Click here to switch to the map view.

The map label for this gene is nahR [H]

Identifier: 83719511

GI number: 83719511

Start: 1012006

End: 1012986

Strand: Reverse

Name: nahR [H]

Synonym: BTH_I0885

Alternate gene names: 83719511

Gene position: 1012986-1012006 (Counterclockwise)

Preceding gene: 83718977

Following gene: 83720409

Centisome position: 26.59

GC content: 67.89

Gene sequence:

>981_bases
ATGCACGAAGTGCATTTTCTTCATCATCGGTTGAACATCATGCACCCCTTGTTGCGCCGCCTCGATCTGAATCTGCTGCT
CGTCTTCGACGCACTCTTTCGCCGCCGCTCGGTCACGGCCGCGGCGAACGAGCTCGCGCTCAGCCCGTCCGCGCTGAGCC
ATGCGCTCGCACGGCTGCGCGATGCGCTCGGCGACGAGCTGTTCGTGCGCTTCGGCAACGAGATGCAACCGACCGTGCGC
GCGGAAGACATGGCGGGCTGGGTCGGCGAGGCGCTCGACGTGCTGTCCAAAGGCATGCAGCGCGCGCACCGCTTCGAGCC
GCAGCGCAGCACGCGCACGTTCGTGTTCGCCGCGACCGACTACACCGCGTTCGCGGTGCTGCCCGCGTTCATCTCGACGA
TGCAGCGCGTCGCCCCGCAATTGCGCTTTCGCATCGTCTATTCGGGCCGCAAGATCGCGACCGAGGATCTCGCGGCCGGC
CGGATCGACTTCGCGCTCGGCTATCACGAGGAAACGGGCGTGGTCGCGCCCGGCATCGAAAGCTTCGACTGGTTCACCGA
CGACTACGTCGTGATCGCGAGCGAGCGCCATCCGTCGGTCCGGCGGCGCCTGAGCCTCGCGCAGTATCTGGCGGCGCGAC
ACGTCGTCGTCACGCCGTGGAACGAGACGCGCGGCGTGATCGATCACGTGCTCGACCGGCTCGGCCTCGAGCGGCAAGTC
GCCGTGCAGTTGCCGACCGTGCTCGCGGCGCCCTTCATCGTCGCCGATTCGGAATTGCTGATGACGGTGCCGCGCCATGC
GGCGGAGGTGCTGCAGCACGCGGCGCCGATCCGGCTCTTCGCCGCGCCGTTCGAGATCCCGCGTTACACGGTGAAGGTGT
ATTCGCACGCGAAGCACGCGCGCACCGACGCGCATCGCTGGATTCGCACGCAATTGTTCGACGCCGCGCCTGACACGCCG
CCCGCGCGCGGTGCGCGCTGA

Upstream 100 bases:

>100_bases
GATATCCATGTGGCGGCCCTCCAGGCCTGATCGTGATGAAACGGCGCACCGCGCATGACGCTGGCGCGATCGAAAACGTC
ATGCTACGTTCGAAGCGATC

Downstream 100 bases:

>100_bases
CACGGCAGACCGAGCCGCGCTTGCCCGATTCCCCGCGGTCATGCCATCGCGCCATCACACCGCCCGGCACACTGTCGCCC
GCCTTGCGCCGGGTTGCGAA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 326; Mature: 326

Protein sequence:

>326_residues
MHEVHFLHHRLNIMHPLLRRLDLNLLLVFDALFRRRSVTAAANELALSPSALSHALARLRDALGDELFVRFGNEMQPTVR
AEDMAGWVGEALDVLSKGMQRAHRFEPQRSTRTFVFAATDYTAFAVLPAFISTMQRVAPQLRFRIVYSGRKIATEDLAAG
RIDFALGYHEETGVVAPGIESFDWFTDDYVVIASERHPSVRRRLSLAQYLAARHVVVTPWNETRGVIDHVLDRLGLERQV
AVQLPTVLAAPFIVADSELLMTVPRHAAEVLQHAAPIRLFAAPFEIPRYTVKVYSHAKHARTDAHRWIRTQLFDAAPDTP
PARGAR

Sequences:

>Translated_326_residues
MHEVHFLHHRLNIMHPLLRRLDLNLLLVFDALFRRRSVTAAANELALSPSALSHALARLRDALGDELFVRFGNEMQPTVR
AEDMAGWVGEALDVLSKGMQRAHRFEPQRSTRTFVFAATDYTAFAVLPAFISTMQRVAPQLRFRIVYSGRKIATEDLAAG
RIDFALGYHEETGVVAPGIESFDWFTDDYVVIASERHPSVRRRLSLAQYLAARHVVVTPWNETRGVIDHVLDRLGLERQV
AVQLPTVLAAPFIVADSELLMTVPRHAAEVLQHAAPIRLFAAPFEIPRYTVKVYSHAKHARTDAHRWIRTQLFDAAPDTP
PARGAR
>Mature_326_residues
MHEVHFLHHRLNIMHPLLRRLDLNLLLVFDALFRRRSVTAAANELALSPSALSHALARLRDALGDELFVRFGNEMQPTVR
AEDMAGWVGEALDVLSKGMQRAHRFEPQRSTRTFVFAATDYTAFAVLPAFISTMQRVAPQLRFRIVYSGRKIATEDLAAG
RIDFALGYHEETGVVAPGIESFDWFTDDYVVIASERHPSVRRRLSLAQYLAARHVVVTPWNETRGVIDHVLDRLGLERQV
AVQLPTVLAAPFIVADSELLMTVPRHAAEVLQHAAPIRLFAAPFEIPRYTVKVYSHAKHARTDAHRWIRTQLFDAAPDTP
PARGAR

Specific function: Regulates the expression of the naphthalene (nahA-F) and salicylate (nahG-M) metabolism genes [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081684, Length=306, Percent_Identity=27.1241830065359, Blast_Score=117, Evalue=7e-28,
Organism=Escherichia coli, GI87081766, Length=266, Percent_Identity=24.0601503759398, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1790147, Length=266, Percent_Identity=25.9398496240602, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1786820, Length=248, Percent_Identity=21.7741935483871, Blast_Score=68, Evalue=7e-13,

Paralogues:

None

Copy number: 825 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 36799; Mature: 36799

Theoretical pI: Translated: 9.86; Mature: 9.86

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHEVHFLHHRLNIMHPLLRRLDLNLLLVFDALFRRRSVTAAANELALSPSALSHALARLR
CCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
DALGDELFVRFGNEMQPTVRAEDMAGWVGEALDVLSKGMQRAHRFEPQRSTRTFVFAATD
HHHCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECC
YTAFAVLPAFISTMQRVAPQLRFRIVYSGRKIATEDLAAGRIDFALGYHEETGVVAPGIE
HHHHHHHHHHHHHHHHHHHHHEEEEEECCCEECHHHHHCCCEEEEECCCCCCCCCCCCCC
SFDWFTDDYVVIASERHPSVRRRLSLAQYLAARHVVVTPWNETRGVIDHVLDRLGLERQV
CCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCEEEECCHHHHHHHHHHHHHHCCCHHH
AVQLPTVLAAPFIVADSELLMTVPRHAAEVLQHAAPIRLFAAPFEIPRYTVKVYSHAKHA
HHHHHHHHHCCHHEECCHHHHHCCHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHH
RTDAHRWIRTQLFDAAPDTPPARGAR
HHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MHEVHFLHHRLNIMHPLLRRLDLNLLLVFDALFRRRSVTAAANELALSPSALSHALARLR
CCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
DALGDELFVRFGNEMQPTVRAEDMAGWVGEALDVLSKGMQRAHRFEPQRSTRTFVFAATD
HHHCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECC
YTAFAVLPAFISTMQRVAPQLRFRIVYSGRKIATEDLAAGRIDFALGYHEETGVVAPGIE
HHHHHHHHHHHHHHHHHHHHHEEEEEECCCEECHHHHHCCCEEEEECCCCCCCCCCCCCC
SFDWFTDDYVVIASERHPSVRRRLSLAQYLAARHVVVTPWNETRGVIDHVLDRLGLERQV
CCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCEEEECCHHHHHHHHHHHHHHCCCHHH
AVQLPTVLAAPFIVADSELLMTVPRHAAEVLQHAAPIRLFAAPFEIPRYTVKVYSHAKHA
HHHHHHHHHCCHHEECCHHHHHCCHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHH
RTDAHRWIRTQLFDAAPDTPPARGAR
HHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2703465; 2848005 [H]