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The map label for this gene is rsmB [H]

Identifier: 83719791

GI number: 83719791

Start: 161334

End: 163049

Strand: Direct

Name: rsmB [H]

Synonym: BTH_I0132

Alternate gene names: 83719791

Gene position: 161334-163049 (Clockwise)

Preceding gene: 83720265

Following gene: 83720682

Centisome position: 4.24

GC content: 71.91

Gene sequence:

>1716_bases
ATGCATCGCGCTGCGGGGTTCGGCGTTTTGGGTGGGTGGCCGTTTGCTCGATCGAGGCTGCAAAATGCGGCTTGGGGGCG
GCTGCGGACCGTGTCGATACTGCGGCCGAAGCACCGAAGCACCGAAGCACCGAAGCACCGACCGTACCGAACGCGCCGAC
ACATCGCCCGCCCAGCCACCCGAGGCCCGAACCCCCGGCGCGCTACAATATGCCGCTTACCGGCCGACCGGCCGCGGGCC
GGCCACCAAGGCACCTCCTACCACTGCCCGGCGCGAGCGCGCGCCTCAGGCACTGCTGATCCGATGACCCAGACTCGCCC
TTCCCGTTCCCGCGCATCCGGCGCGCCCGCTCGTGCGCCGCGCCAGTCGGCGCTGCATCTCGTCCCCGATTCGCTCGGCT
TCGCGCTCGACGGCGCCGCGCAAGCGGTCGACGCGGTCACTCGCGGCGCGGCGCTGCCCGCTGCGCTTGCGGCCGTCCAC
GCGACGCTGCCTGCGAACGCGCGGGCGGCTTCGCGCGGCGCGATCCAGGATATTGCGTATCGCGCGATGCGTCGTCGCGG
CACGGCCGACTGGCTGATCGCGCAACTCGTCGCGAAGGCGCCGCCCGCGCACGTGCATGCACTTCTCGTCTGCGCGTTCG
CGCTCCTCGTCGACGACGACGAGCACGCCGCCTACGCGCCCTTCACCGTCGTCGATCAGGCGGTGACGGCGATCGGCGCG
CGCCGCGAGTGCTCGTTTGCGAAGGGGCTCGTCAACGCGGTGCTGCGCCGCTTCCTGCGCGAGCGGGCCGTGTGGCTCGA
GCGGTTGCAGTCCGATCGGCGCGCGCGCTGGAACTACGAGCCGTGGTGGATCGACGCGGTCGAGCGTGCGTGGCCCGACG
CATGGCCGCGCATTCTTGCCTCGGGCGACGCGCCCGGCCCGCTCACGCTGCGCGTGAACGCGCGCCGCATGACGGCGGAT
GCGTATCTCGACGTGCTGCGTGCCGAGCGGATCGATGCCGAGAAGGTCGGCCGTCACGCGATACGGCTCGCATCGGCGCT
GCCCGTCGAGCGCATTCCGGGTTTCGCGGACGGCATCGTGTCGGTGCAGGACGCGGGCGCGCAGCTCGCGGCCGAATGGC
TCGGCGCGCGCGACGGCATGCGCGTGCTCGATGCGTGCGCGGCGCCCGGCGGCAAGACGGGCCACATTCTCGAACTCGCG
CACGCCGAGGTCGTCGCGCTCGAAAGCGATCCTGCGCGCGCGCCGCGCATCGGCGAGAACCTCGCGCGGCTGTCGCTCGC
AGCCGACGTGCGCGTCGGCGACGCAGGAGATCCCTCGCAATGGCATGACGGGCGTGCGTTCGACCGGGTCCTCGCCGACG
TGCCGTGCTCCGCGTCGGGTATCGTGCGCCGCCATCCGGACATCCGCTGGCTGCGCCGCGCGGCCGACATTCCCGCGCTC
GTCGCCGAGCAGCGCCGCATCCTGAGCGCGCTCTGGCCGCTCGTGAAACCCGGCGGCGAGTTGCTGTATGCGACCTGCTC
GATCTTTCCGGAAGAGGGCGAGCTGCAGGCGCGCTGGTTTGGAGACGCCTGTCAAGATGCGGTACGATTGGACGCGCCCG
GGCAGTTGTTGCCGCAGGGCGCGACAGGCGGGGCGCCGGCCGCCGGGGGATCGGACGAGCCCGGCCGGCATGTCGATCAC
GACGGATTCTTCTACGCGCGCTTTCAGAAACGGTGA

Upstream 100 bases:

>100_bases
TGACGAGCGCCGTCGAAACGTCGACGCGCTCGTGAGAGGGCGCTGCATCGGCAGCGGTCTTGACATGCGTCGGCGCGTCC
GGTGATCGGCCGAACCCCGC

Downstream 100 bases:

>100_bases
CGATCAAACGCTTCTTTCCACTCCGGCTCGCGGCCGTGCTCTGGGTCGCGCTGACGCTGTGTCTCGCTGCCGTTCCTTCC
GCGCGCGCCGATACGATCGC

Product: sun protein

Products: NA

Alternate protein names: 16S rRNA m5C967 methyltransferase; rRNA (cytosine-C(5)-)-methyltransferase rsmB [H]

Number of amino acids: Translated: 571; Mature: 571

Protein sequence:

>571_residues
MHRAAGFGVLGGWPFARSRLQNAAWGRLRTVSILRPKHRSTEAPKHRPYRTRRHIARPATRGPNPRRATICRLPADRPRA
GHQGTSYHCPARARASGTADPMTQTRPSRSRASGAPARAPRQSALHLVPDSLGFALDGAAQAVDAVTRGAALPAALAAVH
ATLPANARAASRGAIQDIAYRAMRRRGTADWLIAQLVAKAPPAHVHALLVCAFALLVDDDEHAAYAPFTVVDQAVTAIGA
RRECSFAKGLVNAVLRRFLRERAVWLERLQSDRRARWNYEPWWIDAVERAWPDAWPRILASGDAPGPLTLRVNARRMTAD
AYLDVLRAERIDAEKVGRHAIRLASALPVERIPGFADGIVSVQDAGAQLAAEWLGARDGMRVLDACAAPGGKTGHILELA
HAEVVALESDPARAPRIGENLARLSLAADVRVGDAGDPSQWHDGRAFDRVLADVPCSASGIVRRHPDIRWLRRAADIPAL
VAEQRRILSALWPLVKPGGELLYATCSIFPEEGELQARWFGDACQDAVRLDAPGQLLPQGATGGAPAAGGSDEPGRHVDH
DGFFYARFQKR

Sequences:

>Translated_571_residues
MHRAAGFGVLGGWPFARSRLQNAAWGRLRTVSILRPKHRSTEAPKHRPYRTRRHIARPATRGPNPRRATICRLPADRPRA
GHQGTSYHCPARARASGTADPMTQTRPSRSRASGAPARAPRQSALHLVPDSLGFALDGAAQAVDAVTRGAALPAALAAVH
ATLPANARAASRGAIQDIAYRAMRRRGTADWLIAQLVAKAPPAHVHALLVCAFALLVDDDEHAAYAPFTVVDQAVTAIGA
RRECSFAKGLVNAVLRRFLRERAVWLERLQSDRRARWNYEPWWIDAVERAWPDAWPRILASGDAPGPLTLRVNARRMTAD
AYLDVLRAERIDAEKVGRHAIRLASALPVERIPGFADGIVSVQDAGAQLAAEWLGARDGMRVLDACAAPGGKTGHILELA
HAEVVALESDPARAPRIGENLARLSLAADVRVGDAGDPSQWHDGRAFDRVLADVPCSASGIVRRHPDIRWLRRAADIPAL
VAEQRRILSALWPLVKPGGELLYATCSIFPEEGELQARWFGDACQDAVRLDAPGQLLPQGATGGAPAAGGSDEPGRHVDH
DGFFYARFQKR
>Mature_571_residues
MHRAAGFGVLGGWPFARSRLQNAAWGRLRTVSILRPKHRSTEAPKHRPYRTRRHIARPATRGPNPRRATICRLPADRPRA
GHQGTSYHCPARARASGTADPMTQTRPSRSRASGAPARAPRQSALHLVPDSLGFALDGAAQAVDAVTRGAALPAALAAVH
ATLPANARAASRGAIQDIAYRAMRRRGTADWLIAQLVAKAPPAHVHALLVCAFALLVDDDEHAAYAPFTVVDQAVTAIGA
RRECSFAKGLVNAVLRRFLRERAVWLERLQSDRRARWNYEPWWIDAVERAWPDAWPRILASGDAPGPLTLRVNARRMTAD
AYLDVLRAERIDAEKVGRHAIRLASALPVERIPGFADGIVSVQDAGAQLAAEWLGARDGMRVLDACAAPGGKTGHILELA
HAEVVALESDPARAPRIGENLARLSLAADVRVGDAGDPSQWHDGRAFDRVLADVPCSASGIVRRHPDIRWLRRAADIPAL
VAEQRRILSALWPLVKPGGELLYATCSIFPEEGELQARWFGDACQDAVRLDAPGQLLPQGATGGAPAAGGSDEPGRHVDH
DGFFYARFQKR

Specific function: Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA [H]

COG id: COG0144

COG function: function code J; tRNA and rRNA cytosine-C5-methylases

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily. RsmB/NOP family [H]

Homologues:

Organism=Homo sapiens, GI76150625, Length=345, Percent_Identity=28.1159420289855, Blast_Score=105, Evalue=1e-22,
Organism=Homo sapiens, GI76150623, Length=345, Percent_Identity=28.1159420289855, Blast_Score=105, Evalue=1e-22,
Organism=Homo sapiens, GI32698918, Length=191, Percent_Identity=30.8900523560209, Blast_Score=86, Evalue=1e-16,
Organism=Escherichia coli, GI2367212, Length=440, Percent_Identity=36.8181818181818, Blast_Score=267, Evalue=1e-72,
Organism=Escherichia coli, GI87081985, Length=236, Percent_Identity=31.3559322033898, Blast_Score=95, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI17536757, Length=342, Percent_Identity=27.7777777777778, Blast_Score=102, Evalue=4e-22,
Organism=Caenorhabditis elegans, GI25143471, Length=198, Percent_Identity=33.3333333333333, Blast_Score=67, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6319447, Length=272, Percent_Identity=28.6764705882353, Blast_Score=85, Evalue=3e-17,
Organism=Saccharomyces cerevisiae, GI6324268, Length=338, Percent_Identity=25.7396449704142, Blast_Score=85, Evalue=3e-17,
Organism=Drosophila melanogaster, GI22024126, Length=321, Percent_Identity=25.8566978193146, Blast_Score=95, Evalue=1e-19,
Organism=Drosophila melanogaster, GI24668781, Length=238, Percent_Identity=31.5126050420168, Blast_Score=79, Evalue=7e-15,
Organism=Drosophila melanogaster, GI21356513, Length=236, Percent_Identity=30.9322033898305, Blast_Score=78, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001678
- InterPro:   IPR018314
- InterPro:   IPR006027
- InterPro:   IPR004573 [H]

Pfam domain/function: PF01189 Nol1_Nop2_Fmu; PF01029 NusB [H]

EC number: =2.1.1.176 [H]

Molecular weight: Translated: 61885; Mature: 61885

Theoretical pI: Translated: 10.89; Mature: 10.89

Prosite motif: PS01153 NOL1_NOP2_SUN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHRAAGFGVLGGWPFARSRLQNAAWGRLRTVSILRPKHRSTEAPKHRPYRTRRHIARPAT
CCCCCCCCCCCCCHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHCCCC
RGPNPRRATICRLPADRPRAGHQGTSYHCPARARASGTADPMTQTRPSRSRASGAPARAP
CCCCCCCEEEEECCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCC
RQSALHLVPDSLGFALDGAAQAVDAVTRGAALPAALAAVHATLPANARAASRGAIQDIAY
HHHHHEECCHHHCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCHHHCHHHHHHHH
RAMRRRGTADWLIAQLVAKAPPAHVHALLVCAFALLVDDDEHAAYAPFTVVDQAVTAIGA
HHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCC
RRECSFAKGLVNAVLRRFLRERAVWLERLQSDRRARWNYEPWWIDAVERAWPDAWPRILA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCHHHHHHHC
SGDAPGPLTLRVNARRMTADAYLDVLRAERIDAEKVGRHAIRLASALPVERIPGFADGIV
CCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHCCCHHHCHH
SVQDAGAQLAAEWLGARDGMRVLDACAAPGGKTGHILELAHAEVVALESDPARAPRIGEN
HHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCEEEECCCEEEEECCCCCCCCHHHHH
LARLSLAADVRVGDAGDPSQWHDGRAFDRVLADVPCSASGIVRRHPDIRWLRRAADIPAL
HHHHHHHHEEEECCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHCCCCHHHHHHHHCCHHH
VAEQRRILSALWPLVKPGGELLYATCSIFPEEGELQARWFGDACQDAVRLDAPGQLLPQG
HHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCEEEEECCHHHHHHEECCCCCCCCCCC
ATGGAPAAGGSDEPGRHVDHDGFFYARFQKR
CCCCCCCCCCCCCCCCCCCCCCEEEEEEECC
>Mature Secondary Structure
MHRAAGFGVLGGWPFARSRLQNAAWGRLRTVSILRPKHRSTEAPKHRPYRTRRHIARPAT
CCCCCCCCCCCCCHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHCCCC
RGPNPRRATICRLPADRPRAGHQGTSYHCPARARASGTADPMTQTRPSRSRASGAPARAP
CCCCCCCEEEEECCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCC
RQSALHLVPDSLGFALDGAAQAVDAVTRGAALPAALAAVHATLPANARAASRGAIQDIAY
HHHHHEECCHHHCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCHHHCHHHHHHHH
RAMRRRGTADWLIAQLVAKAPPAHVHALLVCAFALLVDDDEHAAYAPFTVVDQAVTAIGA
HHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCC
RRECSFAKGLVNAVLRRFLRERAVWLERLQSDRRARWNYEPWWIDAVERAWPDAWPRILA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCHHHHHHHC
SGDAPGPLTLRVNARRMTADAYLDVLRAERIDAEKVGRHAIRLASALPVERIPGFADGIV
CCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHCCCHHHCHH
SVQDAGAQLAAEWLGARDGMRVLDACAAPGGKTGHILELAHAEVVALESDPARAPRIGEN
HHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCEEEECCCEEEEECCCCCCCCHHHHH
LARLSLAADVRVGDAGDPSQWHDGRAFDRVLADVPCSASGIVRRHPDIRWLRRAADIPAL
HHHHHHHHEEEECCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHCCCCHHHHHHHHCCHHH
VAEQRRILSALWPLVKPGGELLYATCSIFPEEGELQARWFGDACQDAVRLDAPGQLLPQG
HHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCEEEEECCHHHHHHEECCCCCCCCCCC
ATGGAPAAGGSDEPGRHVDHDGFFYARFQKR
CCCCCCCCCCCCCCCCCCCCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA