| Definition | Burkholderia thailandensis E264 chromosome chromosome I, complete sequence. |
|---|---|
| Accession | NC_007651 |
| Length | 3,809,201 |
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The map label for this gene is chb [H]
Identifier: 83719059
GI number: 83719059
Start: 500405
End: 502915
Strand: Reverse
Name: chb [H]
Synonym: BTH_I0451
Alternate gene names: 83719059
Gene position: 502915-500405 (Counterclockwise)
Preceding gene: 83719936
Following gene: 83719504
Centisome position: 13.2
GC content: 71.01
Gene sequence:
>2511_bases ATGAACCGAATCTCGCATTCCCTGTGCGCCGCGCTATTGGCCGCCGCGGCGCTGTTGCCCGCGACTTCGCGCGCGCAACC GCCCGCGCGCGCCACGGCCGGCCCGGCCGCGCCCGCGACAGCCGTCCCCGTTCGGCCCGCTTCCGCGCCCGCCACGCCCA CCGAGCTTGCCGCGCTGCTCGCCAACGGCCTCGCGGTGCGCGTCGCCGTCGACAACAATCACGCGGCGTCGGCCGGCGTG CCGTGCGCCGATCTCGGCGCGGACTGGGCGAGTTGCGCGACGGGCCGCCTGATCCTGCAGAACCGCGGCCACCCGACCCT CACCGACGGCGGCTGGAAGCTCTATCTGCACAGCATCCGCCGGCTGCTCAGGATCGACCGCCCCGGCTTCACGCTGCGTC ATCTGACAGGCGATCTGTACGAGCTGACGCCGCAACCCGGCACGGTGAGGCTCGCGCAGGGCGAGCGGATCGAGCTGCCG TTCGTCGCCGAATACTGGCTGCGCCGATACAGTGACGTGATTCCGCGCCCGTACGTCGTCGTCGACGGCGCGGCGCCCGC GGTGCTGCGCTACGACGATACCGACGACGAGCTGCGCTACGTCGAAAAGCTGCCCGCCGACGCGCAGAACAATTCGCCCG GCAATGCGCCGCCCGCCGCCGCGCAGCCGGTCGCGAACCGCGCGCTGCCGAGCGTGAAGCGGCAGCGCGCGCTGTCCGGC GCGCTCGATCTGCGCGGCGTCGAGCTGACGCTGCCGGAGTTGTCGTTCGCACAGGTCGCCGCGCTGCGCGAACGGGCGAG CGCGCTCGGACTCGACGGCGCGCGCACGCCCGTGTGGGGCATCGTCGCGCCGCGCCGGCTGCCCGCCGACATCGCGGTGC CGGGCGGCTACCGGCTCGCGATCGGCCCGCGCGGCGCGTTCGTCGAGGGCTACGATCGCGCGGGCCTCTATTACGGCGTG CAGACGCTCTTCTCGCTCGTGCCGGCGGGCGGCGCCACGGTGCCCGCGATGCTGATCGAAGACGCGCCGCGCTTCGCGCA TCGCGGCATGCACGTCGACCTCGCGCGCAACTTCAAGCCGCCGGCGACGCTGCGCCGCCTGATCGACCAGATGAGCGCGT ACAAGCTCAACCGGCTGCATCTGCACCTGTCCGACGACGAAGGCTGGCGCATCGAGATTCCCGGCCTGCCGGAGCTGACC GACGTCGGCGCGCGCCGCTGCCACGATCCGAGCGAGACGCGCTGCCTGCTGCCGCAGCTCGGCTCGGGGCCCGACAATCG CTCGGGCGGCGGCTACCTGACGCGCGACGATTACGTCGCGCTGCTGCGCTACGCGGCCGATCGCTTCGTCGAAGTGATCC CCGAGATCGACATGCCCGCGCACTCGCGCGCGGCGGTCGTATCGATGGAGGCGCGCTATCGCCGCCTGCACGCGGCGGGG CGCGAGCGCGAAGCGAACGCGTATCGGCTGCTCGATCCGCAGGACACCTCGAATCTGCTGACCGTGCAGTTCTACGACCG GCGCAGCGATCTGAACCCGTGCATGCCGGGCGCGCTGAACTTCGCGTCGAAGGTGATCCGCGAGATCGCCGCGATGCATG CGGACGCGCAGGCGCCGCTGCGGATCTGGCATTTCGGCGGCGACGAGGCGAAGAACATCCTGCTCGGCGCGGGTTTCCAG CCGCTCGACGGCGCCGATCCCGGCAAGGGCCGCGTCGATCTCGCCGCGCAGGACAAGCCGTGGGCGCGCTCGCCCGCCTG TACGGCGCTGCTTCGGCGCGGCGAGATCAAATCGATCGACGAGTTGCCGACGCGCTTCGCGAAGCAGGTCAGCGCCGTCG TCAACGCGAACGGGATCGGCACGATGGCCGCGTGGCAGGACGGCATCAAGCACGCGAGCGGGCCGCAGGAGTTCAGCACG CGGCACGTGATGGTGTCGCTGTGGGACACGATCTTCTGGGGCGCATCCGACAGCGCGCGCGACCTGAGCGCGAAGGGTTA CCGGACGGTGCTTGCGTTGCCCGACTACCTGTACTTCGATTTCCCGTACACGCGCAACCCGCGCGAGCGCGGCTACTACT GGGGATCGCAGGCGACGGACGAGTACAAGGTGTTTTCGCTCGCGCCGGAAAACCTGCCGCAAAACGCCGAGGTGTTCGGC GACCGCGACGGCAATCCGTTCGAGGTGGCGAGCGCCGGCGCGGCTCCGCGCATCGAGGGCATTCAGGGCCAGGCGTGGGG CGAAGTGATGCGCAACGGGCAACTGCTCGAATACATGGTGTATCCGCGCCTGCTCGCGCTCGCCGAACGCGCGTGGCACA AGGCCGATTGGGAGCTGCCGTACGCGGCGGGCGTGCGCTACAAGCTCGGCGACACGCACCATGTCGATATGGCCGCGCTC GAGCGCGACTGGGCGGGCTTCGCGACGGTGCTCAAGCAGCGCGAGCTGCCGAAGCTCGAGCGCGCGGGCATCGGCTATCG CCAGCCGACGTTCACGCTGACGGGCGAATGA
Upstream 100 bases:
>100_bases CGCGCGGCCTCTGAGCCTTCCCCGCAGCTTCCTTGAAAGACCCGATCGCAGCGACGTATTTCCACGGCGTCGTATCGCCG TTTTTTTACCAAGGAATCCC
Downstream 100 bases:
>100_bases CGGGCAGCCGGACGATGCGCGGCTTGCGCGTCGCCCGGCTCGCCGGTTGGCTGCGGCTTGCATGGCTGCGTCGAACCGCA TGTCGCGAAACCGCGCTCTC
Product: beta-N-acetylhexosaminidase
Products: NA
Alternate protein names: Beta-N-acetylhexosaminidase; N-acetyl-beta-glucosaminidase [H]
Number of amino acids: Translated: 836; Mature: 836
Protein sequence:
>836_residues MNRISHSLCAALLAAAALLPATSRAQPPARATAGPAAPATAVPVRPASAPATPTELAALLANGLAVRVAVDNNHAASAGV PCADLGADWASCATGRLILQNRGHPTLTDGGWKLYLHSIRRLLRIDRPGFTLRHLTGDLYELTPQPGTVRLAQGERIELP FVAEYWLRRYSDVIPRPYVVVDGAAPAVLRYDDTDDELRYVEKLPADAQNNSPGNAPPAAAQPVANRALPSVKRQRALSG ALDLRGVELTLPELSFAQVAALRERASALGLDGARTPVWGIVAPRRLPADIAVPGGYRLAIGPRGAFVEGYDRAGLYYGV QTLFSLVPAGGATVPAMLIEDAPRFAHRGMHVDLARNFKPPATLRRLIDQMSAYKLNRLHLHLSDDEGWRIEIPGLPELT DVGARRCHDPSETRCLLPQLGSGPDNRSGGGYLTRDDYVALLRYAADRFVEVIPEIDMPAHSRAAVVSMEARYRRLHAAG REREANAYRLLDPQDTSNLLTVQFYDRRSDLNPCMPGALNFASKVIREIAAMHADAQAPLRIWHFGGDEAKNILLGAGFQ PLDGADPGKGRVDLAAQDKPWARSPACTALLRRGEIKSIDELPTRFAKQVSAVVNANGIGTMAAWQDGIKHASGPQEFST RHVMVSLWDTIFWGASDSARDLSAKGYRTVLALPDYLYFDFPYTRNPRERGYYWGSQATDEYKVFSLAPENLPQNAEVFG DRDGNPFEVASAGAAPRIEGIQGQAWGEVMRNGQLLEYMVYPRLLALAERAWHKADWELPYAAGVRYKLGDTHHVDMAAL ERDWAGFATVLKQRELPKLERAGIGYRQPTFTLTGE
Sequences:
>Translated_836_residues MNRISHSLCAALLAAAALLPATSRAQPPARATAGPAAPATAVPVRPASAPATPTELAALLANGLAVRVAVDNNHAASAGV PCADLGADWASCATGRLILQNRGHPTLTDGGWKLYLHSIRRLLRIDRPGFTLRHLTGDLYELTPQPGTVRLAQGERIELP FVAEYWLRRYSDVIPRPYVVVDGAAPAVLRYDDTDDELRYVEKLPADAQNNSPGNAPPAAAQPVANRALPSVKRQRALSG ALDLRGVELTLPELSFAQVAALRERASALGLDGARTPVWGIVAPRRLPADIAVPGGYRLAIGPRGAFVEGYDRAGLYYGV QTLFSLVPAGGATVPAMLIEDAPRFAHRGMHVDLARNFKPPATLRRLIDQMSAYKLNRLHLHLSDDEGWRIEIPGLPELT DVGARRCHDPSETRCLLPQLGSGPDNRSGGGYLTRDDYVALLRYAADRFVEVIPEIDMPAHSRAAVVSMEARYRRLHAAG REREANAYRLLDPQDTSNLLTVQFYDRRSDLNPCMPGALNFASKVIREIAAMHADAQAPLRIWHFGGDEAKNILLGAGFQ PLDGADPGKGRVDLAAQDKPWARSPACTALLRRGEIKSIDELPTRFAKQVSAVVNANGIGTMAAWQDGIKHASGPQEFST RHVMVSLWDTIFWGASDSARDLSAKGYRTVLALPDYLYFDFPYTRNPRERGYYWGSQATDEYKVFSLAPENLPQNAEVFG DRDGNPFEVASAGAAPRIEGIQGQAWGEVMRNGQLLEYMVYPRLLALAERAWHKADWELPYAAGVRYKLGDTHHVDMAAL ERDWAGFATVLKQRELPKLERAGIGYRQPTFTLTGE >Mature_836_residues MNRISHSLCAALLAAAALLPATSRAQPPARATAGPAAPATAVPVRPASAPATPTELAALLANGLAVRVAVDNNHAASAGV PCADLGADWASCATGRLILQNRGHPTLTDGGWKLYLHSIRRLLRIDRPGFTLRHLTGDLYELTPQPGTVRLAQGERIELP FVAEYWLRRYSDVIPRPYVVVDGAAPAVLRYDDTDDELRYVEKLPADAQNNSPGNAPPAAAQPVANRALPSVKRQRALSG ALDLRGVELTLPELSFAQVAALRERASALGLDGARTPVWGIVAPRRLPADIAVPGGYRLAIGPRGAFVEGYDRAGLYYGV QTLFSLVPAGGATVPAMLIEDAPRFAHRGMHVDLARNFKPPATLRRLIDQMSAYKLNRLHLHLSDDEGWRIEIPGLPELT DVGARRCHDPSETRCLLPQLGSGPDNRSGGGYLTRDDYVALLRYAADRFVEVIPEIDMPAHSRAAVVSMEARYRRLHAAG REREANAYRLLDPQDTSNLLTVQFYDRRSDLNPCMPGALNFASKVIREIAAMHADAQAPLRIWHFGGDEAKNILLGAGFQ PLDGADPGKGRVDLAAQDKPWARSPACTALLRRGEIKSIDELPTRFAKQVSAVVNANGIGTMAAWQDGIKHASGPQEFST RHVMVSLWDTIFWGASDSARDLSAKGYRTVLALPDYLYFDFPYTRNPRERGYYWGSQATDEYKVFSLAPENLPQNAEVFG DRDGNPFEVASAGAAPRIEGIQGQAWGEVMRNGQLLEYMVYPRLLALAERAWHKADWELPYAAGVRYKLGDTHHVDMAAL ERDWAGFATVLKQRELPKLERAGIGYRQPTFTLTGE
Specific function: Digests the beta-1,4-glycosidic bonds in N- acetylglucosamine (GlcNAc) oligomers (mainly dimers) [H]
COG id: COG3525
COG function: function code G; N-acetyl-beta-hexosaminidase
Gene ontology:
Cell location: Periplasm [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyl hydrolase 20 family [H]
Homologues:
Organism=Drosophila melanogaster, GI17933586, Length=479, Percent_Identity=24.8434237995825, Blast_Score=78, Evalue=2e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015882 - InterPro: IPR008965 - InterPro: IPR004866 - InterPro: IPR012291 - InterPro: IPR013812 - InterPro: IPR001540 - InterPro: IPR004867 - InterPro: IPR015883 - InterPro: IPR017853 - InterPro: IPR013781 - InterPro: IPR014756 [H]
Pfam domain/function: PF03173 CHB_HEX; PF03174 CHB_HEX_C; PF00728 Glyco_hydro_20; PF02838 Glyco_hydro_20b [H]
EC number: =3.2.1.52 [H]
Molecular weight: Translated: 91343; Mature: 91343
Theoretical pI: Translated: 8.08; Mature: 8.08
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNRISHSLCAALLAAAALLPATSRAQPPARATAGPAAPATAVPVRPASAPATPTELAALL CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH ANGLAVRVAVDNNHAASAGVPCADLGADWASCATGRLILQNRGHPTLTDGGWKLYLHSIR HCCEEEEEEECCCCCCCCCCCHHHHCCCHHHHCCCEEEEECCCCCCCCCCCHHHHHHHHH RLLRIDRPGFTLRHLTGDLYELTPQPGTVRLAQGERIELPFVAEYWLRRYSDVIPRPYVV HHHHCCCCCCCHHHHCCCCEEECCCCCEEEECCCCEECCCHHHHHHHHHHHHHCCCCEEE VDGAAPAVLRYDDTDDELRYVEKLPADAQNNSPGNAPPAAAQPVANRALPSVKRQRALSG ECCCCCEEEEECCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH ALDLRGVELTLPELSFAQVAALRERASALGLDGARTPVWGIVAPRRLPADIAVPGGYRLA HHCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCEECCCCEEEE IGPRGAFVEGYDRAGLYYGVQTLFSLVPAGGATVPAMLIEDAPRFAHRGMHVDLARNFKP ECCCCCEECCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHCCHHHHHCCCEEEHHCCCCC PATLRRLIDQMSAYKLNRLHLHLSDDEGWRIEIPGLPELTDVGARRCHDPSETRCLLPQL HHHHHHHHHHHHHCEEEEEEEEEECCCCCEEECCCCCCHHHHHHHHCCCCCCCEEECCCC GSGPDNRSGGGYLTRDDYVALLRYAADRFVEVIPEIDMPAHSRAAVVSMEARYRRLHAAG CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEHHHHHHHHHHCC REREANAYRLLDPQDTSNLLTVQFYDRRSDLNPCMPGALNFASKVIREIAAMHADAQAPL CCCCCCCEEEECCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCE RIWHFGGDEAKNILLGAGFQPLDGADPGKGRVDLAAQDKPWARSPACTALLRRGEIKSID EEEECCCCCCCEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHCCCCCCHH ELPTRFAKQVSAVVNANGIGTMAAWQDGIKHASGPQEFSTRHVMVSLWDTIFWGASDSAR HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCC DLSAKGYRTVLALPDYLYFDFPYTRNPRERGYYWGSQATDEYKVFSLAPENLPQNAEVFG CCCCCCCEEEEECCCEEEEECCCCCCCHHCCEECCCCCCCCEEEEEECCCCCCCCCCCCC DRDGNPFEVASAGAAPRIEGIQGQAWGEVMRNGQLLEYMVYPRLLALAERAWHKADWELP CCCCCCEEEECCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCC YAAGVRYKLGDTHHVDMAALERDWAGFATVLKQRELPKLERAGIGYRQPTFTLTGE HHCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCEEECCC >Mature Secondary Structure MNRISHSLCAALLAAAALLPATSRAQPPARATAGPAAPATAVPVRPASAPATPTELAALL CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH ANGLAVRVAVDNNHAASAGVPCADLGADWASCATGRLILQNRGHPTLTDGGWKLYLHSIR HCCEEEEEEECCCCCCCCCCCHHHHCCCHHHHCCCEEEEECCCCCCCCCCCHHHHHHHHH RLLRIDRPGFTLRHLTGDLYELTPQPGTVRLAQGERIELPFVAEYWLRRYSDVIPRPYVV HHHHCCCCCCCHHHHCCCCEEECCCCCEEEECCCCEECCCHHHHHHHHHHHHHCCCCEEE VDGAAPAVLRYDDTDDELRYVEKLPADAQNNSPGNAPPAAAQPVANRALPSVKRQRALSG ECCCCCEEEEECCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH ALDLRGVELTLPELSFAQVAALRERASALGLDGARTPVWGIVAPRRLPADIAVPGGYRLA HHCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCEECCCCEEEE IGPRGAFVEGYDRAGLYYGVQTLFSLVPAGGATVPAMLIEDAPRFAHRGMHVDLARNFKP ECCCCCEECCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHCCHHHHHCCCEEEHHCCCCC PATLRRLIDQMSAYKLNRLHLHLSDDEGWRIEIPGLPELTDVGARRCHDPSETRCLLPQL HHHHHHHHHHHHHCEEEEEEEEEECCCCCEEECCCCCCHHHHHHHHCCCCCCCEEECCCC GSGPDNRSGGGYLTRDDYVALLRYAADRFVEVIPEIDMPAHSRAAVVSMEARYRRLHAAG CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEHHHHHHHHHHCC REREANAYRLLDPQDTSNLLTVQFYDRRSDLNPCMPGALNFASKVIREIAAMHADAQAPL CCCCCCCEEEECCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCE RIWHFGGDEAKNILLGAGFQPLDGADPGKGRVDLAAQDKPWARSPACTALLRRGEIKSID EEEECCCCCCCEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHCCCCCCHH ELPTRFAKQVSAVVNANGIGTMAAWQDGIKHASGPQEFSTRHVMVSLWDTIFWGASDSAR HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCC DLSAKGYRTVLALPDYLYFDFPYTRNPRERGYYWGSQATDEYKVFSLAPENLPQNAEVFG CCCCCCCEEEEECCCEEEEECCCCCCCHHCCEECCCCCCCCEEEEEECCCCCCCCCCCCC DRDGNPFEVASAGAAPRIEGIQGQAWGEVMRNGQLLEYMVYPRLLALAERAWHKADWELP CCCCCCEEEECCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCC YAAGVRYKLGDTHHVDMAALERDWAGFATVLKQRELPKLERAGIGYRQPTFTLTGE HHCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8621090; 8673609 [H]