| Definition | Burkholderia thailandensis E264 chromosome chromosome I, complete sequence. |
|---|---|
| Accession | NC_007651 |
| Length | 3,809,201 |
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The map label for this gene is 83718806
Identifier: 83718806
GI number: 83718806
Start: 2895479
End: 2896600
Strand: Reverse
Name: 83718806
Synonym: BTH_I2538
Alternate gene names: NA
Gene position: 2896600-2895479 (Counterclockwise)
Preceding gene: 83719714
Following gene: 83721657
Centisome position: 76.04
GC content: 71.93
Gene sequence:
>1122_bases GTGGCTCGATCCGATGGGCCGCCAGCTCGTGTATCTGGCGTTCATCCTGCAAGTCGCCGGCGGCTACTGGCTGTACCGGC TCGCCCGGTTGAGGTGACCACGATGGATTCGAGCCGTCTTGGCGCAATCGCGCTCGTCCTCGGCGCAATCGGCGTGCTGA TGCTCGCCGCGCTCGCGATCATGCAGGCCGTGCTCGCGCGGCGCACCGGCCGCACGCTCGCGGACGCGCTCGACCAGCGC GCCGCCGCGCTCGAGGCCGCCGCCGCGCGTGCGACGACGGGCGCGGCGGCGGCCTCGAGCGCGGCGAGCGCGAGCGCCCC CGACGCGGCGCCGCACGCGCGCCGTTCGCGCTTCGCGACGTTGCTCGATCGCGCCGGCAAGTTCGGGATGCGCCTGCTCG ACACGCGGCTCGGCAAGCAGATCGTCGCCGAAGAGGACCGGATGCTGCTCGAGCAGTGCGGCTACGTCGACGCGCACACG CGCGGCATCTTCCTGAGCGCGCGGATCGCGTGCTCGATCGCGCTGCCCGCCGCCGTCGCGCTCTTCGGCAGCGCGACGGT CCGCACGCATCTGAGCGCGTGGGTCGCGCTGTCCGTGATCGCCGGCTTCATGCTGCCGAAGATCTACGTGCGCCGCCGCG CGGCGGCGCGCCGCCAGTCCGTCGTCGACGAGATGCCGCTGCTCGTCGACATGCTGCGGCTCTTGCAGGGCGTCGGGCTG TCGCTCGACCAGAGCATCCAGGTCGTCACGAACGATTTCAAGGGGATGCTGCCCGTGCTGTCGTCGGAGCTTGGGATCGC GCAGCGGCAGTTCGTCGCGGGCCGCACGCGCGAGCAGTCGCTGCAGCGCCTCGCGACCAGCTTCGACAATGAGGATCTGC GCGCGATCGTGCGTCTGCTGATCCAGGTCGACAAGCACGGCGGCGCGGTGCAGGAGCCGCTCAAGCAGTTCGGCGACCGG CTGCGCGAGGTGCGCCGCGCGATGCTGCGCGAGCGGATCGGCCGCCTCACGGTGAAGATGACGGGCGTGATGATTCTCAC GCTGCTGCCGGCGCTCTTCATCGTGACCGCGGGGCCGGGGATGCTCGCCGTCACGCACGCGCTCACGGCCGCGCGCCGCT AG
Upstream 100 bases:
>100_bases TGTCGGCGGAGACGCGGCTGTCGGCGTGGGTGCTCGGCGCGCTGCCCGTGGGCATCGGCAGCTTCGTGATCGCGACGAAT CCGAAGTATTTCAGCGCGAT
Downstream 100 bases:
>100_bases CCGCGTTTGCCGCCGCGCAACGAAGGAAGGAACGACATGAGACGAAGCAGCTTTTCACCAATGACGACGACGGCGGCGCT CGCGGCGCTTGCGTTGTCGC
Product: hypothetical protein
Products: NA
Alternate protein names: Flp Pilus Assembly Protein TadC; Type II/IV Secretion System Protein TadC Subfamily; Flp Pilus Assembly Protein; Type II Secretion System F Domain Protein; Type II Secretion System F Domain-Containing Protein; Tad Secretion System Secretion Accessory Protein; Type II Secretion System; TadC Protein; Bacterial Type II Secretion System Protein F Domain; Type II Secretion System Protein F Subunit; Type II Secretion System Protein F Domain; Bipartite Nuclear Localization Signal Containing Protein; Tight Adherence TadC Related Transmembrane Protein; Tight Adherence TadC-Related Transmembrane Protein; Type II Secretion System Protein Transmembrane; Secretion System Protein TadC; Integral Membrane Protein; Transmembrane Type II Secretion Protein; Type II/IV Secretion System Membrane Protein; TadC Family Type II/IV Secretion System Protein
Number of amino acids: Translated: 373; Mature: 372
Protein sequence:
>373_residues MARSDGPPARVSGVHPASRRRLLAVPARPVEVTTMDSSRLGAIALVLGAIGVLMLAALAIMQAVLARRTGRTLADALDQR AAALEAAAARATTGAAAASSAASASAPDAAPHARRSRFATLLDRAGKFGMRLLDTRLGKQIVAEEDRMLLEQCGYVDAHT RGIFLSARIACSIALPAAVALFGSATVRTHLSAWVALSVIAGFMLPKIYVRRRAAARRQSVVDEMPLLVDMLRLLQGVGL SLDQSIQVVTNDFKGMLPVLSSELGIAQRQFVAGRTREQSLQRLATSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDR LREVRRAMLRERIGRLTVKMTGVMILTLLPALFIVTAGPGMLAVTHALTAARR
Sequences:
>Translated_373_residues MARSDGPPARVSGVHPASRRRLLAVPARPVEVTTMDSSRLGAIALVLGAIGVLMLAALAIMQAVLARRTGRTLADALDQR AAALEAAAARATTGAAAASSAASASAPDAAPHARRSRFATLLDRAGKFGMRLLDTRLGKQIVAEEDRMLLEQCGYVDAHT RGIFLSARIACSIALPAAVALFGSATVRTHLSAWVALSVIAGFMLPKIYVRRRAAARRQSVVDEMPLLVDMLRLLQGVGL SLDQSIQVVTNDFKGMLPVLSSELGIAQRQFVAGRTREQSLQRLATSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDR LREVRRAMLRERIGRLTVKMTGVMILTLLPALFIVTAGPGMLAVTHALTAARR >Mature_372_residues ARSDGPPARVSGVHPASRRRLLAVPARPVEVTTMDSSRLGAIALVLGAIGVLMLAALAIMQAVLARRTGRTLADALDQRA AALEAAAARATTGAAAASSAASASAPDAAPHARRSRFATLLDRAGKFGMRLLDTRLGKQIVAEEDRMLLEQCGYVDAHTR GIFLSARIACSIALPAAVALFGSATVRTHLSAWVALSVIAGFMLPKIYVRRRAAARRQSVVDEMPLLVDMLRLLQGVGLS LDQSIQVVTNDFKGMLPVLSSELGIAQRQFVAGRTREQSLQRLATSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRL REVRRAMLRERIGRLTVKMTGVMILTLLPALFIVTAGPGMLAVTHALTAARR
Specific function: Unknown
COG id: COG2064
COG function: function code NU; Flp pilus assembly protein TadC
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 39939; Mature: 39807
Theoretical pI: Translated: 11.95; Mature: 11.95
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MARSDGPPARVSGVHPASRRRLLAVPARPVEVTTMDSSRLGAIALVLGAIGVLMLAALAI CCCCCCCCCCCCCCCHHHCCEEEECCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHH MQAVLARRTGRTLADALDQRAAALEAAAARATTGAAAASSAASASAPDAAPHARRSRFAT HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCHHHHHHHHH LLDRAGKFGMRLLDTRLGKQIVAEEDRMLLEQCGYVDAHTRGIFLSARIACSIALPAAVA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEHHHHHHHHHHHHHH LFGSATVRTHLSAWVALSVIAGFMLPKIYVRRRAAARRQSVVDEMPLLVDMLRLLQGVGL HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC SLDQSIQVVTNDFKGMLPVLSSELGIAQRQFVAGRTREQSLQRLATSFDNEDLRAIVRLL CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHH IQVDKHGGAVQEPLKQFGDRLREVRRAMLRERIGRLTVKMTGVMILTLLPALFIVTAGPG HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC MLAVTHALTAARR HHHHHHHHHHHCC >Mature Secondary Structure ARSDGPPARVSGVHPASRRRLLAVPARPVEVTTMDSSRLGAIALVLGAIGVLMLAALAI CCCCCCCCCCCCCCHHHCCEEEECCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHH MQAVLARRTGRTLADALDQRAAALEAAAARATTGAAAASSAASASAPDAAPHARRSRFAT HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCHHHHHHHHH LLDRAGKFGMRLLDTRLGKQIVAEEDRMLLEQCGYVDAHTRGIFLSARIACSIALPAAVA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEHHHHHHHHHHHHHH LFGSATVRTHLSAWVALSVIAGFMLPKIYVRRRAAARRQSVVDEMPLLVDMLRLLQGVGL HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC SLDQSIQVVTNDFKGMLPVLSSELGIAQRQFVAGRTREQSLQRLATSFDNEDLRAIVRLL CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHH IQVDKHGGAVQEPLKQFGDRLREVRRAMLRERIGRLTVKMTGVMILTLLPALFIVTAGPG HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC MLAVTHALTAARR HHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA