCCGGCCGGCACGACGGTGCACGAA
TGGCACGAGGACGAGATCGTCGCGATCGTGCCGGCGTCGCATCCGCTCGCCGCCGCGCGCGGCGCGCCGGGCCGTGCGCG
CGCGACGCTCGCCGCGCTCGCCGCATACCCGCTCGTGCTGCGCGAGGCGGGCTCCGGCGTGCGCCAGCTCGTCGAGCGCG
CGTTCGCGCGCGCCGCGACGCCGCTTGCGGTCGCGTTCGAGATCGCGGGCGTCGAGGCGGTGAAGGAGGCGGTGCGCGCG
GGCATGGGCGTCGGTTTCGTGTCCGCGATGTCGCTTCGGCATGACGACGCGGCGCTCGCGATGGTGTCGATCGCCCCCGA
GCCGCTCACGCGCCATTTCTCGATTCTCGTGCCGCACGGCGCGACGCCGTCGCGCGTCACGACGCGCTTTCTCGAGCTGT
GCATCGCGCAGGCCGAATCGGCTTGA

Upstream 100 bases:

>100_bases
CGTTTTCCGGGTGGACGGGCCTAATCCTAAATTGGATATATCGATATGAAAAATCGTAATTAGTGGCGTAATATATCCGG
AAATCCGATATTTTAGACCG

Downstream 100 bases:

>100_bases
CGGGTAGCGCGACGGCGGCGGGCGGACGGGCGTCCGGCTGTTCGCGGACTATCGGCGGCGGCCGTCGCCCGGATGGCCGC
CCGGCGCTTCCGGCGCGATG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 301; Mature: 300

Protein sequence:

>301_residues
MTPDQLITFAAVAEHRNISRAALALHLSQPAVSGQLRQLQDEFGEPLYQRDGRGVRLTPVGEALARHAAQLRDTFAQARA
YRDAVRGLERGTLRIGASTTPASYLLPYLLAAFQPLAPDVVIQTMSGNTSDVVASLASLDVALIEGPAGDALPAGTTVHE
WHEDEIVAIVPASHPLAAARGAPGRARATLAALAAYPLVLREAGSGVRQLVERAFARAATPLAVAFEIAGVEAVKEAVRA
GMGVGFVSAMSLRHDDAALAMVSIAPEPLTRHFSILVPHGATPSRVTTRFLELCIAQAESA

Sequences:

>Translated_301_residues
MTPDQLITFAAVAEHRNISRAALALHLSQPAVSGQLRQLQDEFGEPLYQRDGRGVRLTPVGEALARHAAQLRDTFAQARA
YRDAVRGLERGTLRIGASTTPASYLLPYLLAAFQPLAPDVVIQTMSGNTSDVVASLASLDVALIEGPAGDALPAGTTVHE
WHEDEIVAIVPASHPLAAARGAPGRARATLAALAAYPLVLREAGSGVRQLVERAFARAATPLAVAFEIAGVEAVKEAVRA
GMGVGFVSAMSLRHDDAALAMVSIAPEPLTRHFSILVPHGATPSRVTTRFLELCIAQAESA
>Mature_300_residues
TPDQLITFAAVAEHRNISRAALALHLSQPAVSGQLRQLQDEFGEPLYQRDGRGVRLTPVGEALARHAAQLRDTFAQARAY
RDAVRGLERGTLRIGASTTPASYLLPYLLAAFQPLAPDVVIQTMSGNTSDVVASLASLDVALIEGPAGDALPAGTTVHEW
HEDEIVAIVPASHPLAAARGAPGRARATLAALAAYPLVLREAGSGVRQLVERAFARAATPLAVAFEIAGVEAVKEAVRAG
MGVGFVSAMSLRHDDAALAMVSIAPEPLTRHFSILVPHGATPSRVTTRFLELCIAQAESA

Specific function: Activates transcription of the cmpABCD operon under carbon dioxide-limited conditions. Specifically binds to the cmpR- cmpA intergenic region [H]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788481, Length=306, Percent_Identity=30.718954248366, Blast_Score=113, Evalue=2e-26,
Organism=Escherichia coli, GI157672245, Length=279, Percent_Identity=32.6164874551971, Blast_Score=110, Evalue=9e-26,
Organism=Escherichia coli, GI1787530, Length=270, Percent_Identity=28.5185185185185, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1787879, Length=284, Percent_Identity=29.5774647887324, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1788296, Length=307, Percent_Identity=26.7100977198697, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1790399, Length=280, Percent_Identity=27.8571428571429, Blast_Score=83, Evalue=3e-17,
Organism=Escherichia coli, GI1790208, Length=275, Percent_Identity=28, Blast_Score=78, Evalue=8e-16,
Organism=Escherichia coli, GI1788887, Length=175, Percent_Identity=33.1428571428571, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI87081904, Length=206, Percent_Identity=28.1553398058252, Blast_Score=74, Evalue=8e-15,
Organism=Escherichia coli, GI145693105, Length=248, Percent_Identity=22.1774193548387, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1788748, Length=265, Percent_Identity=28.3018867924528, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1788626, Length=248, Percent_Identity=28.6290322580645, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1787806, Length=177, Percent_Identity=27.683615819209, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1787601, Length=226, Percent_Identity=25.6637168141593, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 31649; Mature: 31517

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPDQLITFAAVAEHRNISRAALALHLSQPAVSGQLRQLQDEFGEPLYQRDGRGVRLTPV
CCHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHCCCCCEEECHH
GEALARHAAQLRDTFAQARAYRDAVRGLERGTLRIGASTTPASYLLPYLLAAFQPLAPDV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHCCCCCHH
VIQTMSGNTSDVVASLASLDVALIEGPAGDALPAGTTVHEWHEDEIVAIVPASHPLAAAR
EEEECCCCHHHHHHHHHHHCEEEEECCCCCCCCCCCCHHHCCCCCEEEEEECCCCHHHHC
GAPGRARATLAALAAYPLVLREAGSGVRQLVERAFARAATPLAVAFEIAGVEAVKEAVRA
CCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
GMGVGFVSAMSLRHDDAALAMVSIAPEPLTRHFSILVPHGATPSRVTTRFLELCIAQAES
CCCHHHHHHHHHCCCCHHEEEEEECCCCHHCCEEEEECCCCCCHHHHHHHHHHHHHHHCC
A
C
>Mature Secondary Structure 
TPDQLITFAAVAEHRNISRAALALHLSQPAVSGQLRQLQDEFGEPLYQRDGRGVRLTPV
CHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHCCCCCEEECHH
GEALARHAAQLRDTFAQARAYRDAVRGLERGTLRIGASTTPASYLLPYLLAAFQPLAPDV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHCCCCCHH
VIQTMSGNTSDVVASLASLDVALIEGPAGDALPAGTTVHEWHEDEIVAIVPASHPLAAAR
EEEECCCCHHHHHHHHHHHCEEEEECCCCCCCCCCCCHHHCCCCCEEEEEECCCCHHHHC
GAPGRARATLAALAAYPLVLREAGSGVRQLVERAFARAATPLAVAFEIAGVEAVKEAVRA
CCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
GMGVGFVSAMSLRHDDAALAMVSIAPEPLTRHFSILVPHGATPSRVTTRFLELCIAQAES
CCCHHHHHHHHHCCCCHHEEEEEECCCCHHCCEEEEECCCCCCHHHHHHHHHHHHHHHCC
A
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]