Click here to switch to the map view.

The map label for this gene is ygaU [H]

Identifier: 83719633

GI number: 83719633

Start: 2444839

End: 2445309

Strand: Reverse

Name: ygaU [H]

Synonym: BTH_I2167

Alternate gene names: 83719633

Gene position: 2445309-2444839 (Counterclockwise)

Preceding gene: 83718981

Following gene: 83721491

Centisome position: 64.19

GC content: 63.27

Gene sequence:

>471_bases
ATGGGTCTTCTTTCGTTCATCAAGGAAGCGGGTGAAAAGCTGCTCGGCAAGAGCGACCAGCAAGCCGCGACCGATCCGGC
CGCCGCGAACCAGACGGCCGCCGATGCGATCAAGAACTACATCTGCGCACAGGGCCTCGACACGTCGAACCTGACGGTCG
CGTTCGACGGTGCGTCGCGCACCGTCACGCTCACGGGCAGCGTCGCGGATCTCGACACGAAGGCGAAGGTCAAAGTGGCG
GCGGGCAACGTGCAAGGCGTCGCGGGCGTCAATGACGACGACCTGCAGCCGGACGATCCGCAAGTGCAATACCACGACGT
CGTGTCCGGCGACAACCTGTGGAAGATCGCCGAGAAGTACTATGGCGACGGCTCGAAGAACGACGCGATCTTCCAGGCGA
ACCGCCCGATGCTGTCGAGCCCGGACAAGATCTATCCGGGCCAGAAGCTCGTGATTCCGCCGCAGTCCTGA

Upstream 100 bases:

>100_bases
CGCCTACACTTTCGCGACGCCTTTCGGGAAGCGCGCGCATCGCTCGCGCTACCCGCAACTTCACGGCGCATTTTTGTCAA
TCACCTGAAGGAGTGTTGCG

Downstream 100 bases:

>100_bases
ACGACGCGCGCGCAGCGGGCAGCATGAAAAAAGCGGACTTGCGGGTCCGCTTTTTTCATGCGCGTCGCGATTGCCTCCGA
TTCGATCCGACGCGGCTCGA

Product: LysM domain/BON superfamily protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 156; Mature: 155

Protein sequence:

>156_residues
MGLLSFIKEAGEKLLGKSDQQAATDPAAANQTAADAIKNYICAQGLDTSNLTVAFDGASRTVTLTGSVADLDTKAKVKVA
AGNVQGVAGVNDDDLQPDDPQVQYHDVVSGDNLWKIAEKYYGDGSKNDAIFQANRPMLSSPDKIYPGQKLVIPPQS

Sequences:

>Translated_156_residues
MGLLSFIKEAGEKLLGKSDQQAATDPAAANQTAADAIKNYICAQGLDTSNLTVAFDGASRTVTLTGSVADLDTKAKVKVA
AGNVQGVAGVNDDDLQPDDPQVQYHDVVSGDNLWKIAEKYYGDGSKNDAIFQANRPMLSSPDKIYPGQKLVIPPQS
>Mature_155_residues
GLLSFIKEAGEKLLGKSDQQAATDPAAANQTAADAIKNYICAQGLDTSNLTVAFDGASRTVTLTGSVADLDTKAKVKVAA
GNVQGVAGVNDDDLQPDDPQVQYHDVVSGDNLWKIAEKYYGDGSKNDAIFQANRPMLSSPDKIYPGQKLVIPPQS

Specific function: Unknown

COG id: COG1652

COG function: function code S; Uncharacterized protein containing LysM domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI1789019, Length=160, Percent_Identity=38.75, Blast_Score=94, Evalue=4e-21,

Paralogues:

None

Copy number: 4340 Molecules/Cell In: Early Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018392
- InterPro:   IPR002482
- InterPro:   IPR007055
- InterPro:   IPR014004 [H]

Pfam domain/function: PF04972 BON; PF01476 LysM [H]

EC number: NA

Molecular weight: Translated: 16440; Mature: 16309

Theoretical pI: Translated: 4.42; Mature: 4.42

Prosite motif: PS50914 BON

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGLLSFIKEAGEKLLGKSDQQAATDPAAANQTAADAIKNYICAQGLDTSNLTVAFDGASR
CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCE
TVTLTGSVADLDTKAKVKVAAGNVQGVAGVNDDDLQPDDPQVQYHDVVSGDNLWKIAEKY
EEEEECCCCCCCCCCEEEEECCCCCEECCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHH
YGDGSKNDAIFQANRPMLSSPDKIYPGQKLVIPPQS
CCCCCCCCEEEECCCCCCCCCCCCCCCCEEEECCCC
>Mature Secondary Structure 
GLLSFIKEAGEKLLGKSDQQAATDPAAANQTAADAIKNYICAQGLDTSNLTVAFDGASR
CHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCE
TVTLTGSVADLDTKAKVKVAAGNVQGVAGVNDDDLQPDDPQVQYHDVVSGDNLWKIAEKY
EEEEECCCCCCCCCCEEEEECCCCCEECCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHH
YGDGSKNDAIFQANRPMLSSPDKIYPGQKLVIPPQS
CCCCCCCCEEEECCCCCCCCCCCCCCCCEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]