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The map label for this gene is ydcO [H]

Identifier: 83719068

GI number: 83719068

Start: 1089391

End: 1090608

Strand: Reverse

Name: ydcO [H]

Synonym: BTH_I0963

Alternate gene names: 83719068

Gene position: 1090608-1089391 (Counterclockwise)

Preceding gene: 83719619

Following gene: 83720455

Centisome position: 28.63

GC content: 70.77

Gene sequence:

>1218_bases
ATGAGCAGTCAGCCTCCCGCCTCCAATCTGTCGCCCACCGTCGCGCGGCCGGGTTTTCTCGCCGACACGTCGCCGTCCAC
GCTCGTCGCGGGCTTCGTCGCGATGATGACGGGTTACACGAGCTCGCTCGTGCTGATGTTCCAGGCGGGCCGCGCCGCGC
ACCTGAGCGACGCGCAGATCTCGTCATGGATCTGGGCGCTGTCGCTCGGCATGGCCGTGACGACGATCGGGCTGTCGATG
CGGTATCGCGCGCCGATCGTCGTCGCATGGTCGACGCCCGGCGCGGCGCTCCTCGTCGCGTCGCTGCCGGGCGTCGCGTA
TGCGGACGCGATCGGCGCATTCGTCGTCTGCGCGCTGCTGCTCGCCGCCGTCGGCGCGAGCGGCCTGTTCGACACGCTGA
TGCGCCGGATCCCGTCCGGCATCGCCGCCGCGCTCCTCGCCGGCATCCTGTTCGAGATCGGCATCGAGATCTTCCGCGCC
GCGCAGTTCCAGACCGCGCTCGTGCTCGCGATGTTCTTCACGTACCTGATCGTCAAGCGCGCGGCGCCGCGCTATGCGAT
CGTCGCGACGCTCGCAGCGGGCGTCGCGACCGCAGGCGCGCTCGGCCTGCTCGATTTCAGCCGCTTTCACGTCGCGCTCG
CGCGGCCCGTGTTCACGATGCCGTCGTTCTCGATCTCGGCGATCGTGAGCATCGGCATTCCGCTCTTCGTCGTCGCGATG
GCGTCGCAGAACGTGCCCGGCATCGCGGTGCTGCGCGCGGACGGCTACGACACGCCGTCGTCGCCGCTCATCGCGACGAC
GGGCATCGCGTCGCTCGTGCTCGCGCCGTTCGGCTCGCACGGGATCAACCTCGCGGCGATCACGGCCGCGATCTGCACCG
GCCCCGAGGCGCACGACGATCGCGCGAAGCGCTACACGGCGGCCGTGTGGTGCGGCACGTTCTACCTCGTCGCGGGCGTG
TTCGGCGCGACGATCGCCGCGCTCTTCGGCGCGCTGCCGAAGGCGCTCGTCGTGTCCGTCGCCGCGCTCGCGCTGTTCGG
CTCGATTATGAGCGGCCTCACCCACGCGATGCAGGACGCGCGCCAGCGCGAAGCGGCGCTCGTCACGTTCATGGTGACGG
CGTCGGGCCTCACGCTGCTGTCGATCGGCTCGGCGTTCTGGGGGCTCGTCGCGGGGGTGCTCACGCAGGCGATTCTCAAC
GCGCGCCGCGCCACCTGA

Upstream 100 bases:

>100_bases
CGCACGCTAAGCAAGTGACGCGCCCGCCGCGCGCGTTGCCCGCCGATTCCGCCGTTTTTCAACGCCTCACCTTCACCGTC
TCAGACCCGACGTTTCACCG

Downstream 100 bases:

>100_bases
CGTCCGTCGGGCCCGCGGCGGAATCGGGCGCGGTTCGCGCGCGCTCCGCGTATTTCGCCTCCGGGCCGCGCCGCTCGCGC
GCCGCGGCGGCCATTCGACG

Product: benzoate transport protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 405; Mature: 404

Protein sequence:

>405_residues
MSSQPPASNLSPTVARPGFLADTSPSTLVAGFVAMMTGYTSSLVLMFQAGRAAHLSDAQISSWIWALSLGMAVTTIGLSM
RYRAPIVVAWSTPGAALLVASLPGVAYADAIGAFVVCALLLAAVGASGLFDTLMRRIPSGIAAALLAGILFEIGIEIFRA
AQFQTALVLAMFFTYLIVKRAAPRYAIVATLAAGVATAGALGLLDFSRFHVALARPVFTMPSFSISAIVSIGIPLFVVAM
ASQNVPGIAVLRADGYDTPSSPLIATTGIASLVLAPFGSHGINLAAITAAICTGPEAHDDRAKRYTAAVWCGTFYLVAGV
FGATIAALFGALPKALVVSVAALALFGSIMSGLTHAMQDARQREAALVTFMVTASGLTLLSIGSAFWGLVAGVLTQAILN
ARRAT

Sequences:

>Translated_405_residues
MSSQPPASNLSPTVARPGFLADTSPSTLVAGFVAMMTGYTSSLVLMFQAGRAAHLSDAQISSWIWALSLGMAVTTIGLSM
RYRAPIVVAWSTPGAALLVASLPGVAYADAIGAFVVCALLLAAVGASGLFDTLMRRIPSGIAAALLAGILFEIGIEIFRA
AQFQTALVLAMFFTYLIVKRAAPRYAIVATLAAGVATAGALGLLDFSRFHVALARPVFTMPSFSISAIVSIGIPLFVVAM
ASQNVPGIAVLRADGYDTPSSPLIATTGIASLVLAPFGSHGINLAAITAAICTGPEAHDDRAKRYTAAVWCGTFYLVAGV
FGATIAALFGALPKALVVSVAALALFGSIMSGLTHAMQDARQREAALVTFMVTASGLTLLSIGSAFWGLVAGVLTQAILN
ARRAT
>Mature_404_residues
SSQPPASNLSPTVARPGFLADTSPSTLVAGFVAMMTGYTSSLVLMFQAGRAAHLSDAQISSWIWALSLGMAVTTIGLSMR
YRAPIVVAWSTPGAALLVASLPGVAYADAIGAFVVCALLLAAVGASGLFDTLMRRIPSGIAAALLAGILFEIGIEIFRAA
QFQTALVLAMFFTYLIVKRAAPRYAIVATLAAGVATAGALGLLDFSRFHVALARPVFTMPSFSISAIVSIGIPLFVVAMA
SQNVPGIAVLRADGYDTPSSPLIATTGIASLVLAPFGSHGINLAAITAAICTGPEAHDDRAKRYTAAVWCGTFYLVAGVF
GATIAALFGALPKALVVSVAALALFGSIMSGLTHAMQDARQREAALVTFMVTASGLTLLSIGSAFWGLVAGVLTQAILNA
RRAT

Specific function: Unknown

COG id: COG3135

COG function: function code Q; Uncharacterized protein involved in benzoate metabolism

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87081909, Length=376, Percent_Identity=46.5425531914894, Blast_Score=322, Evalue=3e-89,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004711 [H]

Pfam domain/function: PF03594 BenE [H]

EC number: NA

Molecular weight: Translated: 41557; Mature: 41426

Theoretical pI: Translated: 9.84; Mature: 9.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSQPPASNLSPTVARPGFLADTSPSTLVAGFVAMMTGYTSSLVLMFQAGRAAHLSDAQI
CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHEEECCCCCCCCHHHH
SSWIWALSLGMAVTTIGLSMRYRAPIVVAWSTPGAALLVASLPGVAYADAIGAFVVCALL
HHHHHHHHHHHHHHHHHHHEEECCCEEEEECCCCCEEHEECCCCHHHHHHHHHHHHHHHH
LAAVGASGLFDTLMRRIPSGIAAALLAGILFEIGIEIFRAAQFQTALVLAMFFTYLIVKR
HHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAPRYAIVATLAAGVATAGALGLLDFSRFHVALARPVFTMPSFSISAIVSIGIPLFVVAM
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
ASQNVPGIAVLRADGYDTPSSPLIATTGIASLVLAPFGSHGINLAAITAAICTGPEAHDD
HCCCCCCEEEEEECCCCCCCCCEEEHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCH
RAKRYTAAVWCGTFYLVAGVFGATIAALFGALPKALVVSVAALALFGSIMSGLTHAMQDA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RQREAALVTFMVTASGLTLLSIGSAFWGLVAGVLTQAILNARRAT
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SSQPPASNLSPTVARPGFLADTSPSTLVAGFVAMMTGYTSSLVLMFQAGRAAHLSDAQI
CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHEEECCCCCCCCHHHH
SSWIWALSLGMAVTTIGLSMRYRAPIVVAWSTPGAALLVASLPGVAYADAIGAFVVCALL
HHHHHHHHHHHHHHHHHHHEEECCCEEEEECCCCCEEHEECCCCHHHHHHHHHHHHHHHH
LAAVGASGLFDTLMRRIPSGIAAALLAGILFEIGIEIFRAAQFQTALVLAMFFTYLIVKR
HHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAPRYAIVATLAAGVATAGALGLLDFSRFHVALARPVFTMPSFSISAIVSIGIPLFVVAM
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
ASQNVPGIAVLRADGYDTPSSPLIATTGIASLVLAPFGSHGINLAAITAAICTGPEAHDD
HCCCCCCEEEEEECCCCCCCCCEEEHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCH
RAKRYTAAVWCGTFYLVAGVFGATIAALFGALPKALVVSVAALALFGSIMSGLTHAMQDA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RQREAALVTFMVTASGLTLLSIGSAFWGLVAGVLTQAILNARRAT
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]