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The map label for this gene is rpoE [H]

Identifier: 83718744

GI number: 83718744

Start: 75778

End: 76293

Strand: Reverse

Name: rpoE [H]

Synonym: BTH_I0071

Alternate gene names: 83718744

Gene position: 76293-75778 (Counterclockwise)

Preceding gene: 83719862

Following gene: 83719748

Centisome position: 2.0

GC content: 68.6

Gene sequence:

>516_bases
ATGCCCTCCGCCGATCTCGACGACCCACTACGCGAGTTGCTGCCGCGACTGCGCCGCTTCGCGCTCTGGCTAACCCGCGA
CGTGCACAGCGCCGACGATCTCGTGCAGTCGACGCTCGAGCGCGCGCTGTCGCGCTGGTCGACGCGCCGTGACGCTTCGG
CGCTGCGCAGCTGGCTCTTCACGATCCTGTACCGGCAGTTCGTCGATACGACGCGGCGGGCCAAGCGCTACGCGTGGCTG
CTCGGCCGGATCAAGGACGACGACGAGCCGCAATGGCCGTCCGCCGAGGATCACGCGCTCGCGCGATCGATGCTCGACGC
GTTCGGCCGGCTGTCGACGGAACAGCGCAGCCTGCTGCTGCTCGTCGCCGTCGAGGGGTTCAGCTATCAGGAAGTCGCCG
AGCTGCTCGACATCCCGATCGGCACCGTGATGTCGCGGCTGTCGCGCGCGCGTCAGGCGCTGCGCGCGCTCGGCGACGGC
GAGATTTCCGCTCCTTCGCTGCGTTTGATGAAATGA

Upstream 100 bases:

>100_bases
GTTTATTCCATCGAAATTTATTTTCGAACGCATGGAATAACCGTCGGCGGCGAACGTCTCACGCATTGAACCCACGCCCA
CGACGGCCTCCGATCCGCCC

Downstream 100 bases:

>100_bases
ACATTCCGCCCGACGAACAGGATCTCCACGCTTACGTCGACGGCCGGCTCGACGCCGATGCGCGCGTGGCCGTCGAACGC
TGGCTCGCGCTGCATCCGGC

Product: ECF subfamily RNA polymerase sigma factor

Products: NA

Alternate protein names: Sigma-24 [H]

Number of amino acids: Translated: 171; Mature: 170

Protein sequence:

>171_residues
MPSADLDDPLRELLPRLRRFALWLTRDVHSADDLVQSTLERALSRWSTRRDASALRSWLFTILYRQFVDTTRRAKRYAWL
LGRIKDDDEPQWPSAEDHALARSMLDAFGRLSTEQRSLLLLVAVEGFSYQEVAELLDIPIGTVMSRLSRARQALRALGDG
EISAPSLRLMK

Sequences:

>Translated_171_residues
MPSADLDDPLRELLPRLRRFALWLTRDVHSADDLVQSTLERALSRWSTRRDASALRSWLFTILYRQFVDTTRRAKRYAWL
LGRIKDDDEPQWPSAEDHALARSMLDAFGRLSTEQRSLLLLVAVEGFSYQEVAELLDIPIGTVMSRLSRARQALRALGDG
EISAPSLRLMK
>Mature_170_residues
PSADLDDPLRELLPRLRRFALWLTRDVHSADDLVQSTLERALSRWSTRRDASALRSWLFTILYRQFVDTTRRAKRYAWLL
GRIKDDDEPQWPSAEDHALARSMLDAFGRLSTEQRSLLLLVAVEGFSYQEVAELLDIPIGTVMSRLSRARQALRALGDGE
ISAPSLRLMK

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in heat shock and oxidative stress response; it is believed to control protein processing

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014293
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 19653; Mature: 19522

Theoretical pI: Translated: 9.68; Mature: 9.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPSADLDDPLRELLPRLRRFALWLTRDVHSADDLVQSTLERALSRWSTRRDASALRSWLF
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
TILYRQFVDTTRRAKRYAWLLGRIKDDDEPQWPSAEDHALARSMLDAFGRLSTEQRSLLL
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHEEE
LVAVEGFSYQEVAELLDIPIGTVMSRLSRARQALRALGDGEISAPSLRLMK
EEEECCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCC
>Mature Secondary Structure 
PSADLDDPLRELLPRLRRFALWLTRDVHSADDLVQSTLERALSRWSTRRDASALRSWLF
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
TILYRQFVDTTRRAKRYAWLLGRIKDDDEPQWPSAEDHALARSMLDAFGRLSTEQRSLLL
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHEEE
LVAVEGFSYQEVAELLDIPIGTVMSRLSRARQALRALGDGEISAPSLRLMK
EEEECCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]