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The map label for this gene is radC [C]

Identifier: 83719104

GI number: 83719104

Start: 898923

End: 899711

Strand: Reverse

Name: radC [C]

Synonym: BTH_I0781

Alternate gene names: 83719104

Gene position: 899711-898923 (Counterclockwise)

Preceding gene: 83719470

Following gene: 83720970

Centisome position: 23.62

GC content: 73.26

Gene sequence:

>789_bases
ATGCAATACGAGATTGTCTCGGCCGGCGAAAACGTCGGCGACGAACCCGAGCGCGAGCGGCCCGTCGCGCAGGCCGCCGC
AGCACCCGGCATTCCGCGGCCCGCCGCATTGCCGGCCGCGGGCGCAGCGCGCCGCGGCCGCGATCTGCCGCGCGAGCGCC
TGCTTGCGCGCGGCCCGGCCGCGCTGTCCGACGCGGAGCTCGTCGCGCTCCTGCTCGGCTCGGGCCTGCCCGGCCACGAC
GTGTTCGCGCTCGCGCACACGCTGCTCACGCGCTTCGGCTCGCTGCGCGCGCTGCTCGACGCGGCGCCCGACGATTTCAA
GGGCCTGCGCGGGATCGGCCCCGCGCGCACCGCGATCCTCGTCGCCGTCGTCGAGCTCGCGCGCCGCGCGCTCGCCGAGA
AGGCCCGCGAGCGGCCGCTCGTCGATTCGCCGGGCGCGGTCGACGATTATCTGCGGCTCCTGATCGGCACGCGGCCGCGC
GAAGTGTTCGTCTGCCTTTTTCTCGACGCGCGGCACCGGCTCGTGCAAACGGAAGAAACCGCGCACGGCTCGCTCACGCG
GATGGCCGTCTATCCGCGCGAAATCGTGCGGCGCGCGCTCGCGCTGAATGCGGCTGCGCTCATCGTCGCGCACAATCACC
CGTCGGGCGCGGTGCGGCCGAGCGCCGCGGACCGGCACCTCACGCGCGTGCTGCGCGACGCGCTCGCGCTCGTCGACGTC
CAGTTGATCGATCATTTCGTCGTCGGCGCGAACGATACGTTTTCGTTCGCGCAGGCGGGCTGGATCTAG

Upstream 100 bases:

>100_bases
GGCGCAGCGCAAAGCCCATATTGTAAGTCACCTCGGCGATCGAAGCGGAATGCCGGCGCGATTCGCCTTGCGAGCACGCA
GGATATTGGAGGTCAACAGC

Downstream 100 bases:

>100_bases
CGCGCCGCGCACAACGCGCCGCACGCACGGCCGGGCCCCAGCGCCCCGCGACATCCGCATGCGAAATTGGGTTTGATTTT
CCTGAAGTTTTTCTGTTAGA

Product: DNA repair protein RadC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 262; Mature: 262

Protein sequence:

>262_residues
MQYEIVSAGENVGDEPERERPVAQAAAAPGIPRPAALPAAGAARRGRDLPRERLLARGPAALSDAELVALLLGSGLPGHD
VFALAHTLLTRFGSLRALLDAAPDDFKGLRGIGPARTAILVAVVELARRALAEKARERPLVDSPGAVDDYLRLLIGTRPR
EVFVCLFLDARHRLVQTEETAHGSLTRMAVYPREIVRRALALNAAALIVAHNHPSGAVRPSAADRHLTRVLRDALALVDV
QLIDHFVVGANDTFSFAQAGWI

Sequences:

>Translated_262_residues
MQYEIVSAGENVGDEPERERPVAQAAAAPGIPRPAALPAAGAARRGRDLPRERLLARGPAALSDAELVALLLGSGLPGHD
VFALAHTLLTRFGSLRALLDAAPDDFKGLRGIGPARTAILVAVVELARRALAEKARERPLVDSPGAVDDYLRLLIGTRPR
EVFVCLFLDARHRLVQTEETAHGSLTRMAVYPREIVRRALALNAAALIVAHNHPSGAVRPSAADRHLTRVLRDALALVDV
QLIDHFVVGANDTFSFAQAGWI
>Mature_262_residues
MQYEIVSAGENVGDEPERERPVAQAAAAPGIPRPAALPAAGAARRGRDLPRERLLARGPAALSDAELVALLLGSGLPGHD
VFALAHTLLTRFGSLRALLDAAPDDFKGLRGIGPARTAILVAVVELARRALAEKARERPLVDSPGAVDDYLRLLIGTRPR
EVFVCLFLDARHRLVQTEETAHGSLTRMAVYPREIVRRALALNAAALIVAHNHPSGAVRPSAADRHLTRVLRDALALVDV
QLIDHFVVGANDTFSFAQAGWI

Specific function: Involved In DNA Repair. [C]

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family [H]

Homologues:

Organism=Escherichia coli, GI87082300, Length=214, Percent_Identity=41.588785046729, Blast_Score=184, Evalue=6e-48,
Organism=Escherichia coli, GI2367100, Length=120, Percent_Identity=45.8333333333333, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI1788997, Length=118, Percent_Identity=44.9152542372881, Blast_Score=108, Evalue=3e-25,
Organism=Escherichia coli, GI1788312, Length=118, Percent_Identity=45.7627118644068, Blast_Score=107, Evalue=1e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010994
- InterPro:   IPR001405
- InterPro:   IPR020891 [H]

Pfam domain/function: PF04002 DUF2466 [H]

EC number: NA

Molecular weight: Translated: 28065; Mature: 28065

Theoretical pI: Translated: 9.19; Mature: 9.19

Prosite motif: PS01302 RADC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQYEIVSAGENVGDEPERERPVAQAAAAPGIPRPAALPAAGAARRGRDLPRERLLARGPA
CCEEEECCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCCHHHHHHCCCC
ALSDAELVALLLGSGLPGHDVFALAHTLLTRFGSLRALLDAAPDDFKGLRGIGPARTAIL
CCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCHHHHHHH
VAVVELARRALAEKARERPLVDSPGAVDDYLRLLIGTRPREVFVCLFLDARHRLVQTEET
HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCHHEEEEEEHHHHHHHHHCCHH
AHGSLTRMAVYPREIVRRALALNAAALIVAHNHPSGAVRPSAADRHLTRVLRDALALVDV
HCCCHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHH
QLIDHFVVGANDTFSFAQAGWI
HHHHHHHCCCCCCHHHHHCCCC
>Mature Secondary Structure
MQYEIVSAGENVGDEPERERPVAQAAAAPGIPRPAALPAAGAARRGRDLPRERLLARGPA
CCEEEECCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCCHHHHHHCCCC
ALSDAELVALLLGSGLPGHDVFALAHTLLTRFGSLRALLDAAPDDFKGLRGIGPARTAIL
CCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCHHHHHHH
VAVVELARRALAEKARERPLVDSPGAVDDYLRLLIGTRPREVFVCLFLDARHRLVQTEET
HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCHHEEEEEEHHHHHHHHHCCHH
AHGSLTRMAVYPREIVRRALALNAAALIVAHNHPSGAVRPSAADRHLTRVLRDALALVDV
HCCCHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHH
QLIDHFVVGANDTFSFAQAGWI
HHHHHHHCCCCCCHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA