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The map label for this gene is yafC [H]

Identifier: 83719310

GI number: 83719310

Start: 913217

End: 914179

Strand: Reverse

Name: yafC [H]

Synonym: BTH_I0799

Alternate gene names: 83719310

Gene position: 914179-913217 (Counterclockwise)

Preceding gene: 83721499

Following gene: 83718868

Centisome position: 24.0

GC content: 68.54

Gene sequence:

>963_bases
ATGCGCGAGGTCAATCGTTTCTCCGAGATGGCCGTATTCGTTCAGGTGATCGAGTCGTGCGGATTCTCCGCGGCGGGACG
GCGGCTCGACATGACGCCGTCGGCGATCAGCAAGTTCGTTCAACGGCTCGAGACGCGGCTTGGCGTGCGCCTGTTGAATC
GCACGACGCGCAAGCTGCAGCTCACGCCCGAAGGCGCCGCGTTCTACGAACGCTGCGTGCGCATCCTCGAAGACATCGCC
GACGCCGAACGCGAAGCGACGCATGGCGCGATTCCGCAAGGACGCGTGCGGATCAATTCGCACGTGCCGTTCGGCAAGCA
TCATCTGATGCCGCTCGTGCCCGAGTTCCAGCGCCGCTACCCGGACATCACGCTCGACATCGTGCTGTCGGACGCGGCCG
CCGGCCCGCTCGACGACCGCAGCGACATCGCGATCCGCTCCGGCTCGCTCGACGATTCGCGGCTCGTGATGCGCCGGCTC
GGCGGCAGCCGGATGATCGTCGTCGGCTCGCCCGCGTATCTCGAGCTCAACGGCATGCCGGCGACGCCCGACGATCTCGA
TCGCCACAACTGCATCGGCCTGAGCGGCAACGCGAAGGCATGGCCGTTCGCCGCGACGGAAGGCCAGCGCCTGCTGCAGT
GGGGCGGCAACCTGCTGCTCGGCGACAACGAAAGCATCCGCGAAGCCGCCGTCTCCGGGCTCGGGCTCGCGCGGCTCGCG
CGCTTTCACGTCGACGCGGACCTCGACGCGGGGCGCCTCGTGCCGGTGCTCGAAGCATTCAATCCGGGCGACGAGGAGGA
GATCAACGCGGTGTTCGTCGGGCCGAGCGAACACCTGCCGATGCGCGTGCATGCGCTACTCGAGTTCCTGAAGGAGCGGA
TACGGATCGGGCCGCGCGCCGCCGGCGATCGCAGCGACGCGCCGATGCTCGGCGCACGCGCCGTCGTCACGCGGCTGCGC
TGA

Upstream 100 bases:

>100_bases
ATGAAAATCGACGAGCACGGGAATAAGAAAATCCCGCGAGTTCGAAAACAAGCCGCGGATATACTAGGATTCATCCATTC
AAAATCTCGTCCAAACGTCC

Downstream 100 bases:

>100_bases
ACGCGTCGCCGCCGATGCGCTCCGGCGTGTCGTCGCGCGGATGAACGTGCGTGCGCATGCGCACGCGATGCGCACCCAAA
GCGCCGATCGCGCCAACCCG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 320; Mature: 320

Protein sequence:

>320_residues
MREVNRFSEMAVFVQVIESCGFSAAGRRLDMTPSAISKFVQRLETRLGVRLLNRTTRKLQLTPEGAAFYERCVRILEDIA
DAEREATHGAIPQGRVRINSHVPFGKHHLMPLVPEFQRRYPDITLDIVLSDAAAGPLDDRSDIAIRSGSLDDSRLVMRRL
GGSRMIVVGSPAYLELNGMPATPDDLDRHNCIGLSGNAKAWPFAATEGQRLLQWGGNLLLGDNESIREAAVSGLGLARLA
RFHVDADLDAGRLVPVLEAFNPGDEEEINAVFVGPSEHLPMRVHALLEFLKERIRIGPRAAGDRSDAPMLGARAVVTRLR

Sequences:

>Translated_320_residues
MREVNRFSEMAVFVQVIESCGFSAAGRRLDMTPSAISKFVQRLETRLGVRLLNRTTRKLQLTPEGAAFYERCVRILEDIA
DAEREATHGAIPQGRVRINSHVPFGKHHLMPLVPEFQRRYPDITLDIVLSDAAAGPLDDRSDIAIRSGSLDDSRLVMRRL
GGSRMIVVGSPAYLELNGMPATPDDLDRHNCIGLSGNAKAWPFAATEGQRLLQWGGNLLLGDNESIREAAVSGLGLARLA
RFHVDADLDAGRLVPVLEAFNPGDEEEINAVFVGPSEHLPMRVHALLEFLKERIRIGPRAAGDRSDAPMLGARAVVTRLR
>Mature_320_residues
MREVNRFSEMAVFVQVIESCGFSAAGRRLDMTPSAISKFVQRLETRLGVRLLNRTTRKLQLTPEGAAFYERCVRILEDIA
DAEREATHGAIPQGRVRINSHVPFGKHHLMPLVPEFQRRYPDITLDIVLSDAAAGPLDDRSDIAIRSGSLDDSRLVMRRL
GGSRMIVVGSPAYLELNGMPATPDDLDRHNCIGLSGNAKAWPFAATEGQRLLQWGGNLLLGDNESIREAAVSGLGLARLA
RFHVDADLDAGRLVPVLEAFNPGDEEEINAVFVGPSEHLPMRVHALLEFLKERIRIGPRAAGDRSDAPMLGARAVVTRLR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786401, Length=296, Percent_Identity=36.4864864864865, Blast_Score=190, Evalue=1e-49,
Organism=Escherichia coli, GI145693193, Length=293, Percent_Identity=30.3754266211604, Blast_Score=135, Evalue=3e-33,
Organism=Escherichia coli, GI1789639, Length=293, Percent_Identity=30.3754266211604, Blast_Score=133, Evalue=2e-32,
Organism=Escherichia coli, GI1787128, Length=292, Percent_Identity=29.4520547945205, Blast_Score=120, Evalue=9e-29,
Organism=Escherichia coli, GI1789440, Length=287, Percent_Identity=27.1777003484321, Blast_Score=115, Evalue=3e-27,
Organism=Escherichia coli, GI1787589, Length=262, Percent_Identity=30.9160305343511, Blast_Score=109, Evalue=2e-25,
Organism=Escherichia coli, GI87081978, Length=297, Percent_Identity=26.9360269360269, Blast_Score=109, Evalue=3e-25,
Organism=Escherichia coli, GI1789173, Length=243, Percent_Identity=25.5144032921811, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1790011, Length=311, Percent_Identity=26.0450160771704, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI87082132, Length=254, Percent_Identity=25.9842519685039, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1788481, Length=257, Percent_Identity=23.7354085603113, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1788706, Length=185, Percent_Identity=25.9459459459459, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1788748, Length=126, Percent_Identity=36.5079365079365, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI87082024, Length=244, Percent_Identity=25.8196721311475, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 35225; Mature: 35225

Theoretical pI: Translated: 7.26; Mature: 7.26

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MREVNRFSEMAVFVQVIESCGFSAAGRRLDMTPSAISKFVQRLETRLGVRLLNRTTRKLQ
CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEE
LTPEGAAFYERCVRILEDIADAEREATHGAIPQGRVRINSHVPFGKHHLMPLVPEFQRRY
ECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCCHHHHHHC
PDITLDIVLSDAAAGPLDDRSDIAIRSGSLDDSRLVMRRLGGSRMIVVGSPAYLELNGMP
CCEEEEEEEECCCCCCCCCCCCEEEECCCCCHHHHHHHHCCCCEEEEEECCCEEEECCCC
ATPDDLDRHNCIGLSGNAKAWPFAATEGQRLLQWGGNLLLGDNESIREAAVSGLGLARLA
CCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHCCCEEECCCHHHHHHHHHHHHHHHHH
RFHVDADLDAGRLVPVLEAFNPGDEEEINAVFVGPSEHLPMRVHALLEFLKERIRIGPRA
HHHCCCCCCCCCHHHHHHHCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHCCCCC
AGDRSDAPMLGARAVVTRLR
CCCCCCCCHHHHHHHHHHCC
>Mature Secondary Structure
MREVNRFSEMAVFVQVIESCGFSAAGRRLDMTPSAISKFVQRLETRLGVRLLNRTTRKLQ
CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEE
LTPEGAAFYERCVRILEDIADAEREATHGAIPQGRVRINSHVPFGKHHLMPLVPEFQRRY
ECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCCHHHHHHC
PDITLDIVLSDAAAGPLDDRSDIAIRSGSLDDSRLVMRRLGGSRMIVVGSPAYLELNGMP
CCEEEEEEEECCCCCCCCCCCCEEEECCCCCHHHHHHHHCCCCEEEEEECCCEEEECCCC
ATPDDLDRHNCIGLSGNAKAWPFAATEGQRLLQWGGNLLLGDNESIREAAVSGLGLARLA
CCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHCCCEEECCCHHHHHHHHHHHHHHHHH
RFHVDADLDAGRLVPVLEAFNPGDEEEINAVFVGPSEHLPMRVHALLEFLKERIRIGPRA
HHHCCCCCCCCCHHHHHHHCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHCCCCC
AGDRSDAPMLGARAVVTRLR
CCCCCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]