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The map label for this gene is ybaO [H]

Identifier: 83719729

GI number: 83719729

Start: 3286416

End: 3287012

Strand: Reverse

Name: ybaO [H]

Synonym: BTH_I2859

Alternate gene names: 83719729

Gene position: 3287012-3286416 (Counterclockwise)

Preceding gene: 83720179

Following gene: 83719608

Centisome position: 86.29

GC content: 62.98

Gene sequence:

>597_bases
GTGGCCCGCGGCGACGGTGCGCGGGTCCGGTACGTATTTATACCGGTCGACTTGGAGAAACGGATTCCATATTGTTCCCT
CATGCGAACAATGGATAGAATAATTTTCTATTCGCTGGGGACTGGGGAAATGGACGCGATCGATCGTAAGTTGCTCGAAC
TGCTGCAGGAGGACGCGACGCTGCCGATCGCCGAACTCGCGCAGCGGGTGAATCTGTCGCAGACGCCGTGCTGGAAGCGG
ATTCAGCGGCTCAAGGAGACGGGCGCGATTCGGGCGCAGGTCGCGCTGTGCGATCCGCGCAAGCTCGGCGTGGGGACGAC
GGTGTTCGTCGCCGTGCGCACGAACCAGCATACCGAGGAGTGGGCGGCGCGCTTCACGCAGGTCGTGCGCGACATGCCGG
AAGTCGTCGAGGTCTACCGGATGAGCGGGGAGACGGACTATCTGCTGCGCGTGGTCGTCGCCGACATCGACGACTACGAC
CGCATCTACAAGAAGCTGATTCGCTCGGTGCCGCTCTTCGACGTGAGCTCGTCGTTCGCGATGGAGCAGATCAAGTATTC
GACCGCGCTGCCGGTGCGCGACGGCGGCGCGGGCTGA

Upstream 100 bases:

>100_bases
CGACACAGCGCCGTCGGCGCGCGCTCGCGCGGCCTCGGATGCGTATCCTGCACGTGCGGGACGGGGGAGGCGGCGTGGTC
CATCGTTGACTCGGTCGTTC

Downstream 100 bases:

>100_bases
TCGATCCCGGCGATCCCGGCGATCCCGGCGATTCCGGCGATTCCGGCGATTCCGGCGATTCCGGCGAGCGGCGCATCGGG
TGCCGCACGCCCGACGCATC

Product: AsnC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 198; Mature: 197

Protein sequence:

>198_residues
MARGDGARVRYVFIPVDLEKRIPYCSLMRTMDRIIFYSLGTGEMDAIDRKLLELLQEDATLPIAELAQRVNLSQTPCWKR
IQRLKETGAIRAQVALCDPRKLGVGTTVFVAVRTNQHTEEWAARFTQVVRDMPEVVEVYRMSGETDYLLRVVVADIDDYD
RIYKKLIRSVPLFDVSSSFAMEQIKYSTALPVRDGGAG

Sequences:

>Translated_198_residues
MARGDGARVRYVFIPVDLEKRIPYCSLMRTMDRIIFYSLGTGEMDAIDRKLLELLQEDATLPIAELAQRVNLSQTPCWKR
IQRLKETGAIRAQVALCDPRKLGVGTTVFVAVRTNQHTEEWAARFTQVVRDMPEVVEVYRMSGETDYLLRVVVADIDDYD
RIYKKLIRSVPLFDVSSSFAMEQIKYSTALPVRDGGAG
>Mature_197_residues
ARGDGARVRYVFIPVDLEKRIPYCSLMRTMDRIIFYSLGTGEMDAIDRKLLELLQEDATLPIAELAQRVNLSQTPCWKRI
QRLKETGAIRAQVALCDPRKLGVGTTVFVAVRTNQHTEEWAARFTQVVRDMPEVVEVYRMSGETDYLLRVVVADIDDYDR
IYKKLIRSVPLFDVSSSFAMEQIKYSTALPVRDGGAG

Specific function: Unknown

COG id: COG1522

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081742, Length=150, Percent_Identity=57.3333333333333, Blast_Score=185, Evalue=1e-48,
Organism=Escherichia coli, GI1787116, Length=152, Percent_Identity=32.8947368421053, Blast_Score=94, Evalue=7e-21,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR013196
- InterPro:   IPR000485
- InterPro:   IPR019885
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01037 AsnC_trans_reg; PF08279 HTH_11 [H]

EC number: NA

Molecular weight: Translated: 22538; Mature: 22407

Theoretical pI: Translated: 8.02; Mature: 8.02

Prosite motif: PS00519 HTH_ASNC_1 ; PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARGDGARVRYVFIPVDLEKRIPYCSLMRTMDRIIFYSLGTGEMDAIDRKLLELLQEDAT
CCCCCCCEEEEEEEECCHHHHCCHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHCCC
LPIAELAQRVNLSQTPCWKRIQRLKETGAIRAQVALCDPRKLGVGTTVFVAVRTNQHTEE
CCHHHHHHHCCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCEEEEEEEECCCCHHH
WAARFTQVVRDMPEVVEVYRMSGETDYLLRVVVADIDDYDRIYKKLIRSVPLFDVSSSFA
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHH
MEQIKYSTALPVRDGGAG
HHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
ARGDGARVRYVFIPVDLEKRIPYCSLMRTMDRIIFYSLGTGEMDAIDRKLLELLQEDAT
CCCCCCEEEEEEEECCHHHHCCHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHCCC
LPIAELAQRVNLSQTPCWKRIQRLKETGAIRAQVALCDPRKLGVGTTVFVAVRTNQHTEE
CCHHHHHHHCCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCEEEEEEEECCCCHHH
WAARFTQVVRDMPEVVEVYRMSGETDYLLRVVVADIDDYDRIYKKLIRSVPLFDVSSSFA
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHH
MEQIKYSTALPVRDGGAG
HHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]