Click here to switch to the map view.

The map label for this gene is yfeR [H]

Identifier: 83719035

GI number: 83719035

Start: 2935367

End: 2936269

Strand: Reverse

Name: yfeR [H]

Synonym: BTH_I2569

Alternate gene names: 83719035

Gene position: 2936269-2935367 (Counterclockwise)

Preceding gene: 83721641

Following gene: 83718805

Centisome position: 77.08

GC content: 69.88

Gene sequence:

>903_bases
ATGAATATCACGCTCAGGCAGTTACGCGTGTTCATCGAGGTCGCGCGGCTCAAGAGCTTCAGCCGGGCGGGCGACGAGAT
CGGTCTTACGCAGTCGGCCGTCAGTCGCTCGGTGCGCGAGCTGGAGGGGGAGATCGGACTCAAGCTGATCGATCGAACCA
CGCGCGACGTGCAGTTGACCGATGTCGGCACCAATCTGATCGCGAGCGTGTCGCGTTTGCTCGGCGACCTCGACGATGCG
CTGCGCGAGATCCGCGAGATCGGCGAGCAGCGCCGCGGGCGCGTGATCGTCGCGGCGAGCCCGACGATCGCGTGCCGGCT
GATGCCGCGCGTCGTCGCCGCATGCGAGCGGCGCTTTCCGTTCGTCGCGCTCGGCCTGCGCGACGACGTGCAGAGCGACG
TGCTGCGCAAGGTGAAATCGGGCGAGGTCGACTTCGGCGTCGTGATCGGGCCGCTCGCGACGAGCGATTTGATCAGCGAG
CCGTTGATGACCGATTCGTTTTGCCTCGTCGCGCGCGCCGACCATCCGCTTGCCGCGCGCGATCGCGTGCCGTGGACGGC
GCTCGCCGGCGAGCGGCTCGTGTTGCTCGATTACGCATCGGGCAGCCGGCCGTTGATCGACGCGGCGCTCGCGACGCATC
GGGTCGCGGCGAGCGTCGTGCAGGAGCTCGGCCATTCGGCGACGGTGTTCGGCCTCATCGAGGCGGGCGTCGGCGTGAGC
GTGCTGCCGTGGCTGTCGTTGCCGCTGCCGGCCGGCTCGTCGCTCGTCGCGCGTCCGCTCACGCCGCGCGCCGAGCGTAC
CGTCGAGCTCGTGCGGCGGCGCGACCGCTCGCTGTCGCCAGCGGCGGACGCGGTCTGGGGCCTCGTGACGGAAATGCCGG
CGCGAGTCGAGAATCTGGGCTGA

Upstream 100 bases:

>100_bases
TGCGTTTCAGCCGGGTGCTGCACCGCACCGACACACGGCACGCGATCGTCGAGACGCAATACAATCGCGCATCGATGCGT
CCGATTGATGAGGGAATCCC

Downstream 100 bases:

>100_bases
CGAGGCGCCGTGCGAAGGCTGCGCGGCGTGTCGCCGCGCCGTTCGCGCGGGGTGCCGGGGATATGTCTTTTGCCGTACGT
TCTTTGTCTTTACGCACCGG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 300; Mature: 300

Protein sequence:

>300_residues
MNITLRQLRVFIEVARLKSFSRAGDEIGLTQSAVSRSVRELEGEIGLKLIDRTTRDVQLTDVGTNLIASVSRLLGDLDDA
LREIREIGEQRRGRVIVAASPTIACRLMPRVVAACERRFPFVALGLRDDVQSDVLRKVKSGEVDFGVVIGPLATSDLISE
PLMTDSFCLVARADHPLAARDRVPWTALAGERLVLLDYASGSRPLIDAALATHRVAASVVQELGHSATVFGLIEAGVGVS
VLPWLSLPLPAGSSLVARPLTPRAERTVELVRRRDRSLSPAADAVWGLVTEMPARVENLG

Sequences:

>Translated_300_residues
MNITLRQLRVFIEVARLKSFSRAGDEIGLTQSAVSRSVRELEGEIGLKLIDRTTRDVQLTDVGTNLIASVSRLLGDLDDA
LREIREIGEQRRGRVIVAASPTIACRLMPRVVAACERRFPFVALGLRDDVQSDVLRKVKSGEVDFGVVIGPLATSDLISE
PLMTDSFCLVARADHPLAARDRVPWTALAGERLVLLDYASGSRPLIDAALATHRVAASVVQELGHSATVFGLIEAGVGVS
VLPWLSLPLPAGSSLVARPLTPRAERTVELVRRRDRSLSPAADAVWGLVTEMPARVENLG
>Mature_300_residues
MNITLRQLRVFIEVARLKSFSRAGDEIGLTQSAVSRSVRELEGEIGLKLIDRTTRDVQLTDVGTNLIASVSRLLGDLDDA
LREIREIGEQRRGRVIVAASPTIACRLMPRVVAACERRFPFVALGLRDDVQSDVLRKVKSGEVDFGVVIGPLATSDLISE
PLMTDSFCLVARADHPLAARDRVPWTALAGERLVLLDYASGSRPLIDAALATHRVAASVVQELGHSATVFGLIEAGVGVS
VLPWLSLPLPAGSSLVARPLTPRAERTVELVRRRDRSLSPAADAVWGLVTEMPARVENLG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788748, Length=289, Percent_Identity=51.9031141868512, Blast_Score=289, Evalue=1e-79,
Organism=Escherichia coli, GI145693105, Length=293, Percent_Identity=31.3993174061433, Blast_Score=173, Evalue=1e-44,
Organism=Escherichia coli, GI1788481, Length=284, Percent_Identity=33.8028169014084, Blast_Score=128, Evalue=5e-31,
Organism=Escherichia coli, GI157672245, Length=283, Percent_Identity=29.6819787985866, Blast_Score=121, Evalue=7e-29,
Organism=Escherichia coli, GI1790399, Length=283, Percent_Identity=29.3286219081272, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI1787879, Length=256, Percent_Identity=31.640625, Blast_Score=104, Evalue=8e-24,
Organism=Escherichia coli, GI1788887, Length=296, Percent_Identity=25, Blast_Score=98, Evalue=8e-22,
Organism=Escherichia coli, GI1788297, Length=242, Percent_Identity=26.8595041322314, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1786401, Length=176, Percent_Identity=34.0909090909091, Blast_Score=88, Evalue=6e-19,
Organism=Escherichia coli, GI1789204, Length=302, Percent_Identity=27.8145695364238, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1787601, Length=179, Percent_Identity=27.9329608938547, Blast_Score=85, Evalue=6e-18,
Organism=Escherichia coli, GI87081904, Length=181, Percent_Identity=29.2817679558011, Blast_Score=78, Evalue=6e-16,
Organism=Escherichia coli, GI2367136, Length=241, Percent_Identity=25.7261410788382, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1787530, Length=260, Percent_Identity=24.6153846153846, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1787128, Length=159, Percent_Identity=29.559748427673, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1788296, Length=243, Percent_Identity=24.6913580246914, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1789506, Length=251, Percent_Identity=23.9043824701195, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1786713, Length=186, Percent_Identity=29.0322580645161, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1790783, Length=216, Percent_Identity=26.3888888888889, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1790262, Length=193, Percent_Identity=25.3886010362694, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1789173, Length=148, Percent_Identity=31.0810810810811, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1787806, Length=280, Percent_Identity=20.7142857142857, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1790011, Length=112, Percent_Identity=29.4642857142857, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1788626, Length=248, Percent_Identity=28.2258064516129, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI87081978, Length=167, Percent_Identity=28.7425149700599, Blast_Score=62, Evalue=5e-11,
Organism=Escherichia coli, GI1789639, Length=155, Percent_Identity=25.1612903225806, Blast_Score=62, Evalue=5e-11,
Organism=Escherichia coli, GI1787589, Length=152, Percent_Identity=28.9473684210526, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32462; Mature: 32462

Theoretical pI: Translated: 8.08; Mature: 8.08

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNITLRQLRVFIEVARLKSFSRAGDEIGLTQSAVSRSVRELEGEIGLKLIDRTTRDVQLT
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCHHEECCCCCCEEEE
DVGTNLIASVSRLLGDLDDALREIREIGEQRRGRVIVAASPTIACRLMPRVVAACERRFP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHCCC
FVALGLRDDVQSDVLRKVKSGEVDFGVVIGPLATSDLISEPLMTDSFCLVARADHPLAAR
EEEECCHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHCCCCCCCEEEEEECCCCCCCC
DRVPWTALAGERLVLLDYASGSRPLIDAALATHRVAASVVQELGHSATVFGLIEAGVGVS
CCCCEEEECCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHCCCCCE
VLPWLSLPLPAGSSLVARPLTPRAERTVELVRRRDRSLSPAADAVWGLVTEMPARVENLG
EHHHHCCCCCCCCCCEECCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNITLRQLRVFIEVARLKSFSRAGDEIGLTQSAVSRSVRELEGEIGLKLIDRTTRDVQLT
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCHHEECCCCCCEEEE
DVGTNLIASVSRLLGDLDDALREIREIGEQRRGRVIVAASPTIACRLMPRVVAACERRFP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHCCC
FVALGLRDDVQSDVLRKVKSGEVDFGVVIGPLATSDLISEPLMTDSFCLVARADHPLAAR
EEEECCHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHCCCCCCCEEEEEECCCCCCCC
DRVPWTALAGERLVLLDYASGSRPLIDAALATHRVAASVVQELGHSATVFGLIEAGVGVS
CCCCEEEECCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHCCCCCE
VLPWLSLPLPAGSSLVARPLTPRAERTVELVRRRDRSLSPAADAVWGLVTEMPARVENLG
EHHHHCCCCCCCCCCEECCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503 [H]