| Definition | Burkholderia thailandensis E264 chromosome chromosome I, complete sequence. |
|---|---|
| Accession | NC_007651 |
| Length | 3,809,201 |
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The map label for this gene is ilvD [H]
Identifier: 83719513
GI number: 83719513
Start: 940859
End: 942532
Strand: Reverse
Name: ilvD [H]
Synonym: BTH_I0827
Alternate gene names: 83719513
Gene position: 942532-940859 (Counterclockwise)
Preceding gene: 83719017
Following gene: 83719532
Centisome position: 24.74
GC content: 67.03
Gene sequence:
>1674_bases ATGTCGTACAACCGCCGCTCGAAGAACATCACGCAAGGCGTGGCCCGTTCGCCGAACCGCTCGATGTATTACGCGCTCGG CTATCAGAAGGACGATTTCGACAAACCGATGATCGGCGTCGCGAACGGCCACTCGACGATCACGCCGTGCAACGCGGGCC TGCAGCGCCTCGTCGACGCGGCCGTTTCCGCGGTCAAGCAGGCGGACGCGAATCCGCAGACGTTCGGCACGCCGACGATC TCCGACGGCATGTCGATGGGCACCGAAGGGATGAAGTACTCGCTCGTGTCGCGCGAGGTGATCGCCGATTGCATCGAGAC CTGCGTGCAGGGCCAATGGATGGACGGCGTCGTCGTCGTGGGCGGCTGCGACAAGAACATGCCGGGCGGCATGATCGCGC TCGCGCGCATCAACGTGCCGGGCATCTACGTGTACGGCGGCACGATTCGCCCGGGTCACTGGAAAGGCAAGGATCTGACG ATCGTGTCGGCGTTCGAGGCGGTCGGCGAGTTCACCGCGGGGCGCATGTCGCAGGAGGATTTCGAAGGGGTCGAAAAGAA CGCGTGCCCGACGACGGGCTCATGCGGCGGCATGTACACCGCGAACACGATGAGCTCGTCGTTCGAGGCGCTCGGCATGT CGCTGCTGTACTCGTCGACGATGGCCAATCCCGATCAGGAGAAGGTCGATTCGGCGGCCGAGTCGGCGCGCGTGCTCGTG GAGGCGGTGAAGAAGGATCTGAAGCCGCGCGACATCATCACGAAGCAGGCAATCGAGAACGCGGTGTCGGTGATCATGGC CACGGGCGGCTCGACGAACGCGGTGCTCCACTATCTGGCGATCGCGCACGCGGCCGAGATCGACTGGTCGATCGAAGACT TCGAGCGCATCCGCAAACGCGTGCCGGTGATCTGCGACCTGAAACCCTCGGGCCAGTACGTCGCCACCGACCTGCACGCG GCGGGCGGCATTCCGCAAGTGATGAAGCTGCTGCTCGACGCGGGCCTGCTGCACGGCGATTGCATGACGATCACGGGCCG CACGATCGCCGAGGAGCTGAAGGACGTGCCGAGCGTGCCGCGCGCCGACCAGAAGGTGATCTACCCGATCGACCAGGCGC TGTACAAGGAAGGCCACCTCGCGATCCTGAAGGGCAACCTCGCCGAGGACGGCGCGGTCGCGAAGATCACCGGCCTGAAG AACCCGGTCATCACCGGCCCGGCGCGCGTGTTCGACGACGAGCAGAGCGCGCTCGCCGCGATCCTCGACGACAAGATCCG TGCGGGCGACGTCGTCGTGCTGCGCTACCTCGGCCCGCAGGGCGGCCCGGGTATGCCGGAGATGCTCGCACCGACGTCGG CGATCATCGGCAAGGGCCTCGGCGAATCGGTCGGCCTCATCACGGACGGCCGCTTCTCGGGCGGCACGTGGGGGATGGTG GTCGGCCACGTCGCGCCGGAAGCGTTCGTCGGCGGCACGATCGCGCTCGTGCAGGAAGGCGATTCAATCACGATCGACGC GCACAAGCTGCTGCTGCAGCTGAACGTCGACGACGCCGAGCTGGCGCGCCGCCGCGCCGCGTGGAAGCAGCCGGCGCCGC GCTACACGCGCGGGGTGCTCGCGAAATATGCGGCGCTCGCCCGCCCGGCGAACAAGGGCGCGGTGACGGGCTGA
Upstream 100 bases:
>100_bases TTCTCTAACAGAAACTGCATTCTTGCCCACCTGAGCCGGATCGCGCCGATGCAGCGCGCCGCGCCGCCCCACAGTCAACC AGTCGATGATGGAGTCCCCC
Downstream 100 bases:
>100_bases CGCACGGCAGCGCGCCGGCCCCGAAGCCGGCGCGCGCTGCGTGCGCGCATCGCAACGCGACGGCGGCGCCACGATGGCGC CACGGCGGGACGACAAAAAG
Product: dihydroxy-acid dehydratase
Products: NA
Alternate protein names: DAD 2 [H]
Number of amino acids: Translated: 557; Mature: 556
Protein sequence:
>557_residues MSYNRRSKNITQGVARSPNRSMYYALGYQKDDFDKPMIGVANGHSTITPCNAGLQRLVDAAVSAVKQADANPQTFGTPTI SDGMSMGTEGMKYSLVSREVIADCIETCVQGQWMDGVVVVGGCDKNMPGGMIALARINVPGIYVYGGTIRPGHWKGKDLT IVSAFEAVGEFTAGRMSQEDFEGVEKNACPTTGSCGGMYTANTMSSSFEALGMSLLYSSTMANPDQEKVDSAAESARVLV EAVKKDLKPRDIITKQAIENAVSVIMATGGSTNAVLHYLAIAHAAEIDWSIEDFERIRKRVPVICDLKPSGQYVATDLHA AGGIPQVMKLLLDAGLLHGDCMTITGRTIAEELKDVPSVPRADQKVIYPIDQALYKEGHLAILKGNLAEDGAVAKITGLK NPVITGPARVFDDEQSALAAILDDKIRAGDVVVLRYLGPQGGPGMPEMLAPTSAIIGKGLGESVGLITDGRFSGGTWGMV VGHVAPEAFVGGTIALVQEGDSITIDAHKLLLQLNVDDAELARRRAAWKQPAPRYTRGVLAKYAALARPANKGAVTG
Sequences:
>Translated_557_residues MSYNRRSKNITQGVARSPNRSMYYALGYQKDDFDKPMIGVANGHSTITPCNAGLQRLVDAAVSAVKQADANPQTFGTPTI SDGMSMGTEGMKYSLVSREVIADCIETCVQGQWMDGVVVVGGCDKNMPGGMIALARINVPGIYVYGGTIRPGHWKGKDLT IVSAFEAVGEFTAGRMSQEDFEGVEKNACPTTGSCGGMYTANTMSSSFEALGMSLLYSSTMANPDQEKVDSAAESARVLV EAVKKDLKPRDIITKQAIENAVSVIMATGGSTNAVLHYLAIAHAAEIDWSIEDFERIRKRVPVICDLKPSGQYVATDLHA AGGIPQVMKLLLDAGLLHGDCMTITGRTIAEELKDVPSVPRADQKVIYPIDQALYKEGHLAILKGNLAEDGAVAKITGLK NPVITGPARVFDDEQSALAAILDDKIRAGDVVVLRYLGPQGGPGMPEMLAPTSAIIGKGLGESVGLITDGRFSGGTWGMV VGHVAPEAFVGGTIALVQEGDSITIDAHKLLLQLNVDDAELARRRAAWKQPAPRYTRGVLAKYAALARPANKGAVTG >Mature_556_residues SYNRRSKNITQGVARSPNRSMYYALGYQKDDFDKPMIGVANGHSTITPCNAGLQRLVDAAVSAVKQADANPQTFGTPTIS DGMSMGTEGMKYSLVSREVIADCIETCVQGQWMDGVVVVGGCDKNMPGGMIALARINVPGIYVYGGTIRPGHWKGKDLTI VSAFEAVGEFTAGRMSQEDFEGVEKNACPTTGSCGGMYTANTMSSSFEALGMSLLYSSTMANPDQEKVDSAAESARVLVE AVKKDLKPRDIITKQAIENAVSVIMATGGSTNAVLHYLAIAHAAEIDWSIEDFERIRKRVPVICDLKPSGQYVATDLHAA GGIPQVMKLLLDAGLLHGDCMTITGRTIAEELKDVPSVPRADQKVIYPIDQALYKEGHLAILKGNLAEDGAVAKITGLKN PVITGPARVFDDEQSALAAILDDKIRAGDVVVLRYLGPQGGPGMPEMLAPTSAIIGKGLGESVGLITDGRFSGGTWGMVV GHVAPEAFVGGTIALVQEGDSITIDAHKLLLQLNVDDAELARRRAAWKQPAPRYTRGVLAKYAALARPANKGAVTG
Specific function: Valine and isoleucine biosynthesis; fourth step. [C]
COG id: COG0129
COG function: function code EG; Dihydroxyacid dehydratase/phosphogluconate dehydratase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ilvD/edd family [H]
Homologues:
Organism=Escherichia coli, GI48994964, Length=604, Percent_Identity=37.5827814569536, Blast_Score=374, Evalue=1e-105, Organism=Escherichia coli, GI2367371, Length=544, Percent_Identity=32.9044117647059, Blast_Score=204, Evalue=1e-53, Organism=Escherichia coli, GI1786464, Length=469, Percent_Identity=35.181236673774, Blast_Score=200, Evalue=2e-52, Organism=Escherichia coli, GI1788157, Length=482, Percent_Identity=31.3278008298755, Blast_Score=192, Evalue=6e-50, Organism=Saccharomyces cerevisiae, GI6322476, Length=560, Percent_Identity=46.25, Blast_Score=508, Evalue=1e-144,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015928 - InterPro: IPR004404 - InterPro: IPR000581 - InterPro: IPR020558 [H]
Pfam domain/function: PF00920 ILVD_EDD [H]
EC number: =4.2.1.9 [H]
Molecular weight: Translated: 59055; Mature: 58924
Theoretical pI: Translated: 6.26; Mature: 6.26
Prosite motif: PS00886 ILVD_EDD_1 ; PS00887 ILVD_EDD_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 5.0 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 4.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSYNRRSKNITQGVARSPNRSMYYALGYQKDDFDKPMIGVANGHSTITPCNAGLQRLVDA CCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHH AVSAVKQADANPQTFGTPTISDGMSMGTEGMKYSLVSREVIADCIETCVQGQWMDGVVVV HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHCCCCCCCEEEE GGCDKNMPGGMIALARINVPGIYVYGGTIRPGHWKGKDLTIVSAFEAVGEFTAGRMSQED ECCCCCCCCCEEEEEEECCCEEEEECCEECCCCCCCCCEEEEHHHHHHHHHHHCCCCHHH FEGVEKNACPTTGSCGGMYTANTMSSSFEALGMSLLYSSTMANPDQEKVDSAAESARVLV HHCCCCCCCCCCCCCCCCEECHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH EAVKKDLKPRDIITKQAIENAVSVIMATGGSTNAVLHYLAIAHAAEIDWSIEDFERIRKR HHHHHCCCCHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHH VPVICDLKPSGQYVATDLHAAGGIPQVMKLLLDAGLLHGDCMTITGRTIAEELKDVPSVP CCEEEECCCCCCEEEEEHHHCCCHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHCCCCC RADQKVIYPIDQALYKEGHLAILKGNLAEDGAVAKITGLKNPVITGPARVFDDEQSALAA CCCCEEEEEHHHHHHCCCCEEEEECCCCCCCCEEEEECCCCCCEECCHHHCCCHHHHHHH ILDDKIRAGDVVVLRYLGPQGGPGMPEMLAPTSAIIGKGLGESVGLITDGRFSGGTWGMV HHHCCCCCCCEEEEEEECCCCCCCCCHHHCCHHHHHHCCCCCCCCEEECCCCCCCCHHHE VGHVAPEAFVGGTIALVQEGDSITIDAHKLLLQLNVDDAELARRRAAWKQPAPRYTRGVL EECCCCHHHCCCEEEEEECCCEEEEEEEEEEEEECCCHHHHHHHHHHHCCCCCHHHHHHH AKYAALARPANKGAVTG HHHHHHHCCCCCCCCCC >Mature Secondary Structure SYNRRSKNITQGVARSPNRSMYYALGYQKDDFDKPMIGVANGHSTITPCNAGLQRLVDA CCCCCCCHHHHHHHCCCCCCEEEEECCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHH AVSAVKQADANPQTFGTPTISDGMSMGTEGMKYSLVSREVIADCIETCVQGQWMDGVVVV HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHCCCCCCCEEEE GGCDKNMPGGMIALARINVPGIYVYGGTIRPGHWKGKDLTIVSAFEAVGEFTAGRMSQED ECCCCCCCCCEEEEEEECCCEEEEECCEECCCCCCCCCEEEEHHHHHHHHHHHCCCCHHH FEGVEKNACPTTGSCGGMYTANTMSSSFEALGMSLLYSSTMANPDQEKVDSAAESARVLV HHCCCCCCCCCCCCCCCCEECHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH EAVKKDLKPRDIITKQAIENAVSVIMATGGSTNAVLHYLAIAHAAEIDWSIEDFERIRKR HHHHHCCCCHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHH VPVICDLKPSGQYVATDLHAAGGIPQVMKLLLDAGLLHGDCMTITGRTIAEELKDVPSVP CCEEEECCCCCCEEEEEHHHCCCHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHCCCCC RADQKVIYPIDQALYKEGHLAILKGNLAEDGAVAKITGLKNPVITGPARVFDDEQSALAA CCCCEEEEEHHHHHHCCCCEEEEECCCCCCCCEEEEECCCCCCEECCHHHCCCHHHHHHH ILDDKIRAGDVVVLRYLGPQGGPGMPEMLAPTSAIIGKGLGESVGLITDGRFSGGTWGMV HHHCCCCCCCEEEEEEECCCCCCCCCHHHCCHHHHHHCCCCCCCCEEECCCCCCCCHHHE VGHVAPEAFVGGTIALVQEGDSITIDAHKLLLQLNVDDAELARRRAAWKQPAPRYTRGVL EECCCCHHHCCCEEEEEECCCEEEEEEEEEEEEECCCHHHHHHHHHHHCCCCCHHHHHHH AKYAALARPANKGAVTG HHHHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA