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The map label for this gene is yhjC [C]

Identifier: 83718934

GI number: 83718934

Start: 433478

End: 434380

Strand: Reverse

Name: yhjC [C]

Synonym: BTH_I0392

Alternate gene names: 83718934

Gene position: 434380-433478 (Counterclockwise)

Preceding gene: 83718532

Following gene: 83720096

Centisome position: 11.4

GC content: 67.33

Gene sequence:

>903_bases
ATGGATCTGAATGCGCTCACGCTGCTCGTCGACATCCTCGACGCGGGCAATCTCAGCAAGGCGGCGCAGCGGCTCAAGAT
GAGCCGCGCGAACGTCAGCTACCGGCTCAACCAGCTGGAAAAATCGATCGGGCTGCAGCTCGTGCGCCGCACGACGCGGC
GCATCGAGCCGACCGAGATCGGGCTGCGGCTCTACGAGCACGGGCGGCGAATCCAGAACGAGTTGCTCGCCGCGCGCGAG
GCGGTCACGACGCTGGGCCAGGATTTGCAGGGGCGCGTGCGGCTTTCGGTGCCGAGCGGCTACGGGCAGCTCGTGATGTC
GAACTGGCTGATCGCGTTCAAGCGGCTCTATCCGGGCATCGTGCTCGACGTCGTGTTCGAGAACCGCATCGAGGATCTGA
TGCGCGACGAAGTCGACATCGCGGTGCGCGTGATGTCCGAGCCGCCACAGAACCTCGTCGCGCGCGACATGGGCGCGGTG
CGCTACGTCGCGTGCGCGTCGCCCGGCTTCGCCGCGACGCACGGCATGCCGACCGAGCTCGACCAGTTGTTCGACGCGCC
CGTCATCACGTCGACGGTGGTCGGCCGGCAGTTGCGGGTCGCCGCGTACCTCGGCGACGAGCGGCACGAGGTGCTGCTCG
AGCCAACGCTCATCTCCGAGAACTTCCTGTTCCTGAGGCAGGCGATCCTGTCCGGGCTCGGCGTCGGAATCGTGCCGGAC
TACGTCGTCCACGACGACGTGCGGCGCGGCGCGGTCGTCACGACGCTCGACGCGTACCGGCTCAGCATCTTCGGCACGCA
CATGTACATGCTGTACATGCCGAACCGCCATCACACGCGCGCGACGTCGACGTTCATCGACTTCGTGCTCGACGAGGCGA
GAAACGCCGGGCGCGGCGGGTGA

Upstream 100 bases:

>100_bases
CCACGATTCTCGATTGATCTAGATTGATTGACAATTCCAGCATTCTTTAACAACCTGTCAAGCCGGTTTTGACAATGTAT
TTCGACATGCAGGCACGGCG

Downstream 100 bases:

>100_bases
CGCGGCGCGCGACGCCGATGTCCGGCGCGGCGCCGCCGCACGGAACAGCCGCGCGGCGATCGCTCGGGCGCGCGCCGACG
AGCCGAATGGGCGAGAGTCA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: ORF2 [H]

Number of amino acids: Translated: 300; Mature: 300

Protein sequence:

>300_residues
MDLNALTLLVDILDAGNLSKAAQRLKMSRANVSYRLNQLEKSIGLQLVRRTTRRIEPTEIGLRLYEHGRRIQNELLAARE
AVTTLGQDLQGRVRLSVPSGYGQLVMSNWLIAFKRLYPGIVLDVVFENRIEDLMRDEVDIAVRVMSEPPQNLVARDMGAV
RYVACASPGFAATHGMPTELDQLFDAPVITSTVVGRQLRVAAYLGDERHEVLLEPTLISENFLFLRQAILSGLGVGIVPD
YVVHDDVRRGAVVTTLDAYRLSIFGTHMYMLYMPNRHHTRATSTFIDFVLDEARNAGRGG

Sequences:

>Translated_300_residues
MDLNALTLLVDILDAGNLSKAAQRLKMSRANVSYRLNQLEKSIGLQLVRRTTRRIEPTEIGLRLYEHGRRIQNELLAARE
AVTTLGQDLQGRVRLSVPSGYGQLVMSNWLIAFKRLYPGIVLDVVFENRIEDLMRDEVDIAVRVMSEPPQNLVARDMGAV
RYVACASPGFAATHGMPTELDQLFDAPVITSTVVGRQLRVAAYLGDERHEVLLEPTLISENFLFLRQAILSGLGVGIVPD
YVVHDDVRRGAVVTTLDAYRLSIFGTHMYMLYMPNRHHTRATSTFIDFVLDEARNAGRGG
>Mature_300_residues
MDLNALTLLVDILDAGNLSKAAQRLKMSRANVSYRLNQLEKSIGLQLVRRTTRRIEPTEIGLRLYEHGRRIQNELLAARE
AVTTLGQDLQGRVRLSVPSGYGQLVMSNWLIAFKRLYPGIVLDVVFENRIEDLMRDEVDIAVRVMSEPPQNLVARDMGAV
RYVACASPGFAATHGMPTELDQLFDAPVITSTVVGRQLRVAAYLGDERHEVLLEPTLISENFLFLRQAILSGLGVGIVPD
YVVHDDVRRGAVVTTLDAYRLSIFGTHMYMLYMPNRHHTRATSTFIDFVLDEARNAGRGG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=292, Percent_Identity=26.027397260274, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI87081978, Length=285, Percent_Identity=27.719298245614, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI1786401, Length=302, Percent_Identity=26.158940397351, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI1789639, Length=260, Percent_Identity=24.2307692307692, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1789440, Length=272, Percent_Identity=25, Blast_Score=85, Evalue=6e-18,
Organism=Escherichia coli, GI1787589, Length=285, Percent_Identity=23.5087719298246, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI1788297, Length=252, Percent_Identity=28.968253968254, Blast_Score=68, Evalue=8e-13,
Organism=Escherichia coli, GI1787128, Length=296, Percent_Identity=19.9324324324324, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1788706, Length=161, Percent_Identity=31.055900621118, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1786508, Length=253, Percent_Identity=24.1106719367589, Blast_Score=64, Evalue=9e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33560; Mature: 33560

Theoretical pI: Translated: 7.79; Mature: 7.79

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLNALTLLVDILDAGNLSKAAQRLKMSRANVSYRLNQLEKSIGLQLVRRTTRRIEPTEI
CCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
GLRLYEHGRRIQNELLAAREAVTTLGQDLQGRVRLSVPSGYGQLVMSNWLIAFKRLYPGI
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCH
VLDVVFENRIEDLMRDEVDIAVRVMSEPPQNLVARDMGAVRYVACASPGFAATHGMPTEL
HHHHHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHCHHEEEEECCCCCCCCCCCCHHH
DQLFDAPVITSTVVGRQLRVAAYLGDERHEVLLEPTLISENFLFLRQAILSGLGVGIVPD
HHHHCCCHHHHHHHHHHHEEHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCC
YVVHDDVRRGAVVTTLDAYRLSIFGTHMYMLYMPNRHHTRATSTFIDFVLDEARNAGRGG
HHHHHHHHCCEEEEEHHHHHHHHEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MDLNALTLLVDILDAGNLSKAAQRLKMSRANVSYRLNQLEKSIGLQLVRRTTRRIEPTEI
CCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
GLRLYEHGRRIQNELLAAREAVTTLGQDLQGRVRLSVPSGYGQLVMSNWLIAFKRLYPGI
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCH
VLDVVFENRIEDLMRDEVDIAVRVMSEPPQNLVARDMGAVRYVACASPGFAATHGMPTEL
HHHHHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHCHHEEEEECCCCCCCCCCCCHHH
DQLFDAPVITSTVVGRQLRVAAYLGDERHEVLLEPTLISENFLFLRQAILSGLGVGIVPD
HHHHCCCHHHHHHHHHHHEEHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCC
YVVHDDVRRGAVVTTLDAYRLSIFGTHMYMLYMPNRHHTRATSTFIDFVLDEARNAGRGG
HHHHHHHHCCEEEEEHHHHHHHHEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8635745; 7542800 [H]